Connected and Autonomous Vehicle Cohort Speed Control Optimization via Neuroevolution
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42 ENGINEERING↗
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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Changes in short- and medium-range order in metallic liquids during undercooling
It has been widely speculated that dominant motifs, such as short-range icosahedral order, can influence glass formation and the properties of glasses. Experimental data on both fragile and strong undercooled liquids demonstrate corresponding changes in their thermophysical properties consistent with increasing development of a network of interconnect motifs based on molecular dynamics. Describing these regions of local order, how they connect, and how they are related to property changes have been challenging issues, both computationally and experimentally. Yet the consensus is that metallic liquids develop interconnected medium-range order consisting of some regions with lower mobility with deeper undercooling. Less well understood is how these motifs (or “crystal genes”) in the liquid can inhibit nucleation in the deeply undercooled liquid or influence phase selection upon devitrification. These motifs tend to have local packing unlike stable compounds with icosahedral order tending to dominate the best glass formers. The underlying kinetic and thermodynamic forces that guide the formation of these motifs and how they interconnect during undercooling remain open questions.
36 MATERIALS SCIENCE↗
Multilevel Semantic Labeling of Mobile Homes from Overhead Imagery
Finding where people live and the vulnerabilities of man-made facilities during natural disasters, is not only critical for rescue efforts, but also essential for damage assessment in the aftermath. Leveraging on the availability of high resolution satellite imagery, advances in machine learning and high performance computing hardware, it is now possible to generate geographical maps for man-made facilities at scale. Mapping from satellite imagery can be a daunting task due to the enormous amount of data to be processed over large areas. In this short paper we take advantage of annotated satellite imagery and automate the semantic labeling of mobile home parks using an efficient framework rooted in patch-based and pixel-level classification. This multilevel labeling effort is a precursor to our future goal for deploying very large scale deep convolutional neural networks toward both broad and finer characterization of man-made structures from one-meter resolution NAIP images.
Lunga, Dalton↗
Modeling receptor flexibility in the structure-based design of KRAS G12C inhibitors
KRAS has long been referred to as an ‘undruggable’ target due to its high affinity for its cognate ligands (GDP and GTP) and its lack of readily exploited allosteric binding pockets. Recent progress in the development of covalent inhibitors of KRAS G12C has revealed that occupancy of an allosteric binding site located between the α3-helix and switch-II loop of KRAS G12C —sometimes referred to as the ‘switch-II pocket’—holds great potential in the design of direct inhibitors of KRAS G12C . In studying diverse switch-II pocket binders during the development of sotorasib (AMG 510), the first FDA-approved inhibitor of KRAS G12C , we found the dramatic conformational flexibility of the switch-II pocket posing significant challenges toward the structure-based design of inhibitors. Here, we present our computational approaches for dealing with receptor flexibility in the prediction of ligand binding pose and binding affinity. For binding pose prediction, we modified the covalent docking program CovDock to allow for protein conformational mobility. This new docking approach, termed as FlexCovDock, improves success rates from 55 to 89% for binding pose prediction on a dataset of 10 cross-docking cases and has been prospectively validated across diverse ligand chemotypes. For binding affinity prediction, we found standard free energy perturbation (FEP) methods could not adequately handle the significant conformational change of the switch-II loop. We developed a new computational strategy to accelerate conformational transitions through the use of targeted protein mutations. Using this methodology, the mean unsigned error (MUE) of binding affinity prediction were reduced from 1.44 to 0.89 kcal/mol on a set of 14 compounds. These approaches were of significant use in facilitating the structure-based design of KRAS G12C inhibitors and are anticipated to be of further use in the design of covalent (and noncovalent) inhibitors of other conformationally labile protein targets.
59 BASIC BIOLOGICAL SCIENCES↗
Non-dilute helium-related defect interactions in the near-surface region of plasma-exposed tungsten
We report a systematic energetic analysis of helium-related defect interactions that mediate helium (He) segregation on surfaces of plasma-exposed tungsten at different levels of He ion implantation. We focus on high He fluences that increase the He content in the plasma-exposed material well beyond the dilute limit of He concentration and employ atomic configurations generated by large-scale molecular dynamics simulations of He-implanted tungsten. We perform systematic molecular statics computations of cluster– defect interaction energetics in the highly defect-rich near-surface region of plasma-exposed tungsten for small mobile helium clusters as a function of the cluster distance from the surface. In this region, mobile clusters are also subjected to the stress fields generated by defects such as helium bubbles and other clusters, which govern cluster–defect interactions in addition to the cluster–surface interaction. Based on systematic investigation of individual cluster–defect interactions, we develop a mathematical framework to describe the interaction energy landscapes consisting of elastic interaction potential perturbations to finite-width square-well potentials, where the potential well accounts for cluster trapping by the defect at close range and subsequent coalescence and the perturbation potential is parameterized according to elastic inclusion theory. Superposition of all the relevant interaction potentials provides a comprehensive description of the interaction energy landscape that would be experienced by a small mobile cluster along its migration path toward the plasma-exposed surface at high He fluence. Such descriptions are particularly important for developing atomistically-informed, hierarchical multi-scale models of helium cluster dynamics in plasma-facing materials.
