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DOE OSTI2020

The αs and θs in Rayleigh–Taylor and Richtmyer–Meshkov instabilities

The alphas (α b , α s ) and thetas (θ b , θ s ) are the essential parameters describing the asymptotic growth behavior of the mixing layer driven by Rayleigh–Taylor (RT) and Richtmyer–Meshkov (RM) instabilities at the interface between the fluids. Extensive simulations and experiments have been conducted in the determination of these parameters. The results depend on numerical algorithms, resolutions, and the accuracy of experimental measurements. In this article, we present a unique relationship between the alphas and thetas by applying a simple buoyancy-drag mixing model. Our first main result is that, for the same fluids, these parameters are not independent because they are fundamentally connected by physics principles and they all are functions of the drag coefficients of the fluids. As a consequence, the alphas and thetas are intrinsically coupled. All are functions of any single one of these. Additionally, our second main result is that the RT bubble growth rate (α b ) is determined by the bubble competition process – a merger model – at the edge of the mixing layer. Together, these two main results determine all the alphas and thetas by strictly theoretical reasoning. Applications to both hydro and laser driven experiments at OMEGA are presented.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2020

GronOR: Massively Parallel and GPU-Accelerated Non-Orthogonal Configuration Interaction for Large Molecular Systems

GronOR is a program package for non-orthogonal configuration interaction calculations for an electronic wave function built in terms of anti-symmetrized products of multi-configuration molecular fragment wave functions. The two-electron integrals that have to be processed may be expressed in terms of atomic orbitals or in terms of an orbital basis determined from the molecular orbitals of the fragments. The code has been specifically designed for execution on distributed memory massively parallel and Graphics Processing Unit (GPU)-accelerated computer architectures, using an MPI+OpenACC/OpenMP programming approach. The task-based execution model used in the implementation allows for linear scaling with the number of nodes on the largest pre-exascale architectures available, provides hardware fault resiliency, and enables effective execution on systems with distinct central processing unit-only and GPU-accelerated partitions. The code interfaces with existing multi-configuration electronic structure codes that provide optimized molecular fragment orbitals, configuration interaction coefficients, and the required integrals. Algorithm and implementation details, parallel and accelerated performance benchmarks, and an analysis of the sensitivity of the accuracy of results and computational performance to thresholds used in the calculations are presented.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2018

Sampling Conditions for Conforming Voronoi Meshing by the VoroCrust Algorithm

We study the problem of decomposing a volume with a smooth boundary into a collection of Voronoi cells. Unlike the dual problem of conforming Delaunay meshing, a principled solution to this problem for generic smooth surfaces remained elusive. VoroCrust leverages ideas from weighted α-shapes and the power crust algorithm to produce unweighted Voronoi cells conforming to the surface, yielding the first provably-correct algorithm for this problem. Given a κ-sparse ε-sample, we work with the balls of radius δ times the local feature size centered at each sample. The corners of the union of these balls on both sides of the surface are the Voronoi sites and the interface of their cells is a watertight surface reconstruction embedded in the dual shape of the union of balls. With the surface protected, the enclosed volume can be further decomposed by generating more sites inside it. Compared to clipping-based algorithms, VoroCrust cells are full Voronoi cells, with convexity and fatness guarantees. Compared to the power crust algorithm, VoroCrust cells are not filtered, are unweighted, and offer greater flexibility in meshing the enclosed volume by either structured or randomly genenerated samples.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Development and Implementation of Fault-Correction Algorithms in Fault Detection and Diagnostics Tools

A fault detection and diagnostics (FDD) tool is a type of energy management and information system that continuously identifies the presence of faults and efficiency improvement opportunities through a one-way interface to the building automation system and the application of automated analytics. Building operators on the leading edge of technology adoption use FDD tools to enable median whole-building portfolio savings of 8%. Although FDD tools can inform operators of operational faults, currently an action is always required to correct the faults to generate energy savings. A subset of faults, however, such as biased sensors, can be addressed automatically, eliminating the need for staff intervention. Automating this fault “correction” can significantly increase the savings generated by FDD tools and reduce the reliance on human intervention. Doing so is expected to advance the usability and technical and economic performance of FDD technologies. This paper presents the development of nine innovative fault auto-correction algorithms for Heating, Ventilation, and Air Conditioning pi(HVAC) systems. When the auto-correction routine is triggered, it overwrites control setpoints or other variables to implement the intended changes. It also discusses the implementation of the auto-correction algorithms in commercial FDD software products, the integration of these strategies with building automation systems and their preliminary testing.

