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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 325 records · Page 18
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Search for a 3+1 Sterile Neutrino with the MicroBooNE Experiment using Deep-Learning-Based Reconstruction

In this note we present the methods and sensitivity for a search for sterile neutrinos based on the 3+1 model in the MicroBooNE experiment. The recently released results by MicroBooNE show no sign of the MiniBooNE/LSND low-energy-excess anomaly. The 3+1 model examined here expands on the standard model of neutrinos by adding a fourth neutrino flavor and is not necessarily ruled out by the lack of a low energy excess. The search presented relies on Deep-Learning-based reconstruction tools and looks for charged current quasi-elastic-like (CCQE-like) events kinematically consistent with a 2-body interaction. Using two orthogonal samples of CCQE electron neutrino events and CCQE muon neutrino events, we test this model allowing for electron neutrino appearance, electron neutrino disappearance, and muon neutrino disappearance. We present the sensitivity to the oscillation parameters using the Wilks’ theorem exclusion confidence levels. We demonstrate the use of a minimizer to find the best fit and discuss the effect of using a Feldman-Cousins’ procedure instead of Wilks’ theorem to determine sensitivity.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2015

Molecular mechanism of the dual activity of 4EGI-1: Dissociating eIF4G from eIF4E but stabilizing the binding of unphosphorylated 4E-BP1

The eIF4E-binding protein (4E-BP) is a phosphorylation-dependent regulator of protein synthesis. The nonphosphorylated or minimally phosphorylated form binds translation initiation factor 4E (eIF4E), preventing binding of eIF4G and the recruitment of the small ribosomal subunit. Signaling events stimulate serial phosphorylation of 4E-BP, primarily by mammalian target of rapamycin complex 1 (mTORC1) at residues T 37 /T 46 , followed by T 70 and S 65 . Hyperphosphorylated 4E-BP dissociates from eIF4E, allowing eIF4E to interact with eIF4G and translation initiation to resume. Because overexpression of eIF4E is linked to cellular transformation, 4E-BP is a tumor suppressor, and up-regulation of its activity is a goal of interest for cancer therapy. A recently discovered small molecule, eIF4E/eIF4G interaction inhibitor 1 (4EGI-1), disrupts the eIF4E/eIF4G interaction and promotes binding of 4E-BP1 to eIF4E. Structures of 14- to 16-residue 4E-BP fragments bound to eIF4E contain the eIF4E consensus binding motif, 54 YXXXXLΦ 60 (motif 1) but lack known phosphorylation sites. We report in this paper a 2.1-Å crystal structure of mouse eIF4E in complex with m 7 GTP and with a fragment of human 4E-BP1, extended C-terminally from the consensus-binding motif (4E-BP1 50–84 ). The extension, which includes a proline-turn-helix segment (motif 2) followed by a loop of irregular structure, reveals the location of two phosphorylation sites (S 65 and T 70 ). Our major finding is that the C-terminal extension (motif 3) is critical to 4E-BP1–mediated cell cycle arrest and that it partially overlaps with the binding site of 4EGI-1. Finally, the binding of 4E-BP1 and 4EGI-1 to eIF4E is therefore not mutually exclusive, and both ligands contribute to shift the equilibrium toward the inhibition of translation initiation.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

A model for discrete fracture-clay rock interaction incorporating electrostatic effects on transport

