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At least 307 records · Page 17

Software and Algorithms for Biomedical Image Data Processing and Visualization

A new software equipped with novel image processing algorithms and graphical-user-interface (GUI) tools has been designed for automated analysis and processing of large amounts of biomedical image data. The software, called PlaqTrak, has been specifically used for analysis of plaque on teeth of patients. New algorithms have been developed and implemented to segment teeth of interest from surrounding gum, and a real-time image-based morphing procedure is used to automatically overlay a grid onto each segmented tooth. Pattern recognition methods are used to classify plaque from surrounding gum and enamel, while ignoring glare effects due to the reflection of camera light and ambient light from enamel regions. The PlaqTrak system integrates these components into a single software suite with an easy-to-use GUI (see Figure 1) that allows users to do an end-to-end run of a patient s record, including tooth segmentation of all teeth, grid morphing of each segmented tooth, and plaque classification of each tooth image. The automated and accurate processing of the captured images to segment each tooth [see Figure 2(a)] and then detect plaque on a tooth-by-tooth basis is a critical component of the PlaqTrak system to do clinical trials and analysis with minimal human intervention. These features offer distinct advantages over other competing systems that analyze groups of teeth or synthetic teeth. PlaqTrak divides each segmented tooth into eight regions using an advanced graphics morphing procedure [see results on a chipped tooth in Figure 2(b)], and a pattern recognition classifier is then used to locate plaque [red regions in Figure 2(d)] and enamel regions. The morphing allows analysis within regions of teeth, thereby facilitating detailed statistical analysis such as the amount of plaque present on the biting surfaces on teeth. This software system is applicable to a host of biomedical applications, such as cell analysis and life detection, or robotic applications, such as product inspection or assembly of parts in space and industry.

Talukder, Ashit↗

Application of optical correlation techniques to particle imaging velocimetry

Pulsed laser sheet velocimetry yields nonintrusive measurements of velocity vectors across an extended 2-dimensional region of the flow field. The application of optical correlation techniques to the analysis of multiple exposure laser light sheet photographs can reduce and/or simplify the data reduction time and hardware. Here, Matched Spatial Filters (MSF) are used in a pattern recognition system. Usually MSFs are used to identify the assembly line parts. In this application, the MSFs are used to identify the iso-velocity vector contours in the flow. The patterns to be recognized are the recorded particle images in a pulsed laser light sheet photograph. Measurement of the direction of the partical image displacements between exposures yields the velocity vector. The particle image exposure sequence is designed such that the velocity vector direction is determined unambiguously. A global analysis technique is used in comparison to the more common particle tracking algorithms and Young's fringe analysis technique.

Wernet, Mark P.↗

Application of optical correlation techniques to particle imaging

Pulsed laser sheet velocimetry yields noninstrusive measurements of velocity vectors across an extended 2-dimensional region of the flow field. The application of optical correlation techniques to the analysis of multiple exposure laser light sheet photographs can reduce and/or simplify the data reduction time and hardware. Here, Matched Spatial Filters (MSF) are used in a pattern recognition system. Usuallay MSFs are used to identify the assembly line parts. In this application, the MSFs are used to identify the iso-velocity vector contours in the flow. The patterns to be recognized are the recorded particle images in a pulsed laser light sheet photograph. Measurement of the direction of the particle image displacements between exposures yields the velocity vector. The particle image exposure sequence is designed such that the velocity vector direction is determined unambiguously. A global analysis technique is used in comparison to the more common particle tracking algorithms and Young's fringe analysis technique.