field testing↗

DOE OSTI2020

Matching Crystal Structures Atom-to-Atom

Finding an optimal match between two different crystal structures underpins many important materials science problems, including describing solid-solid phase transitions and developing models for interface and grain boundary structures. Here, we formulate the matching of crystals as an optimization problem where the goal is to find the alignment and the atom-to-atom map that minimize a given cost function such as the Euclidean distance between the atoms. We construct an algorithm that directly solves this problem for large finite portions of the crystals and retrieves the periodicity of the match subsequently. We demonstrate its capacity to describe transformation pathways between known polymorphs and to reproduce experimentally realized structures of semi-coherent interfaces. Additionally, from our findings, we define a rigorous metric for measuring distances between crystal structures that can be used to properly quantify their geometric (Euclidean) closeness.

36 MATERIALS SCIENCE↗

DOE OSTI2025

Internship Presentation: Reactor System Facility Modification to Detect Compromised Human Machine Interfaces

This study presents a multi-layered Industrial Control System (ICS)/Operational Technology (OT) security architecture aimed at detecting and mitigating compromised Human Machine Interface (HMI) and Instrumentation & Control (I&C) systems within the Flowing Autoclave System (FAS) at Idaho National Laboratory (INL). The approach combines network security solutions, hash-based algorithms, and blockchain technologies to verify system integrity and provide an immutable record of network activity. This integrated three-pronged strategy enhances the detection of system compromises, enabling preemptive action before significant damage occurs.

21 - SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLAN↗

DOE OSTI2021

An efficient reconstruction algorithm for diffusion on triangular grids using the nodal discontinuous Galerkin method

High-energy-density (HED) hydrodynamics studies such as those relevant to inertial confinement fusion and astrophysics require highly disparate densities, temperatures, viscosities, and other diffusion parameters over relatively short spatial scales. This presents a challenge for high-order accurate methods to effectively resolve the hydrodynamics at these scales, particularly in the presence of highly disparate diffusion. A significant volume of engineering and physics applications use an unstructured discontinuous Galerkin (DG) method developed based on the finite element mesh generation and algorithmic framework. This work discusses the application of an affine reconstructed nodal DG method for unstructured grids of triangles. Solving the diffusion terms in the DG method is non-trivial due to the solution representations being piecewise continuous. Hence, the diffusive flux is not defined on the interface of elements. The proposed numerical approach reconstructs a smooth solution in a parallelogram that is enclosed by the quadrilateral formed by two adjacent triangle elements. The interface between these two triangles is the diagonal of the enclosed parallelogram. Similar to triangles, the mapping of parallelograms from a physical domain to a reference domain is an affine mapping, which is necessary for an accurate and efficient implementation of the numerical algorithm. Thus, all computations can still be performed on the reference domain, which promotes efficiency in computation and storage. This reconstruction does not make assumptions on choice of polynomial basis. Reconstructed DG algorithms have previously been developed for modal implementations of the convection–diffusion equations. However, to the best of the authors’ knowledge, this is the first practical guideline that has been proposed for applying the reconstructed algorithm on a nodal discontinuous Galerkin method with a focus on accuracy and efficiency. As a result, the algorithm is demonstrated on a number of benchmark cases as well as a challenging substantive problem in HED hydrodynamics with highly disparate diffusion parameters.

Computational efficiency↗

DOE OSTI2020

Can We Fix It Automatically? Development of Fault Auto-Correction Algorithms for HVAC and Lighting Systems

A fault detection and diagnostics (FDD) tool is a type of energy management and information system designed to continuously identify the presence of faults and efficiency improvement opportunities through a one-way interface to the building automation system and application of automated analytics. Building owners and operators at the leading edge of technology adoption are using FDD tools to enable average whole-building portfolio savings of 8 percent. Although FDD tools can inform building operators of operational faults, currently a manual action is always required to correct faults and generate the associated energy savings. A subset of faults, however, such as biased sensors and manual override, can be addressed automatically, removing the need for operations and maintenance staff intervention. Automating this fault “correction” can significantly increase the savings generated by FDD tools and reduce the reliance on human intervention. Doing so is expected to advance the usability, as well as the technical and economic performance, of FDD technologies. In this paper, we present the development of 10 innovative fault auto-correction algorithms for HVAC and lighting systems. When the auto-correction routine is triggered, it will overwrite the control setpoints or other variables (via BACnet or other protocol) to implement the intended changes. These algorithms are able to automatically correct the faults or improve the operation associated with an incorrectly programmed schedule, override manual control, sensor bias, control hunting, rogue zone, and less aggressive setpoints/setpoints setback. The paper will also discuss the implementation of the auto-correction algorithms in FDD software products.

