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At least 325 records · Page 18

Structure of human MUTYH and functional profiling of cancer-associated variants reveal an allosteric network between its [4Fe-4S] cluster cofactor and active site required for DNA repair

Abstract MUTYH is a clinically important DNA glycosylase that thwarts mutations by initiating base-excision repair at 8-oxoguanine (OG):A lesions. The roles for its [4Fe-4S] cofactor in DNA repair remain enigmatic. Functional profiling of cancer-associated variants near the [4Fe-4S] cofactor reveals that most variations abrogate both retention of the cofactor and enzyme activity. Surprisingly, R241Q and N238S retained the metal cluster and bound substrate DNA tightly, but were completely inactive. We determine the crystal structure of human MUTYH bound to a transition state mimic and this shows that Arg241 and Asn238 build an H-bond network connecting the [4Fe-4S] cluster to the catalytic Asp236 that mediates base excision. The structure of the bacterial MutY variant R149Q, along with molecular dynamics simulations of the human enzyme, support a model in which the cofactor functions to position and activate the catalytic Asp. These results suggest that allosteric cross-talk between the DNA binding [4Fe-4S] cofactor and the base excision site of MUTYH regulate its DNA repair function.

Science & Technology - Other Topics↗

A search for small-scale X-ray surface brightness fluctuations in clusters of galaxies

A search for small-scale structure in the X-ray surface brightness of 20 nearby (z not greater than 0.036) clusters of galaxies is described. The technique is to compare 0.3-3.5 keV observations made with the IPC aboard the Einstein Observatory to detailed simulations of intrinsically smooth clusters. Excess fluctuations of 1-deg scale are detected in the high-count sample, but none in the low-count sample. The excess fluctuations in the high-count sample could be produced by about one source per zone emitting at about 4 x 10 to the 41st ergs/s in soft X-rays. It is suggested that low-luminosity active nuclei in the cluster galaxies or a hot interstellar medium retained by some galaxies are the most likely origins of this emission.

Soltan, Andrzej↗

SPT-3G D1: Compton-$y$ maps using data from the SPT-3G and Planck surveys

We present thermal Sunyaev-Zel'dovich (tSZ) Compton-$y$ parameter maps constructed from two years (2019-2020) of observations with the South Pole Telescope (SPT) third-generation camera, SPT-3G, combined with data from the Planck satellite. Using a linear combination (LC) pipeline, we obtain a suite of reconstructions that explore different trade-offs between statistical sensitivity and suppression of astrophysical contaminants, including minimum-variance, CMB-deprojected, and CIB-deprojected $y$-maps. We validate these maps through different statistical techniques such as auto- and cross-power spectra with large-scale structure tracers as well as stacking on cluster locations. These tests are used to understand the balance between noise and astrophysical foreground residuals (such as the CIB) in combination with the recovery of the tSZ signal for different maps. For example, results from stacking at the location of clusters confirm the robustness of the recovered tSZ signal over the $\sim 1500\: {\rm deg}^2$ SPT-3G survey field used in this analysis. The high-resolution and low-noise maps produced here provide an important cosmological tool for future studies, including measurements of the Compton-$y$ map power spectrum, cross-correlations with other tracers of the large-scale structure, detailed modeling of cluster pressure profiles, and study of the thermodynamic state of the baryons in the Universe.

Maniyar, A. S. [Harvard-Smithsonian Ctr. Astrophys↗

Measuring the Mass Distribution in Z is Approximately 0.2 Cluster Lenses with XMM, HST and CFHT