Wernet, Mark P.↗

Spectrum Modal Analysis for the Detection of Low-Altitude Windshear with Airborne Doppler Radar

A major obstacle in the estimation of windspeed patterns associated with low-altitude windshear with an airborne pulsed Doppler radar system is the presence of strong levels of ground clutter which can strongly bias a windspeed estimate. Typical solutions attempt to remove the clutter energy from the return through clutter rejection filtering. Proposed is a method whereby both the weather and clutter modes present in a return spectrum can be identified to yield an unbiased estimate of the weather mode without the need for clutter rejection filtering. An attempt will be made to show that modeling through a second order extended Prony approach is sufficient for the identification of the weather mode. A pattern recognition approach to windspeed estimation from the identified modes is derived and applied to both simulated and actual flight data. Comparisons between windspeed estimates derived from modal analysis and the pulse-pair estimator are included as well as associated hazard factors. Also included is a computationally attractive method for estimating windspeeds directly from the coefficients of a second-order autoregressive model. Extensions and recommendations for further study are included.

Kunkel, Matthew W.↗

CRISPR-Cas12a bends DNA to destabilize base pairs during target interrogation

RNA-guided endonucleases are involved in processes ranging from adaptive immunity to site-specific transposition and have revolutionized genome editing. CRISPR-Cas9, -Cas12 and related proteins use guide RNAs to recognize ~20-nucleotide target sites within genomic DNA by mechanisms that are not yet fully understood. We used structural and biochemical methods to assess early steps in DNA recognition by Cas12a protein-guide RNA complexes. We show here that Cas12a initiates DNA target recognition by bending DNA to induce transient nucleotide flipping that exposes nucleobases for DNA-RNA hybridization. Cryo-EM structural analysis of a trapped Cas12a–RNA–DNA surveillance complex and fluorescence-based conformational probing show that Cas12a-induced DNA helix destabilization enables target discovery and engagement. This mechanism of initial DNA interrogation resembles that of CRISPR-Cas9 despite distinct evolutionary origins and different RNA-DNA hybridization directionality of these enzyme families. Our findings support a model in which RNA-mediated DNA interference begins with local helix distortion by transient CRISPR-Cas protein binding.

59 BASIC BIOLOGICAL SCIENCES↗

A reconnaissance space sensing investigation of crustal structure for a strip from the eastern Sierra Nevada to the Colorado Plateau

The author has identified the following significant results. Analysis of ERTS-1 MSS imagery over the sourthern Basin-Range Province of California, Nevada, and Arizona has led to recognition of regional tectonic control of volcanism, plutonism, mineralization, and fault patterns. This conclusion is the result of geologic reconnaissance of anomalies observed in ERTS-1 and Apollo-9 data, guided by intermediate scale U-2 photography, SLAR, and relevant geologic literature. In addition to regional tectonic studies, the ERTS-1 imagery provides a basis for detailed research of relatively small geologic features. Interpretation of ERTS-1 and Apollo-9 space imagery and intermediate scale X-15 and U-2 photography indicates the presence of a major fault zone along the California-Nevada state line, here named the Pahrump fault zone. Field mapping confirms previously unreported evidence of fault breaks in bedrock, along range fronts and in Quaternary alluvium and lake sediments. Regional gravity lows and fault traces within the Pahrump fault zone from a general left stepping en echelon pattern. The trend and postulated diplacement for this fault are similar to other major strike slip fault zones in the southern Basin-Range Province.

Bechtold, I. C.↗

Experimental study of bubble cavities attached to a rotating shaft in a reservoir

Bubble cavities formed by air entrainment and attached to a rotating shaft in an oil reservoir were studied. The cavities appear to the unaided eye as toroidal. High speed photography, however, reveals the individuality of the bubble cavities and their near solid body rotational characteristics. The cavities are distorted by the rotation effects but remain attached and tend to merge because of edge effects in the axial direction. The flow field within the reservoir is influenced by the unusual character of the two phase fluid found there; the vorticity is readily visualized. Other examples of vapor entrapment at the inlet of an eccentric rotor are also discussed. A simplified analytical method is provided, and a numerical analysis is being investigated. Vapor (void) entrainment and generation can significantly alter leakage rates and stability of seals, bearings, and dampers. Recognition of these effects in the component design systems will result only after detailed studies of the above phenomena.