Lin, Guanjing↗

DOE OSTI2026

Alchemy: A Model-Based Approach for 2D to 3D Autonomous Nuclear System Design

Engineering design of nuclear power plant (NPP) piping and equipment systems frequently bypasses crucial 2D system planning, instead moving straight to 3D modeling. This often leads to designs that exceed building envelope constraints, forcing expensive and time-consuming redesigns. When 2D modeling is employed, it typically involves labor-intensive manual workflows that convert 2D drawings into 3D models, resulting in inefficiencies and errors across design iterations. These workflows further suffer from poor software interoperability and dependence on proprietary software ecosystems, thereby contributing to schedule delays and cost overruns. This paper presents Alchemy, an autonomous framework that transforms 2D system definitions into Industry Foundation Classes (IFC)-compliant 3D building information models (BIMs) for expediting nuclear facility design at the conceptual preliminary phase. Using a model-based approach, the framework treats the 2D system diagram as the central reference model employed to automatically generate all subsequent outputs, ensuring consistency between the system definition and the resulting physical design. A web-based interface enables engineers to define hierarchical system topologies including associated equipment, geometric properties, and connectivity requirements. A two-phase equipment layout optimization algorithm automatically computes collision-free spatial configurations within predefined building envelopes. An artificial intelligence (AI)-assisted pipe routing module then generates orthogonal, collision-free routing paths, allowing the user to select either an A* search-based method or an Ant Colony Optimization (ACO)-based method. All outputs are authored natively in IFC format, relying on open-source technologies and standardized formats in order to ensure extensibility and eliminate proprietary software dependencies. The proposed framework is validated on two representative pressurized-water reactor (PWR)-based case studies, for which it autonomously generates IFC-compliant 3D models in minutes, drastically reducing workflows that typically require hours of manual effort. The generated model demonstrates topologically correct equipment placement, physically plausible spatial relationships, and collision-free pipe routing consistent with known PWR loop configurations. This work represents a foundational step toward digital engineering for nuclear facility preliminary design, with future ongoing development targeting design code compliance and expanded system complexity.

97 - MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Recent advances in computational mathematics and applications

We are honored to bring you this special issue dedicated to recent advances in computational mathematics and applications in science and engineering. The papers in this special issue were presented in ”Conference on Computational Mathematics and Applications (CCMA)” held at the University of Nevada Las Vegas (UNLV) during October 25–27, 2019. The conference has attracted about 90 attendees from six countries. The 15 papers in the special issue comprise a diverse collection of theoretical numerical analysis as well as applications in various subjects. Topics cover optimal control of PDEs, discontinuous Galerkin methods, fluid flow in porous media, turbulence flow, static and moving interface problems, complex fluids composed by the mixture of Newtonian fluid and nematic (liquid crystal) flows, modeling of ocean–atmosphere system, image segmentation algorithm, uncertainty quantification problems for turbulence model and Maxwell’s equations, iterative solver for systems resulting from mixed methods, and novel methods for solving systems of nonlinear equations. As the Guest Editors we would like to thank Dr. Leland Jameson at NSF (National Science Foundation) for kindly supporting our conference proposal which made this conference possible. We would also like to thank Darren Sugrue from Elsevier who provided partial support for our conference, and Thennarasu Gunasekaran and his production team from Elsevier who produced this nice special issue. We are grateful to many people (Dr. Zhijian Wu, Lori Ornelas, Elsa Juarez, and many Ph.D. students) at the Department of Mathematical Sciences of UNLV who provided tremendous support for the conference. Finally, we very much appreciate all authors who contributed their precious results to this special issue.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2018

On a physics-based model equation for shock-position evolution in PMMA

A governing differential equation for shock position in PMMA was derived from momentum conservation and an experimentally determined decay law for shock pressure. A new multi-diagnostic characterization method for measuring detonator pressure and wave shape output in PMMA witness blocks provided temporally resolved, 1-D, shock-position data that was iteratively fit by solutions to the governing equation via a unique genetic algorithm solver. The goal was to calculate a solution that describes the temporal evolution of shock pressure in PMMA starting at the detonator interface. The empirical decay law was investigated using experimental data, where different regimes were considered for the decay coefficients. A successful solution provides extensive performance information that is directly relevant to the understanding and characterization of detonator function.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2025