Being the most massive gravitationally bound objects in the Universe, clusters of galaxies are prime targets for studies of structure formation and evolution. Specifically the comoving space density of virialized clusters of a given mass (or X-ray temperature), but also the frequency and degree of substructure, as well as the shape of the cluster mass profile are quantities whose current values and evolution as a function of lookback time can provide important constraints on the cosmological and physical parameters of structure formation theories. The project funded by NASA grant NAG 5-10041 intended to take such studies to a new level by combining observations of a well-selected cluster sample by three state-of-the-art telescopes: HST, to accurately measure the mass distribution in the cluster core (approx. 0.5 h(sup -1)(sub 50) Mpc) via strong gravitational lensing; CFHT, to measure the large scale mass distribution out to approx. 3 Mpc via weak lensing; and XMM, to measure the gas density and temperature distribution accurately on intermediate scales < 1.5 Mpc. XMM plays a pivotal role in this context as the calibration of X-ray mass measurements through accurate, spatially resolved X-ray temperature measurements (particularly in the cosmologically most sensitive range of kT> 5 keV) is central to the questions outlined above. This set of observations promised to yield the best cluster mass measurements obtained so far for a representative sample, thus allowing us to: 1) Measure the high-mass end of the local cluster mass function; 2) Test predictions of a universal cluster mass profile; 3) calibrate the mass-temperature and temperature-luminosity relations for clusters and the scatter around these relations, which is vital for studies of cluster evolution using the X-ray temperature and X-ray luminosity functions.

Source record↗

Globular cluster luminosity functions

The use of luminosity functions in determining the helium content, age, and initial mass function of globular clusters, and in testing the stellar structure theory is reviewed. The main sequence turnoff and subgiant phases are examined. The Thomas (1967) peak in the luminosity function and the gap near the base of the giant branch of globular clusters found in the CM are discussed as probes of stellar structure. Research in the area of faint star photometry, dealing with the lower main sequence luminosity function and the interplanetary magnetic field is presented.

Demarque, Pierre↗

Gravitational collapse of small-scale structure as the origin of the Lyman-alpha forest

If gravitational clustering is a hierarchical process, the present large-scale structure of the galaxy distribution implies that structures on smaller scales must have formed at high redshift. We simulate the formation of small-scale structure (average cell mass: (delta) bar m(sub b) = 10(sup 4.2) solar mass) and the evolution of photoionized gas, in the specific case of the CDM + Lambda model. The photoionized gas has a natural minimal scale of collapse, the Jeans scale (m(sub b,J) is approximately equal to 10(exp 9) solar mass). We find that low column density (N(sub HI) is less than or equal to 10(exp 14)/sq cm) lines originate in regions resembling Zel'dovich pancakes, where gas with overdensities in the range 3-30 is enclosed by two shocks but is typically reexpanding at approximately the Hubble velocity. However, higher column density lines stem from more overdense regions where the shocked gas is cooling. We show that this model can probably account for the observed number of lines, their distribution in column density and b-parameters, as well as the cloud physical sizes as observed in gravitationally lensed quasars. We find a redshift evolution that is too steep; however, this may be due to insufficient dynamical range in the simulation or because the specific model is incorrect. The model predicts that high signal-to-noise observations should find systematic deviations from Voigt profiles, mainly in the form of broad wings in the line profiles, and that a fluctuating Gunn-Peterson effect will be detected, which can be modeled as a superposition of weak lines with a wide range of b-parameters.

Cen, Renyue↗

The ages of globular cluster stars - Effects of rotation on pre-main-sequence, main-sequence, and turnoff evolution

Evolutionary sequences for low-metallicity stars (Z ranging from 0.001 to 0.0001) to study the effects of internal stellar rotation on the evolutionary time scales in the pre-main sequence, the main sequence (MS), and around the MS turnoff. Although a substantial amount of angular momentum remains in the interior, rotation is only a minor perturbation on the structure and ages of globular cluster stars. Even models with large initial angular momenta have MS lifetimes that are within 1 percent of those of standard models of the same mass and composition. Therefore, rotation does not affect age estimates of globular clusters from isochrone fitting. Furthermore, the models suggest that because rotation is not likely to affect horizontal-branch (HB) morphology, it does not affect significantly age estimates from the Delta-V method. Nevertheless, the internal angular momentum in the models is consistent with observations of surface rotational velocities on the HB, which require the preservation of a large reservoir of internal angular momentum.