Abstract A model based on the code CrunchClay is presented for a fracture-clay matrix system that takes electrostatic effects on transport into account. The electrostatic effects on transport include those associated with the development of a diffusion potential as captured by the Nernst-Planck equation, and the formation of a diffuse layer bordering negatively charged clay particles within which partial anion exclusion occurs. The model is based on a dual continuum formulation that accounts for diffuse layer and bulk water pore space, providing a more flexible framework than is found in the classical mean electrostatic potential models. The diffuse layer model is obtained by volume averaging ion concentrations in the Poisson-Boltzmann equation, but also includes the treatment of longitudinal transport within this continuum. The calculation of transport within the bulk and diffuse layer porosity is based on a new formulation for the Nernst-Planck equation that considers averaging of diffusion coefficients and accumulation factors at grid cell interfaces. Equations for function residuals and the associated Jacobian matrix are presented such that the system of nonlinear differential-algebraic equations can be solved with Newton’s method. As an example, we consider a 2D system with a single discrete fracture within which flow and advective transport occurs that is coupled to diffusion in the clay-rich matrix. The simulation results demonstrate the lack of retardation for anions (e.g., 36 Cl − ) of the contaminant plume within the fracture flow system because they are largely excluded from the charged clay rock, while the migration of cations (e.g., 90 Sr ++ ) is more strongly attenuated. The diffusive loss of divalent cations in particular from the fracture is accentuated by their accumulation in the diffuse layer within the clay-rich matrix.

58 GEOSCIENCES↗
DOE OSTI2016

HDAC9 regulates the alternative lengthening of telomere (ALT) pathway via the formation of ALT-associated PML bodies

Cancer cells overcome cellular senescence by activating the telomere maintenance mechanism, which can be either through telomerase or the alternative lengthening of telomeres (ALT). Being exclusive to cancer cells, targeting ALT is a more promising route for the development of drugs against cancer. The histone deacetylase (HDAC) family plays significant roles in various cellular processes. In addition to the regulation of gene expression, HDACs are also known to directly interact with many proteins. We focused on this family, and found that HDAC9 was up-regulated in ALT-positive cells. In ALT-positive cells treated with HDAC9 siRNA, there was a decrease in the telomere replicative capacity, which was evident from the C-circles assay. Furthermore, the formation of ALT-associated promyelocytic leukemia (PML) nuclear bodies (APBs) was inhibited by HDAC9 knockdown. Based on this study, it is suggested that HDAC9 regulates the formation of APBs and could be a candidate for the target of ALT-cancer therapy. - Highlights: • HDAC9 is highly expressed in ALT-positive cells. • Knockdown of HDAC9 inhibits C-circle abundance in ALT-positive cells. • Knockdown of HDAC9 inhibits APBs formation in ALT-positive cells.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

LLE-Annual report input

In FY18, an LLNL/GA/Michigan University team carried out the project “Exploring pair plasmas and their applications” with 2 LBS shot days on OMEGA EP. The campaign used an EP short pulse beam to produce jets of electron-positron antimatter pairs while the 2nd short pulse beam was used to producing protons to diagnose the laser-target interactions. The experiments focused on 1) inhensing the pair yield using nano-structure targets and 2) collimating/focusing positron jets through curved sheath potential from shaped target surface. The experiments successfully demonstrated both the yield enhensement and the positron focusing. The data provided basis futrue experiments on labortary astrophysics using the pair jet – plasma interaction to drive beam instabilities. A total of 14 shots were performed in the fiscal year. The EP short pulse beams (~1 kJ in 10 ps) irradiated targets of 1 mm thick Au targets, with and without the nano-structure on the laser interaction surface. It was found that for the same laser energy, positron yields and acceleration both were increased dramatically by using nano-structure. This finding is important to the future experiments and applications using laser pair jets. Previous experiments used gold targets almost exclusively. It was also found that a hemispherical shaped backsurface can focuing the positron jets through the sheath field – like that observed in proton focusing. This observation is important as it demonstrated that higher pair density can be achieved by reducing their volume, which may enable the development of instablities predicted by theory. The prior experiments showed that quasi-monoenergetic relativistic positron jets are formed during high-intensity irradiation of thick gold targets, and that these jets can be strongly collimated using the magnetized-inertial fusion electrical delivery system (MIFEDS). The external field produces a 40-fold increase in the peak positron and electron signal [4]. The positron yield was found to scale as the square of the laser energy. The FY15 results revealed another dimension of scaling on the target materials. The favorable scaling would enable the laboratory study of relativistic pair plasmas that are important to understanding some of the most exotic and energetic systems in the universe.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2016