Three-dimensional modeling of hyphal fusion, branching, and nutrient transport in filamentous fungi

Fungi exhibit behaviors distinct from other microbes. Filamentous fungi grow by extending complex networks of branched filaments collectively referred to as the mycelium. These networks can expand over large distances and traverse low-nutrient areas by translocating nutrients through the filament network. This spatial characteristic makes filamentous fungi crucial for soil ecosystems, supporting stable microbial communities and promoting plant growth. However, simulating these behaviors is complex. The elongated nature of fungal compartments results in different mechanical interactions compared to the commonly modeled spherical bacteria. These detailed hyphal mechanics require specialized consideration and are often excluded from conventional fungal simulation packages. Additionally, the extensive fungal networks in nature demand computationally intensive simulations, necessitating high-performance algorithms. Therefore, realistic fungi simulations require specialized software. Here, we introduce a fungal modeling expansion to the high-performance biological modelling and interface exchange (bmx) software suite. bmx leverages adaptive mesh refinement in AMReX for chemical diffusion and incorporates a full mechanical model for bacterial cells, accelerated by GPUs. By extending bmx to model filamentous particles, we demonstrate the formation of complex filament networks through interactions like hyphal branching and fusion (anastomosis). We show that the networks produced match real-world fungal structures through various metrics. This work supports computational studies of fungal growth dynamics and can be adapted to investigate the growth of other filamentous structures in biology or materials science. The expanded-BMX package is open-sourced and is available online.

Cell mechanics↗

DOE OSTI2019

Evaluation of Acoustic Channel Capacity for Complex Piping Topology

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2019

Final Report for Transmission of Information by Acoustic Communication along Metal Pathways in Nuclear Facilities

Transmission of information using elastic waves on existing metallic pipes provides an alternative communication option for a nuclear facility. The advantages of this approach consist of transmitting information through barriers, such as the containment building wall. A viable candidate for acoustic communication channel is a chemical volume control system (CVCS) stainless steel pipe, which penetrates through the containment building wall. A laboratory bench-scale system consisting of a nuclear grade CVCS-like pipe and ultrasonic transducers was assembled for a preliminary communication system analysis. Because of low bandwidth and spectral dispersion of ultrasonic transducers, on off keying (OOK) protocol was chosen for data communication. Operation of the acoustic communication during normal and post-accident conditions involves data transmission on the CVCS pipe, which according to literature guidelines, will be at 50°C and 150°C, respectively. Preliminary communication system development was performed using paintbrush PZT transducers capable of continuous operation at temperatures up to 80°C. Next, high-temperature LiNbO 3 acoustic transducers, originally developed for flow metering applications of EBRII reactor at Argonne, were utilized to develop a high-temperature acoustic communication system. A Gaussian pulse shape filter was introduced to suppress ringing and thus reduce inter-symbol interference. This resulted in enhancement of data transmission bitrate. Heating tapes, temperature controllers, and thermal insulation were installed on the laboratory pipe to study acoustic communication at elevated temperature. This included development of custom insertion heating elements for controlling temperature at pipe ends. Demonstrations of communication at high temperature included transmission of images and text files. Main achievements thus far include demonstration of transmission of 90KB image at the bitrate of 10Kbps with bit error rate smaller than 10 -3 across the pipe heated to 50°C and 150°C. Final phase of project development involved investigating strategies for deployment of the ultrasonic communication system in a representative environment. Mechanisms Engineering Test Loop (METL) facility at ANL was chosen as a viable candidate for communication system demonstration. Analysis of piping manifolds at METL has shown that in a typical scenario, ultrasonic signals have to be transmitted over straight and bent piping sections. This report describes preliminary studies on transmission of information with ultrasonic shear waves across bent piping sections. A test article consisting of a stainless steel pipe bent at 90° was developed for laboratory analysis of ultrasonic signal transmission. The bent piping test article developed by welding two straight pipes to an elbow. For consistency, the diameter and wall thickness of the bent pipe is the same as that of the straight pipe utilized in prior studies. COMSOL computer simulations were performed to study ultrasonic refracted shear wave coupling and transmission across bent piping. Preliminary evaluations of ultrasonic shear wave transmission were conducted with piezoelectric (PZT) and LiNbO 3 transducers, with the signals recorded with previously developed LabView interface. Preliminary results have shown significant dispersion of transmitted signals, most likely due to reflections and scattering by piping welds. Signal distortion compensation algorithm based on time reversal modulation (TRM) was initially investigated for transmission through solids, and demonstrated for signals transmitted over the bent pipe. Using TRM, it was shown that communication bitrates of 100Kbps were achievable, in principle.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