Deliyannis, Constantine P.↗

The energy spectrum of the Perseus cluster of galaxies

A one-dimensional focusing X-ray telescope has been used to measure the spatial structure and energy spectrum of the Perseus cluster in the 0.5-4.5 keV X-ray range. A significant variation is observed in the X-ray spectrum from different regions of the cluster, indicating different possible emission mechanisms. The spectrum from the region centered on NGC 1275 appears harder and more cut off at low energy than that of the remainder of the cluster.

Wolff, R. S.↗

Self-interacting Dark Matter, Core Collapse, and the Galaxy–Galaxy Strong-lensing Discrepancy

Abstract Gravitational lensing by galaxy clusters has emerged as a powerful tool to probe the standard cold dark matter (CDM) paradigm of structure formation in the Universe. Despite the remarkable explanatory power of CDM on large scales, tensions with observations on small scales have been reported. Recent studies find that the observational cross section for galaxy–galaxy strong lensing (GGSL) in clusters exceeds the CDM prediction by more than an order of magnitude and persists even after rigorous examination of various possible systematics. We investigate the impact of modifying the internal structure of cluster dark matter subhalos on GGSL and report that altering the inner density profile, given by r γ , to steeper slopes with γ > 2.5 can alleviate the GGSL discrepancy. This is steeper than slopes obtained with the inclusion of the contribution of baryons to the inner regions of these subhalos. Deviating from the γ ~ 1.0 cusps that CDM predicts, these steeper slopes could arise in models of self-interacting dark matter undergoing core collapse. Our results motivate additional study of subhalo core collapse in dense cluster environments.

Dutra, Isaque (ORCID:0000000170404930)↗

Galaxy cluster matter profiles - I. Self-similarity, mass calibration, and observable-mass relation validation employing cluster mass posteriors

We present a study of the weak lensing inferred matter profiles ΔΣ(R) of 698 South Pole Telescope (SPT) thermal Sunyaev-Zel’dovich effect (tSZE) selected and MCMF optically confirmed galaxy clusters in the redshift range 0.25 < z < 0.94 that have associated weak gravitational lensing shear profiles from the Dark Energy Survey (DES). Rescaling these profiles to account for the mass dependent size and the redshift dependent density produces average rescaled matter profiles ΔΣ(R/R200c)/(ρcritR200c) with a lower dispersion than the unscaled ΔΣ(R) versions, indicating a significant degree of self-similarity. Galaxy clusters from hydrodynamical simulations also exhibit matter profiles that suggest a high degree of self-similarity, with RMS variation among the average rescaled matter profiles with redshift and mass falling by a factor of approximately six and 23, respectively, compared to the unscaled average matter profiles. We employed this regularity in a new Bayesian method for weak lensing mass calibration that employs the so-called cluster mass posterior P(M200|ζ̂, λ̂, z), which describes the individual cluster masses given their tSZE (ζ̂) and optical (λ̂, z) observables. This method enables simultaneous constraints on richness λ-mass and tSZE detection significance ζ-mass relations using average rescaled cluster matter profiles. We validated the method using realistic mock datasets and present observable-mass relation constraints for the SPT×DES sample, where we constrained the amplitude, mass trend, redshift trend, and intrinsic scatter. Our observable-mass relation results are in agreement with the mass calibration derived from the recent cosmological analysis of the SPT×DES data based on a cluster-by-cluster lensing calibration. Our new mass calibration technique offers a higher efficiency when compared to the single cluster calibration technique. We present new validation tests of the observable-mass relation that indicate the underlying power-law form and scatter are adequate to describe the real cluster sample but that also suggest a redshift variation in the intrinsic scatter of the λ-mass relation may offer a better description. In addition, the average rescaled matter profiles offer high signal-to-noise ratio (S/N) constraints on the shape of real cluster matter profiles, which are in good agreement with available hydrodynamical ΛCDM simulations. This high S/N profile contains information about baryon feedback, the collisional nature of dark matter, and potential deviations from general relativity.Key words: gravitational lensing: weak / galaxies: clusters: general / large-scale structure of Universe