36 MATERIALS SCIENCE↗
NeoN: Neuromorphic Control for Autonomous Robotic Navigation
In this paper we describe the use of a new neuromorphic computing framework to implement the navigation system for a roaming, obstacle avoidance robot. Using a Dynamic Adaptive Neural Network Array (DANNA) structure, our TENNLab (Laboratory of Tennesseans Exploring Neural Networks) hardware/software co-design framework and evolutionary optimization (EO) as the training algorithm, we create, train, implement, and test a spiking neural network autonomous robot control system using an array of neuromorphic computing elements built on an FPGA. The simplicity and flexibility of the DANNA neuromorphic computing elements allow for sufficient scale and connectivity on a Xilinx Kintex-7 FPGA to support sensory input and motor control for a mobile robot to navigate a dynamically changing environment. We further describe how more complex capabilities can be added using the same platform, e.g. object identification and tracking.
Mitchell, J. Parker↗
Atomic-level mechanisms of short-circuit diffusion in materials
This paper reviews the recent progress in understanding the atomic mechanisms of short-circuit diffusion along materials interfaces, such as grain and interphase boundaries, as well as lattice and interfacial dislocations/disconnections. Recent atomistic computer simulations have shown that short-circuit diffusion is dominated by collective atomic rearrangements in the form of strings and rings of mobile atoms. The process is dynamically heterogeneous in space and time and has many features in common with atomic dynamics in supercooled glass-forming liquids. We discuss examples of grain boundary, interphase boundary, and dislocation diffusion in metals and alloys, including the solute effect on the diffusion rates and mechanisms. Interphase boundaries are exemplified by Al–Si interfaces with diverse orientation relationships and atomic structures. The hierarchy of short-circuit diffusion paths in materials is reviewed by comparing the rates of grain boundary, interphase boundary, and dislocation diffusion. Future directions in the field of short-circuit diffusion in defect core regions are discussed.
36 MATERIALS SCIENCE↗
Development of an Advanced Simulator to Model Mobility Control and Geomechanics during CO 2 Floods
The simulator is an isothermal, three-dimensional, four-phase, compositional, equation-of–state (EOS) simulator. We have named the simulator UTDOE-CO2 capable of simulating various recovery processes (i.e., primary, secondary waterflooding, and miscible and immiscible gas flooding). We include both the Peng-Robinson EOS and the Redlich-Kwong EOS models. A Gibbs stability test is also included in the model to perform a phase identification test to consistently label each phase for subsequent property calculations such as relative permeability, viscosity, density, interfacial tension, and capillary pressure. Our time step strategy is based on an IMPEC-type method (implicit pressure and explicit concentration). The gridblock pressure is solved first using the explicit dating of saturation-dependent terms. Subsequently, the material balance equations are solved explicitly for the total concentration of each component. The physical dispersion term is also included in the governing equations. The simulator includes (1) several foam model(s) for gas mobility control, (2) compositional relative permeability models with the hysteresis option, (3) corner point grid and several efficient solvers, (4) geomechanics module to compute stress field as the result of CO 2 injection/production, (5) the format of commercial visualization software, S3graf from Science-soft Ltd., was implemented for user friendly visualization of the simulation results. All tasks are completed and the simulator was fully tested and delivered to the DOE office including a user’s guide and several input files and the executable for Windows Pcs. We have published several SPE papers, presented several posters, and one MS thesis is completed (V. Pudugramam, 2013) resulting from this DOE funded project.