DOE OSTI2021

DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data

We present DEIMoS: Data Extraction for Integrated Multidimensional Spectrometry, a Python application programming interface and command-line tool for high-dimensional mass spectrometry data analysis workflows, offering ease of development and access to efficient algorithmic implementations. Functionality includes feature detection, feature alignment, collision cross section calibration, isotope detection, and MS/MS spectral deconvolution, with the output comprising detected features aligned across study samples and characterized by mass, CCS, tandem mass spectra, and isotopic signature. Notably, DEIMoS operates on N-dimensional data, largely agnostic to acquisition instrumentation: algorithm implementations utilize all dimensions simultaneously to (i) offer greater separation between features, improving detection sensitivity, (ii) increase alignment/feature matching confidence among datasets, and (iii) mitigate convolution artifacts in tandem mass spectra. We demonstrate DEIMoS with LC-IMS-MS/MS data, demonstrating the advantages of a multidimensional approach in each data processing step.

Colby, Sean M↗

DOE OSTI2025

Optimizing inference of segmentation on high-resolution images in MLExchange

MLExchange is a machine learning (ML) operations platform providing web user-interfaces (UIs) for data visualization and analysis pipelines at synchrotron facilities. Among these UIs is the segmentation app which helps synchrotron users utilize ML algorithms to automatically segment high-resolution scientific images with minimal manual annotation effort. In this work, we share code optimizations that significantly speed up the segmentation inference workflow of large data in short time. By optimizing the sequence of CPU-GPU data transfers and introducing CPU parallelization to key operations, we improve the per-device, per-image frame computational efficiency and observe close to 3×$$\times$$ speedup over the original segmentation inference workflow run time when utilizing a single GPU. Further adaptations enabling multi-GPU inference yield more than 40×$$\times$$ speedup with 100 GPUs compared to the optimized single GPU inference workflow. This acceleration of the segmentation inference workflow will provide MLExchange users with easy access to segmentation results with little wait time.

Lu, Shizhao↗

DOE OSTI2024

Hy-DAT: A Tool to Address Hydropower Modeling Gaps Using Interdependency, Efficiency Curves, and Unit Dispatch Models

As the power system continues to be flooded with intermittent resources, it becomes more important to accurately assess the role of hydro and its impact on the power grid. While hydropower generation has been studied for decades, dependency of power generation on water availability and constraints in hydro operation are not well represented in power system models used in the planning and operation of large-scale interconnection studies. There are still multiple modeling gaps that need to be addressed; if not, they can lead to inaccurate operation and planning reliability studies, and consequently to unintentional load shedding or even blackouts. As a result, it is very important thathydropower is represented correctly in both steady-state and dynamic power system studies. In this paper, we discuss the development and use of the Hydrological Dispatch and Analysis Tool (Hy-DAT) as an interactive graphical user interface (GUI), that uses a novel methodology to address the hydropower modeling gaps like water availability and inter-dependency using a database, and algorithms, to generate accurate representative models for power system simulation.

Wang, Dewei↗

DOE OSTI2021

FTK: A Simplicial Spacetime Meshing Framework for Robust and Scalable Feature Tracking

In this work, we present the Feature Tracking Kit (FTK), a framework that simplifies, scales, and delivers various feature-tracking algorithms for scientific data. The key of FTK is our simplicial spacetime meshing scheme that generalizes both regular and unstructured spatial meshes to spacetime while tessellating spacetime mesh elements into simplices. The benefits of using simplicial spacetime meshes include (1) reducing ambiguity cases for feature extraction and tracking, (2) simplifying the handling of degeneracies using symbolic perturbations, and (3) enabling scalable and parallel processing. The use of simplicial spacetime meshing simplifies and improves the implementation of several feature-tracking algorithms for critical points, quantum vortices, and isosurfaces. As a software framework, FTK provides end users with VTK/ParaView filters, Python bindings, a command line interface, and programming interfaces for feature-tracking applications. We demonstrate use cases as well as scalability studies through both synthetic data and scientific applications including tokamak, fluid dynamics, and superconductivity simulations. We also conduct end-to-end performance studies on the Summit supercomputer. FTK is open sourced under the MIT license: https://github.com/hguo/ftk.

97 MATHEMATICS AND COMPUTING↗