79 ASTRONOMY AND ASTROPHYSICS↗

Structural regulation-induced Li-electron disentanglement for stabilized oxygen redox of Li-excess disordered rock-salt cathode materials

Since the discovery of its electrochemical activity, Li-excess disordered rock-salt (DRX) cathode material has received worldwide attention as it sets up a new way to exploit oxygen redox beyond the conventional layered structure with late-3d transition metals. However, the intricate structure-function relationship in the disordered lattice of the DRX material fogs the researcher's lens on the underlying redox mechanisms. Here, in this study, we employ a synergistic approach combining neutron total scattering with reverse Monte Carlo modeling and density functional theory calculations to unravel the landscape of oxygen redox reactions in DRX. Redox activities are evaluated in diverse oxygen clusters (OLi x TM 6-x ) and the spatial distribution of these clusters in the model DRX structure (Li 1.16 Ti 0.37 Ni 0.37 Nb 0.1 O 2 and Li 1.2 Ti 0.35 Ni 0.35 Nb 0.1 O 1.8 F 0.2 ) is explicitly determined. The results unveil that by regulating the short-range ordering between cations, fluorine atoms can effectively decouple the location of Li extraction and electron depletion. Such disentanglement between the Li reservoir and electron reservoir in the DRX lattice could play a pivotal role in protecting the oxidized oxygen and preserving the lattice framework during cycling. Through a tentatively designed non-fluorinated DRX oxide realizing similar Li-electron decoupling, an obvious enhancement of the cycling capability can be achieved without compromising the capacity release.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Vlasov Simulation of Electrostatic Solitary Structures in Multi-Component Plasmas

Electrostatic solitary structures have been observed in the Earth's magnetosheath by the Cluster spacecraft. Recent theoretical work has suggested that these solitary structures are modeled by electron acoustic solitary waves existing in a four-component plasma system consisting of core electrons, two counter-streaming electron beams, and one species of background ions. In this paper, the excitation of electron acoustic waves and the formation of solitary structures are studied by means of a one-dimensional electrostatic Vlasov simulation. The present result first shows that either electron acoustic solitary waves with negative potential or electron phase-space holes with positive potential are excited in four-component plasma systems. However, these electrostatic solitary structures have longer duration times and higher wave amplitudes than the solitary structures observed in the magnetosheath. The result indicates that a high-speed and small free energy source may be needed as a fifth component. An additional simulation of a five-component plasma consisting of a stable four-component plasma and a weak electron beam shows the generation of small and fast electron phase-space holes by the bump-on-tail instability. The physical properties of the small and fast electron phase-space holes are very similar to those obtained by the previous theoretical analysis. The amplitude and duration time of solitary structures in the simulation are also in agreement with the Cluster observation.

magnetohydrodynamics (MHD)↗

Unconventional low temperature decomposition of a saturated hydrocarbon over atomically-dispersed titanium-aluminum-boron catalyst

Sonochemically-synthesized atomically-dispersed titanium-aluminum-boron nanopowder (TiAlB NP) exhibits a remarkable low-temperature catalytic activation of aliphatic C-H bonds at 750 K followed by C-C bond activation thus emerging as a potent low-cost alternative to expensive platinum group metals. Here, the model saturated hydrocarbon, exo-tetrahydrodicyclopentadiene (C10H16), undergoes catalytic decomposition on TiAlB NPs in a chemical microreactor to produce 1,3-cyclopentadiene (c-C5H6), cyclopentene (c-C5H8), and molecular hydrogen (H2) as detected in situ via isomer-selective, single-photon ionization time-of-flight mass spectrometry. Extensive electronic structure theory calculations on model clusters of the catalyst decode a unique synergy among the atomic constituents of the catalyst and chemical bonding in this stepwise, retro Diels Alder reaction: Ti, although insensitive to C-H activation in its metallic state, initiates the catalysis via chemisorption of the hydrocarbon, adjacent B centers readily abstract hydrogen atoms and store them during the catalytic cycle, while Al stabilizes the catalyst structure yet providing space for critical docking sites for the departing hydrocarbons.