Neutron structures of the Helicobacter pylori 5'-methylthioadenosine nucleosidase highlight proton sharing and protonation states

MTAN (5'-methylthioadenosine nucleosidase) catalyzes the hydrolysis of the N-ribosidic bond of a variety of adenosine-containing metabolites. The Helicobacter pylori MTAN (HpMTAN) hydrolyzes 6-amino-6-deoxyfutalosine in the second step of the alternative menaquinone biosynthetic pathway. Substrate binding of the adenine moiety is mediated almost exclusively by hydrogen bonds, and the proposed catalytic mechanism requires multiple proton-transfer events. Of particular interest is the protonation state of residue D198, which possesses a pKa above 8 and functions as a general acid to initiate the enzymatic reaction. In this study we present three corefined neutron/X-ray crystal structures of wild-type HpMTAN cocrystallized with S-adenosylhomocysteine (SAH), Formycin A (FMA), and (3R,4S)-4-(4-Chlorophenylthiomethyl)-1-[(9-deaza-adenin-9-yl)methyl]-3-hydroxypyrrolidine (p-ClPh-Thio-DADMe-ImmA) as well as one neutron/X-ray crystal structure of an inactive variant (HpMTAN-D198N) cocrystallized with SAH. These results support a mechanism of D198 pKa elevation through the unexpected sharing of a proton with atom N7 of the adenine moiety possessing unconventional hydrogen-bond geometry. Additionally, the neutron structures also highlight active site features that promote the stabilization of the transition state and slight variations in these interactions that result in 100-fold difference in binding affinities between the DADMe-ImmA and ImmA analogs.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2020

Visualizing a viral genome with contrast variation small angle X-ray scattering

Despite the threat to human health posed by some single-stranded RNA viruses, little is understood about their assembly. The goal of this work is to introduce a new tool for watching an RNA genome direct its own packaging and encapsidation by proteins. Contrast variation small-angle X-ray scattering (CV-SAXS) is a powerful tool with the potential to monitor the changing structure of a viral RNA through this assembly process. The proteins, though present, do not contribute to the measured signal. As a first step in assessing the feasibility of viral genome studies, the structure of encapsidated MS2 RNA was exclusively detected with CV-SAXS and compared with a structure derived from asymmetric cryo-EM reconstructions. Additional comparisons with free RNA highlight the significant structural rearrangements induced by capsid proteins and invite the application of time-resolved CV-SAXS to reveal interactions that result in efficient viral assembly.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Modeling protected species distributions and habitats to inform siting and management of pioneering ocean industries: A case study for Gulf of Mexico aquaculture

Marine Spatial Planning (MSP) provides a process that uses spatial data and models to evaluate environmental, social, economic, cultural, and management trade-offs when siting (i.e., strategically locating) ocean industries. Aquaculture is the fastest-growing food sector in the world. The United States (U.S.) has substantial opportunity for offshore aquaculture development given the size of its exclusive economic zone, habitat diversity, and variety of candidate species for cultivation. However, promising aquaculture areas overlap many protected species habitats. Aquaculture siting surveys, construction, operations, and decommissioning can alter protected species habitat and behavior. Additionally, aquaculture-associated vessel activity, underwater noise, and physical interactions between protected species and farms can increase the risk of injury and mortality. In 2020, the U.S. Gulf of Mexico was identified as one of the first regions to be evaluated for offshore aquaculture opportunities as directed by a Presidential Executive Order. We developed a transparent and repeatable method to identify aquaculture opportunity areas (AOAs) with the least conflict with protected species. First, we developed a generalized scoring approach for protected species that captures their vulnerability to adverse effects from anthropogenic activities using conservation status and demographic information. Next, we applied this approach to data layers for eight species listed under the Endangered Species Act, including five species of sea turtles, Rice’s whale, smalltooth sawfish, and giant manta ray. Next, we evaluated four methods for mathematically combining scores (i.e., Arithmetic mean, Geometric mean, Product, Lowest Scoring layer) to generate a combined protected species data layer. The Product approach provided the most logical ordering of, and the greatest contrast in, site suitability scores. Finally, we integrated the combined protected species data layer into a multi-criteria decision-making modeling framework for MSP. This process identified AOAs with reduced potential for protected species conflict. These modeling methods are transferable to other regions, to other sensitive or protected species, and for spatial planning for other ocean-uses.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Measurements of $t\overline tH$ Production and the CP Structure of the Yukawa Interaction between the Higgs Boson and Top Quark in the Diphoton Decay Channel