02 PETROLEUM↗
Effect of particle shape on stratification in drying films of binary colloidal mixtures
The role of particle shape in evaporation-induced auto-stratification in polydisperse colloidal suspensions is explored with molecular dynamics simulations of mixtures of spheres and aspherical particles. A unified framework based on the competition between diffusion and diffusiophoresis is proposed to understand the effects of shape and size dispersity. In general, particles diffusing more slowly (e.g., larger particles) tend to accumulate more strongly at the evaporation front. However, larger particles have larger surface areas and therefore greater diffusiophoretic mobility. Hence, they are more likely to be driven away from the evaporation front via diffusiophoresis. For a rapidly dried bidisperse suspension containing small and large spheres, the competition leads to “small-on-top” stratification. Here, we employ a computational model in which the diffusion coefficient is inversely proportional to particle mass. For a mixture of spheres and aspherical particles with similar mass, the diffusion contrast is reduced, and the spheres are always enriched at the evaporation front as they have the smallest surface area for a given mass and, therefore, the lowest diffusiophoretic mobility. Furthermore, for a mixture of solid and hollow spheres that have the same outer radius and thus the same surface area, the diffusiophoretic contrast is suppressed, and the system is dominated by diffusion. Consequently, the solid spheres, which have a larger mass and diffuse more slowly, accumulate on top of the hollow spheres. Finally, for a mixture of thin disks and long rods that differ significantly in shape but have similar mass and surface area, both diffusion and diffusiophoresis contrasts are suppressed, and the mixture does not stratify.
Classical molecular dynamic simulations↗
Mobile Pit verification system design based on passive special nuclear material verification in weapons storage facilities
A mobile 'drive by' passive radiation detection system to be applied in special nuclear materials (SNM) storage facilities for validation and compliance purposes has been designed through the use of computational modeling and new radiation detection methods. This project was the result of work over a 1 year period to create optimal design specifications to include creation of 3D models using both Monte Carlo and deterministic codes to characterize the gamma and neutron leakage out each surface of SNM-bearing canisters. Results were compared and agreement was demonstrated between both models. Container leakages were then used to determine the expected reaction rates using transport theory in the detectors when placed at varying distances from the can. A 'typical' background signature was incorporated to determine the minimum signatures versus the probability of detection to evaluate moving source protocols with collimation. This established the criteria for verification of source presence and time gating at a given vehicle speed. New methods for the passive detection of SNM were employed and shown to give reliable identification of age and material for highly enriched uranium (HEU) and weapons grade plutonium (WGPu). The finalized 'Mobile Pit Verification System' (MPVS) design demonstrated that a 'drive-by' detection system, collimated and operating at nominally 2 mph, is capable of rapidly verifying each and every weapon pit stored in regularly spaced, shelved storage containers, using completely passive gamma and neutron signatures for HEU and WGPu. This system is ready for real evaluation to demonstrate passive total material accountability in storage facilities. (authors)
97 MATHEMATICS AND COMPUTING↗
Malware forensics on mobile devices for DOE-EM applications - 15708
Malware attacks are deployed in order to achieve one of the following goals: To disrupt system functionality; To gather sensitive information; To gain access to private data. The top areas that become primary targets for malware to attack are: Availability, Integrity, Confidentiality. Malware forensics is a particular field where the execution and methods of a malware are studied. Malware activity has increased on unprotected mobile devices. Establishing an accurate and ethical approach is critical when assessing security issues. Knowing the method of execution leads to fewer security risks and prevention of future attacks. Our intentions are not to create a new wave of malware attacks, but to study them and point to possible vulnerabilities that can occur. To create a work-flow for desktop computers, the following benchmarks are used: Using an isolated environment, tracing the host processes, using dynamic analysis to isolate the malware and destroy it. The isolated environment will prevent any malignant code from activating and risking the rest of the computers in the vicinity and/or network. Tracing the host processes, will allow us to read the host and user processes, giving us valuable information on the activities of the device. Using dynamic analysis will allow us to manipulate the malware in a number of ways, such as using a debugger to try and change it. We used a virus and a Trojan to infiltrate a desktop computer for the following reasons: A - The virus will inject itself to force data to connect using a port. B - The Trojan will unlock and grant access to an unauthorized port. With the desktop work-flow in place as a systematic approach for mobile applications, we will investigate how to apply the same methods to the mobile devices. We are currently looking into different ways to develop 'friendly' malware to launch on the Android. We will then try to use malignant Windows malware to infect an Android, and using the work-flow try to come to the same conclusion as with the Android and Desktop, separately.