Biswas, Souvick↗

The Physics of Cooling Flow Clusters with Central Radio Sources

Central galaxies in rich clusters are the sites of cluster cooling flows, with large masses of gas cooling through part of the X-ray band. Many of these galaxies host powerful radio sources. These sources can displace and compress the X-ray gas leading to enhanced cooling and star formation. We observed the bright cooling flow Abell 2626 with a strangely distorted central radio source. We wished to understand the interaction of radio and X-ray thermal plasma, and to determine the dynamical nature of this cluster. One aim was to constrain the source of additional pressure in radio "holes" in the X-ray emission needed to support overlying shells of X-ray gas. We also aimed to study the problem of the lack of kT < 1-2 keV gas in cooling flows by searching for abundance inhomogeneities, heating from the radio source, and excess absorption. We also have a Chandra observation of this cluster. There were problems with the pipeline processing of this data due to a telemetry dropout. We are publishing the Chandra and XMM data together. Delays with the Chandra data have slowed up the publication. At the center of the cluster, there is a complex interaction of the odd, Z-shaped radio source, and the X-ray plasma. However, there are no clear radio bubbles. Also, the cluster SO galaxy IC 5337, which is projected 1.5 arcmin west of the cluster center, has unusual tail-like structures in both the radio and X-ray. It appears to be falling into the cluster center. There is a hot, probably shocked region of gas to the southwest, which is apparently due to the merger of a subcluster in this part of the system. There is also a merging subcluster to the northeast. The axes of these two mergers agrees with a supercluster filament structure.

Sarazin, Craig L.↗

Wide-Field Hubble Space Telescope Observations of the Globular Cluster System in NGC 1399*

We present a comprehensive high spatial resolution imaging study of globular clusters (GCs) in NGC 1399, thecentral giant elliptical cD galaxy in the Fornax galaxy cluster, conducted with the Advanced Camera for Surveys(ACS) aboard theHubble Space Telescope(HST).Using a novel technique to construct drizzled point-spreadfunction libraries for HSTACS data, we accurately determine the fidelity of GC structural parameter measurementsfrom detailed artificial star cluster experiments and show the superior robustness of the GC half-light radius,rh,compared with other GC structural parameters, such as King core and tidal radius. The measurement ofrhfor themajor fraction of the NGC 1399 GC system reveals a trend of increasingrhversus galactocentric distance,Rgal,out to about 10 kpc and a flat relation beyond. This trend is very similar for blue and red GCs, which are found tohave a mean size ratio ofrh,redrh,blue0.820.11 at all galactocentric radii from the core regions of the galaxyout to40 kpc. This suggests that the size difference between blue and red GCs is due to internal mechanismsrelated to the evolution of their constituent stellar populations. Modeling the mass density profile of NGC 1399shows that additional external dynamical mechanisms are required to limit the GC size in the galaxy halo regionstorh2 pc. We suggest that this may be realized by an exotic GC orbit distribution function, an extended darkmatter halo, andor tidal stress induced by the increased stochasticity in the dwarf halo substructure at largergalactocentric distances. We compare our results with the GCrhdistribution functions in various galaxies and findthat the fraction of extended GCs withrh5 pc is systematically larger in late-type galaxies compared with GCsystems in early-type galaxies. This is likely due to the dynamically more violent evolution of early-type galaxies.We match our GCrhmeasurements with radial velocity data from the literature and split the resulting sample at themedianrhvalue into compact and extended GCs. We find that compact GCs show a significantly smaller line-of-sight velocity dispersion,cmp22525 km s1, than their extended counterparts,ext31721 km s1.Considering the weaker statistical correlation in the GCrhcolor and the GCrhRgalrelations, the more significantGC sizedynamics relation appears to be astrophysically more relevant and hints at the dominant influence of theGC orbit distribution function on the evolution of GC structural parameters.