Hendricks, R. C.↗

Launch commit criteria performance trending analysis

Summarized results and recommendations are presented for a prototype performance-trending study sponsored by the Marshall Space Flight Center (MSFC) with NASA Headquarters support. The acquirement of this recognition capability is statistically addressed through the expansion of an arbitrary probability density function (PDF) of the Gram-Charlier series type. This PDF is utilized to assess the relative deviation of any future measurement confidence bounds for launch commit criteria. As a result, the probabilistic assessment of time-varying measurement fluctuation stability can be identified in terms of these historical measurement profiles.

Hart, G. F.↗

Residual acceleration data on IML-1: Development of a data reduction and dissemination plan

The main thrust of our work in the third year of contract NAG8-759 was the development and analysis of various data processing techniques that may be applicable to residual acceleration data. Our goal is the development of a data processing guide that low gravity principal investigators can use to assess their need for accelerometer data and then formulate an acceleration data analysis strategy. The work focused on the flight of the first International Microgravity Laboratory (IML-1) mission. We are also developing a data base management system to handle large quantities of residual acceleration data. This type of system should be an integral tool in the detailed analysis of accelerometer data. The system will manage a large graphics data base in the support of supervised and unsupervised pattern recognition. The goal of the pattern recognition phase is to identify specific classes of accelerations so that these classes can be easily recognized in any data base. The data base management system is being tested on the Spacelab 3 (SL3) residual acceleration data.

Rogers, Melissa J. B.↗

The performance evaluation of a new neural network based traffic management scheme for a satellite communication network

A neural-network-based traffic management scheme for a satellite communication network is described. The scheme consists of two levels of management. The front end of the scheme is a derivation of Kohonen's self-organization model to configure maps for the satellite communication network dynamically. The model consists of three stages. The first stage is the pattern recognition task, in which an exemplar map that best meets the current network requirements is selected. The second stage is the analysis of the discrepancy between the chosen exemplar map and the state of the network, and the adaptive modification of the chosen exemplar map to conform closely to the network requirement (input data pattern) by means of Kohonen's self-organization. On the basis of certain performance criteria, whether a new map is generated to replace the original chosen map is decided in the third stage. A state-dependent routing algorithm, which arranges the incoming call to some proper path, is used to make the network more efficient and to lower the call block rate. Simulation results demonstrate that the scheme, which combines self-organization and the state-dependent routing mechanism, provides better performance in terms of call block rate than schemes that only have either the self-organization mechanism or the routing mechanism.

Ansari, Nirwan↗

Sperry Univac speech communications technology

Technology and systems for effective verbal communication with computers were developed. A continuous speech recognition system for verbal input, a word spotting system to locate key words in conversational speech, prosodic tools to aid speech analysis, and a prerecorded voice response system for speech output are described.

Medress, Mark F.↗

Skill Assessment in Ocean Biological Data Assimilation

There is growing recognition that rigorous skill assessment is required to understand the ability of ocean biological models to represent ocean processes and distributions. Statistical analysis of model results with observations represents the most quantitative form of skill assessment, and this principle serves as well for data assimilation models. However, skill assessment for data assimilation requires special consideration. This is because there are three sets of information in the free-run model, data, and the assimilation model, which uses Data assimilation information from both the flee-run model and the data. Intercom parison of results among the three sets of information is important and useful for assessment, but is not conclusive since the three information sets are intertwined. An independent data set is necessary for an objective determination. Other useful measures of ocean biological data assimilation assessment include responses of unassimilated variables to the data assimilation, performance outside the prescribed region/time of interest, forecasting, and trend analysis. Examples of each approach from the literature are provided. A comprehensive list of ocean biological data assimilation and their applications of skill assessment, in both ecosystem/biogeochemical and fisheries efforts, is summarized.