97 MATHEMATICS AND COMPUTING↗
Three-dimensional lattice Boltzmann simulations of microdroplets including contact angle hysteresis on topologically structured surfaces
In this study, the dynamical behavior of a droplet on topologically structured surface is investigated by using a three-dimensional color-gradient lattice Boltzmann model. A wetting boundary condition is proposed to model fluid-surface interactions, which is advantageous to improve the accuracy of the simulation and suppress spurious velocities at the contact line. The model is validated by the droplet partial wetting test and reproduction of the Cassie and Wenzel states. A series of simulations are conducted to investigate the behavior of a droplet when subjected to a shear flow. It is found that in Cassie state, the droplet undergoes a transition from stationary, to slipping and finally to detachment states as the capillary number increases, while in Wenzel state, the last state changes to the breakup state. The critical capillary number, above which the droplet slipping occurs, is small for the Cassie droplet, but is significantly enhanced for the Wenzel droplet due to the increased contact angle hysteresis. In Cassie state, the receding contact angle nearly equals the prediction by the Cassie relation, and the advancing contact angle is close to 180°, leading to a small contact angle hysteresis. In Wenzel state, however, the contact angle hysteresis is extremely large (around 100°). Finally, high droplet mobility can be easily achieved for Cassie droplets, whereas in Wenzel state, extremely low droplet mobility is identified.
97 MATHEMATICS AND COMPUTING↗
Improving Data Mobility & Management for International Cosmology
In February 2015 the third workshop in the CrossConnects series, with a focus on Improving Data Mobility & Management for International Cosmology, was held at Lawrence Berkeley National Laboratory. Scientists from fields including astrophysics, cosmology, and astronomy collaborated with experts in computing and networking to outline strategic opportunities for enhancing scientific productivity and effectively managing the ever-increasing scale of scientific data. While each field has unique details which depend on the instruments employed, the type and scale of the data, and the structure of scientific collaborations, several important themes emerged from the workshop discussions. Findings, as well as a set of recommendations, are contained in their respective sections in this report.
79 ASTRONOMY AND ASTROPHYSICS↗
Testing and Performance Validation of a Sensitive Gamma Ray Camera Designed for Radiation Detection and Decommissioning Measurements in Nuclear Facilities-13044
This paper describes the measurements, testing and performance validation of a sensitive gamma ray camera designed for radiation detection and quantification in the environment and decommissioning and hold-up measurements in nuclear facilities. The instrument, which is known as RadSearch, combines a sensitive and highly collimated LaBr{sub 3} scintillation detector with an optical (video) camera with controllable zoom and focus and a laser range finder in one detector head. The LaBr{sub 3} detector has a typical energy resolution of between 2.5% and 3% at the 662 keV energy of Cs-137 compared to that of NaI detectors with a resolution of typically 7% to 8% at the same energy. At this energy the tungsten shielding of the detector provides a shielding ratio of greater than 900:1 in the forward direction and 100:1 on the sides and from the rear. The detector head is mounted on a pan/tile mechanism with a range of motion of ±180 degrees (pan) and ±90 degrees (tilt) equivalent to 4 π steradians. The detector head with pan/tilt is normally mounted on a tripod or wheeled cart. It can also be mounted on vehicles or a mobile robot for access to high dose-rate areas and areas with high levels of contamination. Ethernet connects RadSearch to a ruggedized notebook computer from which it is operated and controlled. Power can be supplied either as 24-volts DC from a battery or as 50 volts DC supplied by a small mains (110 or 230 VAC) power supply unit that is co-located with the controlling notebook computer. In this latter case both power and Ethernet are supplied through a single cable that can be up to 80 metres in length. If a local battery supplies power, the unit can be controlled through wireless Ethernet. Both manual operation and automatic scanning of surfaces and objects is available through the software interface on the notebook computer. For each scan element making up a part of an overall scanned area, the unit measures a gamma ray spectrum. Multiple radionuclides may be selected by the operator and will be identified if present. In scanning operation the unit scans a designated region and superimposes over a video image the distribution of measured radioactivity. For the total scanned area or object RadSearch determines the total activity of operator selected radionuclides present and the gamma dose-rate measured at the detector head. Results of hold-up measurements made in a nuclear facility are presented, as are test measurements of point sources distributed arbitrarily on surfaces. These latter results are compared with the results of benchmarked MCNP Monte Carlo calculations. The use of the device for hold-up and decommissioning measurements is validated. (authors)
12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
Dynamics of CO in amorphous water-ice environments
The long-timescale behavior of adsorbed carbon monoxide on the surface of amorphous water ice is studied under dense cloud conditions by means of off-lattice, on-the-fly, kinetic Monte Carlo simulations. It is found that the CO mobility is strongly influenced by the morphology of the ice substrate. Nanopores on the surface provide strong binding sites, which can effectively immobilize the adsorbates at low coverage. As the coverage increases, these strong binding sites are gradually occupied leaving a number of admolecules with the ability to diffuse over the surface. Binding energies and the energy barrier for diffusion are extracted for various coverages. Additionally, the mobility of CO is determined from isothermal desorption experiments. Reasonable agreement on the diffusivity of CO is found with the simulations. Analysis of the 2152 cm{sup –1} polar CO band supports the computational findings that the pores in the water ice provide the strongest binding sites and dominate diffusion at low temperatures.