Hubble↗

Discovery of correlated electron molecular orbital materials using graph representations

Correlated electron molecular orbital (CEMO) materials host emergent electronic states built from molecular orbitals localized over clusters of transition metal ions yet have historically been discovered sporadically and generally been treated as isolated case studies. Here we establish CEMO materials as a systematically discoverable class and introduce a graph-based framework to identify, classify, and organize transition-metal cluster motifs in inorganic solids. Starting from crystal structures in the Materials Project, we construct transition metal connectivity graphs, extract cluster motifs using a bond-cutting algorithm, and determine cluster point groups, effective cluster sublattice dimensionality, and translational symmetry. Applying this approach in a high-throughput screen of 34,548 compounds yields 5,306 cluster-containing materials, including 2,627 stable or metastable compounds with isolated clusters and 984 materials featuring mixed-metal clusters. The resulting dataset reveals symmetry and element dependent trends in cluster formation. By integrating cluster classification with flat band lattice topology and battery-relevant information, we provide further relevant information to multiple scientific communities. The accompanying open dataset, Cluster Finder software, and interactive web platform enable systematic exploration of cluster driven electronic phenomena and establish a general pathway for discovering correlated quantum materials and functional materials with cluster-based or extended metal-metal bonding in inorganic solids.

Akhond, Md. Rajbanul [Department of Chemistry, 800↗

An observational view of large scale structure

A summary of recent observations of galaxy clustering is presented, including a brief review of redshift maps and galaxy clustering statistics. Simple arguments are presented that argue the underlying mass fluctuations are most likely associated with a clustering scale no larger than that of individual galaxies. The acceleration of the local group from the comoving frame of the universe and its connection to the microwave dipole anisotropy are also discussed. A final topic for consideration is the existence of large voids and clusters, and whether they are consistent with Gaussian initial conditions. The extreme size and depth of the Bootes void, if real, do present a puzzle. Finally, future directions for observational study of large scale structure are discussed.

Davis, Marc↗

Evaluating Mineral Lattices as Evolutionary Proxies for Metalloprotein Evolution

Protein coordinated iron-sulfur clusters drive electron flow within metabolic pathways for organisms throughout the tree of life. It is not known how iron-sulfur clusters were first incorporated into proteins. Structural analogies to iron-sulfde minerals present on early Earth, suggest a connection in the evolution of both proteins and minerals. The availability of large protein and mineral crystallographic structure data sets, provides an opportunity to explore co-evolution of proteins and minerals on a large-scale using informatics approaches. However, quantitative comparisons are confounded by the infnite, repeating nature of the mineral lattice, in contrast to metal clusters in proteins, which are fnite in size. We address this problem using the Niggli reduction to transform a mineral lattice to a fnite, unique structure that when translated reproduces the crystal lattice. Protein and reduced mineral structures were represented as quotient graphs with the edges and nodes corresponding to bonds and atoms, respectively. We developed a graph theory-based method to calculate the maximum common connected edge subgraph (MCCES) between mineral and protein quotient graphs. MCCES can accommodate differences in structural volumes and easily allows additional chemical criteria to be considered when calculating similarity. To account for graph size differences, we use the Tversky similarity index. Using consistent criteria, we found little similarity between putative ancient iron-sulfur protein clusters and iron-sulfur mineral lattices, suggesting these metal sites are not as evolutionarily connected as once thought. We discuss possible evolutionary implications of these findings in addition to suggesting an alternative proxy, mineral surfaces, for better understanding the coevolution of the geosphere and biosphere

Kenneth N. McGuinness↗