Gregg, Watson W.↗

An Integrated Hydrological and Water Management Study of the Entire Nile River System - Lake Victoria to Nile Delta

The Nile basin River system spans 3 million km(exp 2) distributed over ten nations. The eight upstream riparian nations, Ethiopia, Eretria, Uganda, Rwanda, Burundi, Congo, Tanzania and Kenya are the source of approximately 86% of the water inputs to the Nile, while the two downstream riparian countries Sudan and Egypt, presently rely on the river's flow for most of the their needs. Both climate and agriculture contribute to the complicated nature of Nile River management: precipitation in the headwaters regions of Ethiopia and Lake Victoria is variable on a seasonal and inter-annual basis, while demand for irrigation water in the arid downstream region is consistently high. The Nile is, perhaps, one of the most difficult trans-boundary water issue in the world, and this study would be the first initiative to combine NASA satellite observations with the hydrologic models study the overall water balance in a to comprehensive manner. The cornerstone application of NASA's Earth Science Research Results under this project are the NASA Land Data Assimilation System (LDAS) and the USDA Atmosphere-land Exchange Inverse (ALEXI) model. These two complementary research results are methodologically independent methods for using NASA observations to support water resource analysis in data poor regions. Where an LDAS uses multiple sources of satellite data to inform prognostic simulations of hydrological process, ALEXI diagnoses evapotranspiration and water stress on the basis of thermal infrared satellite imagery. Specifically, this work integrates NASA Land Data Assimilation systems into the water management decision support systems that member countries of the Nile Basin Initiative (NBI) and Regional Center for Mapping of Resources for Development (RCMRD, located in Nairobi, Kenya) use in water resource analysis, agricultural planning, and acute drought response to support sustainable development of Nile Basin water resources. The project is motivated by the recognition that accurate, frequent, and spatially distributed estimates of the water balance are necessary for effective water management. This creates a challenge for watersheds that are large, include data poor regions, and/or span multiple nations. All of these descriptors apply to the Nile River basin, yet successful management of the Nile is critical for development and political stability in the region. For this reason, improved hydrological data to support cooperative water management in the Nile basin is a priority for USAID, the US State Department, the World Bank and other international organizations. In this project, the U.S. based research team is working with partners at RCMRD, Nile Basin Initiative (NBI), and their member national-level agencies to develop satellite-based land cover maps, satellite-derived evapotranspiration estimates (using the ALEXI algorithm), and NASA's Land Data Assimilation System (LDAS) customized to match identified information needs. The cornerstone applied sciences product of the project is the development of a customized "Nile LDAS" that will produce optimal estimates of hydrological states and fluxes, as vetted against the in situ observations of NBI and RCMRD member organizations and independent satellite-derived hydrological estimates. Nile LDAS will be applied to improve the reliability of emerging Decision Support Systems in applications that include drought monitoring, reservoir management, and irrigation planning. The end-users such as RCMRD, NBI, Ethiopian and Kenya Meteorological and Famine Early Warning System Network (FEWSNet) will be the eventual benefactors of this work. There will be a capacity building process involving the above end-user organizations and transfer the models and the results for these organizations to execute for future use. The team has already initiated this study and the early results of first years' work are shown. The plan is to complete this work by late 2013.

Habib, Shahid↗

Development and Use of the SPACE Computer Code for Analyzing the Space Station Electrical Power System

This special publication tells the story of the dedicated efforts of very talented individuals to create a preeminent space electrical power system modeling and simulation tool called SPACE, short for System Power Analysis for Capability Evaluation. This computer model has evolved for 30 years, withstanding the test of time and obsolescence, and garnering international recognition for its ability to simulate complex space electrical power systems. The analytical results from this model have saved millions of dollars in hardware redesign, testing, and verification for NASA's International Space Station (ISS) and its European and Russian partners. SPACE has played a pivotal role in the station's design and development and continues to support its ongoing operation. It has also extended its reach beyond the ISS to other key NASA programs, where it guides the design and planned operation of NASA's Multi-Purpose Crew Vehicle Orion and simulates electric power system operation in a dusty atmosphere on Mars' surface. The SPACE lineage was created by a core civil servant staff, supplemented by a cadre of interns and other temporary helpers. They created a tightly integrated tool that includes all phenomena that impact a solar array and battery space power system performance. SPACE is self-contained, requiring no other software modules and associated license fees. SPACE "rings true" in that is has been extensively validated with ISS on-orbit telemetry data. This report is being released as the generation of engineers who created it are nearing retirement, passing the baton to a new generation. This next generation will carry the code into the future, no doubt further evolving it to be able to assure mission planners that newly conceived systems will successfully power NASA's next endeavors. As a previous SPACE code developer and analyst, I have worked alongside many of the people mentioned in this report. The engineers who created the code, along with those just now learning it, are among the best and brightest at NASA. It is an honor to write this foreword as the present Branch Chief under which the legacy of SPACE continues to thrive.