75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
BEAM CORE: A Flexible Ecosystem for Freight, Demographics, and Vehicle Analysis
The Behavior, Energy, Autonomy, and Mobility Comprehensive Regional Evaluator (BEAM CORE) is an open-source, modular ecosystem of highly refined, agent-based modeling tools developed by Lawrence Berkeley National Laboratory and the National Laboratory of the Rockies. Organizations such as metropolitan planning organizations, agencies, and companies can use BEAM CORE to analyze freight movement and optimize logistics solutions, assess the impacts of emerging freight technologies or e-commerce trends, model dynamic population growth and evolution, and understand the drivers and impacts of electric vehicle adoption across households in a given region. Users can choose from a flexible suite of modeling modules according to their needs and priorities. The modules integrate with travel demand models to support enhanced analysis of diverse scenarios involving freight movement, vehicle technologies, and other key factors relevant to regional planning.
33 ADVANCED PROPULSION SYSTEMS↗
Emulation of Synaptic Plasticity in WO 3 ‐Based Ion‐Gated Transistors
Neuromorphic systems, inspired by the human brain, promise significant advancements in computational efficiency and power consumption by integrating processing and memory functions, thereby addressing the von Neumann bottleneck. This paper explores the synaptic plasticity of a WO3-based ion-gated transistor (IGT) in [EMIM][TFSI] and a 0.1 mol L −1 LiTFSI in [EMIM][TFSI] for neuromorphic computing applications. Cyclic voltammetry (CV), transistor characteristics, and atomic force microscopy (AFM) force–distance (FD) profiling analyses reveal that Li + brings about ion intercalation, together with higher mobility and conductance, and slower response time (τ). WO 3 IGTs exhibit spike amplitude-dependent plasticity (SADP), spike number-dependent plasticity (SNDP), spike duration-dependent plasticity (SDDP), frequency-dependent plasticity (FDP), and paired-pulse facilitation (PPF), which are all crucial for mimicking biological synaptic functions and understanding how to achieve different types of plasticity in the same IGT. The findings underscore the importance of selecting the appropriate ionic medium to optimize the performance of synaptic transistors, enabling the development of neuromorphic systems capable of adaptive learning and real-time processing, which are essential for applications in artificial intelligence (AI).
36 MATERIALS SCIENCE↗
N-Protonated Isomers and Coulombic Barriers to Dissociation of Doubly Protonated Ala{sub 8}Arg
Collision-induced dissociation (or tandem mass spectrometry, MS/MS) of a protonated peptide results in a spectrum of fragment ions that is useful for inferring amino acid sequence. This is now commonplace and a foundation of proteomics. The underlying chemical and physical processes are believed to be those familiar from physical organic chemistry and chemical kinetics. However, first-principles predictions remain intractable because of the conflicting necessities for high accuracy (to achieve qualitatively correct kinetics) and computational speed (to compensate for the high cost of reliable calculations on such large molecules). To make progress, shortcuts are needed. Inspired by the popular mobile proton model, we have previously proposed a simplified theoretical model in which the gas-phase fragmentation pattern of protonated peptides reflects the relative stabilities of N-protonated isomers, thus avoiding the need for transition-state information. For singly protonated Ala{sub n} (n = 3–11), the resulting predictions were in qualitative agreement with the results from low-energy MS/MS experiments. Here, the comparison is extended to a model tryptic peptide, doubly protonated Ala{sub 8}Arg. This is of interest because doubly protonated tryptic peptides are the most important in proteomics. In comparison with experimental results, our model seriously overpredicts the degree of backbone fragmentation at N{sub 9}. We offer an improved model that corrects this deficiency. The principal change is to include Coulombic barriers, which hinder the separation of the product cations from each other. Coulombic barriers may be equally important in MS/MS of all multiply charged peptide ions. .
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