The first observation of the t t ¯ H process in a single Higgs boson decay channel with the full reconstruction of the final state ( H → γ γ ) is presented, with a significance of 6.6 standard deviations ( σ ). The C P structure of Higgs boson couplings to fermions is measured, resulting in an exclusion of the pure C P -odd structure of the top Yukawa coupling at 3.2 σ . The measurements are based on a sample of proton-proton collisions at a center-of-mass energy s = 13 TeV collected by the CMS detector at the LHC, corresponding to an integrated luminosity of 137 fb – 1 . The cross section times branching fraction of the t t ¯ H process is measured to be σ t t ¯ H B γ γ = 1.56 – 0.32 + 0.34 fb , which is compatible with the standard model prediction of 1.13 – 0.11 + 0.08 fb . The fractional contribution of the C P -odd component is measured to be f C P H t t = 0.00 ± 0.33 .

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2024

Hydrogen–Deuterium Exchange Mass Spectrometry Identifies Local and Long-Distance Interactions within the Multicomponent Radical SAM Enzyme, PqqE

Interactions among proteins and peptides are essential for many biological activities including the tailoring of peptide substrates to produce natural products. The first step in the production of the bacterial redox cofactor pyrroloquinoline quinone (PQQ) from its peptide precursor is catalyzed by a radical SAM (rSAM) enzyme, PqqE. We describe the use of hydrogen–deuterium exchange mass spectrometry (HDX-MS) to characterize the structure and conformational dynamics in the protein–protein and protein–peptide complexes necessary for PqqE function. HDX-MS-identified hotspots can be discerned in binary and ternary complex structures composed of the peptide PqqA, the peptide-binding chaperone PqqD, and PqqE. Structural conclusions are supported by size-exclusion chromatography coupled to small-angle X-ray scattering (SEC-SAXS). HDX-MS further identifies reciprocal changes upon the binding of substrate peptide and S-adenosylmethionine (SAM) to the PqqE/PqqD complex: long-range conformational alterations have been detected upon the formation of a quaternary complex composed of PqqA/PqqD/PqqE and SAM, spanning nearly 40 Å, from the PqqA binding site in PqqD to the PqqE active site Fe 4 S 4 . Interactions among the various regions are concluded to arise from both direct contact and distal communication. The described experimental approach can be readily applied to the investigation of protein conformational communication among a large family of peptide-modifying rSAM enzymes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Search for new particles in events with a hadronically decaying W or Z boson and large missing transverse momentum at $\sqrt{s}$ = 13 TeV using the ATLAS detector

A search is presented for new particles produced in proton-proton collisions at a centre-of-mass energy of 13 TeV that result in final states comprising a massive vector ( W or Z ) boson that decays hadronically and large missing transverse momentum. The data sample was collected with the ATLAS experiment at the Large Hadron Collider from 2015 to 2018 and corresponds to an integrated luminosity of 140 fb - 1 . No significant excess over the Standard Model expectation is observed. Model-independent 95% confidence-level limits on the visible cross-section that range from 0.3 fb to 79.5 fb are obtained for non-Standard-Model processes. Exclusion limits are also presented for models with axion-like particles, for two-Higgs-doublet models with a pseudo-scalar mediator between the Standard Model and the dark sector, for the invisible decay of the Higgs boson and for pair-produced weakly interacting dark matter candidates.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2018