Electrical Power System↗

SSME HPOTP post-test diagnostic system enhancement project

An assessment of engine and component health is routinely made after each test or flight firing of a space shuttle main engine (SSME). Currently, this health assessment is done by teams of engineers who manually review sensor data, performance data, and engine and component operating histories. Based on review of information from these various sources, an evaluation is made as to the health of each component of the SSME and the preparedness of the engine for another test or flight. The objective of this project is to further develop a computer program which automates the analysis of test data from the SSME high-pressure oxidizer turbopump (HPOTP) in order to detect and diagnose anomalies. This program fits into a larger system, the SSME Post-Test Diagnostic System (PTDS), which will eventually be extended to assess the health and status of most SSME components on the basis of test data analysis. The HPOTP module is an expert system, which uses 'rules-of-thumb' obtained from interviews with experts from NASA Marshall Space Flight Center (MSFC) to detect and diagnose anomalies. Analyses of the raw test data are first performed using pattern recognition techniques which result in features such as spikes, shifts, peaks, and drifts being detected and written to a database. The HPOTP module then looks for combination of these features which are indicative of known anomalies, using the rules gathered from the turbomachinery experts. Results of this analysis are then displayed via a graphical user interface which provides ranked lists of anomalies and observations by engine component, along with supporting data plots for each.

Bickmore, Timothy W.↗

Sensor fusion of range and reflectance data for outdoor scene analysis

In recognizing objects in an outdoor scene, range and reflectance (or color) data provide complementary information. Results of experiments in recognizing outdoor scenes containing roads, trees, and cars are presented. The recognition program uses range and reflectance data obtained by a scanning laser range finder, as well as color data from a color TV camera. After segmentation of each image into primitive regions, models of objects are matched using various properties.

Kweon, In SO↗

Earth Science Data Analysis in the Era of Big Data

Anyone with even a cursory interest in information technology cannot help but recognize that "Big Data" is one of the most fashionable catchphrases of late. From accurate voice and facial recognition, language translation, and airfare prediction and comparison, to monitoring the real-time spread of flu, Big Data techniques have been applied to many seemingly intractable problems with spectacular successes. They appear to be a rewarding way to approach many currently unsolved problems. Few fields of research can claim a longer history with problems involving voluminous data than Earth science. The problems we are facing today with our Earth's future are more complex and carry potentially graver consequences than the examples given above. How has our climate changed? Beside natural variations, what is causing these changes? What are the processes involved and through what mechanisms are these connected? How will they impact life as we know it? In attempts to answer these questions, we have resorted to observations and numerical simulations with ever-finer resolutions, which continue to feed the "data deluge." Plausibly, many Earth scientists are wondering: How will Big Data technologies benefit Earth science research? As an example from the global water cycle, one subdomain among many in Earth science, how would these technologies accelerate the analysis of decades of global precipitation to ascertain the changes in its characteristics, to validate these changes in predictive climate models, and to infer the implications of these changes to ecosystems, economies, and public health? Earth science researchers need a viable way to harness the power of Big Data technologies to analyze large volumes and varieties of data with velocity and veracity. Beyond providing speedy data analysis capabilities, Big Data technologies can also play a crucial, albeit indirect, role in boosting scientific productivity by facilitating effective collaboration within an analysis environment. To illustrate the effects of combining a Big Data technology with an effective means of collaboration, we relate the (fictitious) experience of an early-career Earth science researcher a few years beyond the present, interlaced and contrasted with reminiscences of its recent past (i.e., the present).

Kuo, K.-S.↗