Origin of the Two Bands in the B800 Ring and Their Involvement in the Energy Transfer Network of Allochromatium vinosum

Bacterial photosynthesis features robust and adaptable energy-harvesting processes in which light-harvesting proteins play a crucial role. The peripheral light-harvesting complex of the purple bacterium Allochromatium vinosum is particularly distinct, featuring a double peak structure in its B800 absorption band. Two hypotheses—not necessarily mutually exclusive—concerning the origin of this splitting have been proposed; either two distinct B800 bacteriochlorophyll site energies are involved, or an excitonic dimerization of bacteriochlorophylls within the B800 ring takes place. Through the use of two-dimensional electronic spectroscopy, we present unambiguous evidence that excitonic interaction shapes the split band. We further identify and characterize all of the energy transfer pathways within this complex by using a global kinetic fitting procedure. Our approach demonstrates how the combination of two-dimensional spectral resolution and self-consistent fitting allows for extraction of information on light-harvesting processes, which would otherwise be inaccessible due to signal congestion.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Lepton-nucleus cross section measurements for DUNE with the LDMX detector

We point out that the LDMX (Light Dark Matter eXperiment) detector design, conceived to search for sub-GeV dark matter, will also have very advantageous characteristics to pursue electron-nucleus scattering measurements of direct relevance to the neutrino program at DUNE and elsewhere. These characteristics include a 4-GeV electron beam, a precision tracker, electromagnetic and hadronic calorimeters with near 2 π azimuthal acceptance from the forward beam axis out to ~ 40 ° angle, and low reconstruction energy threshold. LDMX thus could provide (semi)exclusive cross section measurements, with detailed information about final-state electrons, pions, protons, and neutrons. We compare the predictions of two widely used neutrino generators ( genie , g i buu ) in the LDMX region of acceptance to illustrate the large modeling discrepancies in electron-nucleus interactions at DUNE-like kinematics. We argue that discriminating between these predictions is well within the capabilities of the LDMX detector.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2024

Search for a Sub-eV Sterile Neutrino Using Daya Bay’s Full Dataset

This Letter presents results of a search for the mixing of a sub-eV sterile neutrino with three active neutrinos based on the full data sample of the Daya Bay Reactor Neutrino Experiment, collected during 3158 days of detector operation, which contains 5.55 × 106 reactor $\overline{v}$ e candidates identified as inverse beta-decay interactions followed by neutron capture on gadolinium. The analysis benefits from a doubling of the statistics of our previous result and from improvements of several important systematic uncertainties. No significant oscillation due to mixing of a sub-eV sterile neutrino with active neutrinos was found. Exclusion limits are set by both Feldman-Cousins and CLs methods. Light sterile neutrino mixing with sin 2⁡ 2⁢θ 14 ≳ 0.01 can be excluded at 95% confidence level in the region of 0.01 eV 2 ≲ |Δ⁢$m$$^{2}_{41}$| ≲ 0.1 eV 2 . This result represents the world-leading constraints in the region of 2 × 10 –4 eV 2 ≲ |Δ⁢$m$$^{2}_{41}$| ≲ 0.2 eV 2 .

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2020

Probing Nuclear Gluons with Heavy Flavor Production at EIC

The nuclear modifications of the parton densities in different regions of x (EMC effect, antishadowing, shadowing) reveal aspects of the fundamental QCD substructure of nucleon interactions in the nucleus. Here, we study the feasibility of measuring nuclear gluon densities at large x using open heavy flavor production (charm, beauty) in DIS at EIC. This in- cludes (a) charm production rates and kinematic dependences; (b) charm reconstruction at large x B using exclusive and inclusive modes, enabled by particle identification and vertex detection; (c) impact of inclusive charm data on nuclear gluon density.

EMC effect↗