Thick-Restart Lanczos with Explicit External Deflation for Computing Many Egenpairs and its Communication-Avoiding Variant.
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This presentation concludes the final design of TEX with chlorine absorbers is complete. 5 configurations were identified, expected to down select to three experimental configurations. Great comparison to Y-12 and good comparison to INL sensitivities. Fastest configuration touches on the 35 Cl(n,p) cross section (continuing to work with Terrapower for faster configurations). Extensive density studies performed to ensure understanding of the salt in the plates. Reactivity studies performed to assist with experiment. Finally, the fabrication of the chlorine absorbers is ongoing (with LANL), and the experiment is scheduled to be completed this year.
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Samples were collected from a population of 1,089 black cottonwood genotypes (P. trichocarpa) assembled from native stands to encompass the central portion of the natural range of the species, stretching from 38.8° to 54.3° N Q13 latitude from California, USA, to British Columbia, Canada. Establishment of the common garden, growth conditions, and site maintenance have been described by Muchero et al (2015). In this study, leaf samples for ionomic profiling were collected from 4-year-old trees, during the growing season, in July 2012, from a field located in Clatskanie, Oregon, USA (46°6′11″N 123°12′13″W). The field site was located in a protected alluvial floodplain containing a uniform Wauna-Locoda silt loam soil area characterized by an acidic pH, in Columbia County, Oregon. A subset of 584 out of the 1,089 P. trichocarpa genotypes were represented in this sampling. These genotypes were randomly selected to represent the geographical distribution of the population. A single fully mature (LPI 7-9) leaf on the south side of the tree exposed to full sunlight conditions was removed from the tree within a 6-hour window centering on solar noon and immediately frozen under dry ice before processing. Leaf samples of 584 P. trichocarpa genotypes were finely ground to 40 mm particle size using a mortar and pestle, and ionomic composition was analyzed using ICP-MS. In total, 20 elements were profiled, including aluminum (Al27), arsenic (As75), boron (B11), cadmium (Cd111), calcium (Ca43), cobalt (Co), copper (Cu), iron (Fe57), magnesium (Mg25), manganese (Mn55), molybdenum (Mo), nickel (Ni60), phosphorus (P31), potassium (K39), rubidium (Rb85), selenium (Se82), sodium (Na23), strontium (Sr88), sulfur (S34), and zinc (Zn66), following a protocol established by Ziegler et al. (2013). For each sample, 75mg of powder was digested overnight in 2.5 mL HNO3 containing 20 parts per billion (ppb) indium as an internal standard, following the protocol described in Ziegler et al. (2013). Following a dilution, concentration of the 20 elements was measured using an Elan 6000 DRC-e mass spectrometer (Perkin-Elmer SCIEX) connected to a PFA microflow nebulizer (Elemental Scientific) and Apex HF desolvator (Elemental Scientific). One measurement per sample per genotype was done. For subsequent analyses, the quantifications were converted to total element concentration.
The ionome represents elemental composition in plant tissues and can be an indicator of nutrient status as well as overall plant performance. Thus, identifying genetic determinants governing elemental uptake and storage is an important goal for breeding and engineering biomass feedstocks with improved performance. In this study, we coupled high-throughput ionome characterization of leaf tissues with high-resolution genome-wide association studies (GWAS) to uncover genetic loci that modulate ionomic composition in leaves of poplar ( Populus trichocarpa ). Significant agreement was observed across the three ionomic profiling platforms tested: inductively coupled plasma-mass spectrometry (ICP-MS), neutron activation analysis (NAA) and laser-induced breakdown spectroscopy (LIBS). Relative quantification of 20 elements using ICP-MS across a population of 584 genotypes, revealed larger variation in micro-nutrients and trace elements content than for macro-nutrients across genotypes. The GWAS performed using a set of high-density (>8.2 million) single nucleotide polymorphisms, identified over 600 loci significantly associated with variations in these mineral elements, pointing to numerous uncharacterized candidate genes. A significant enrichment for genes related to ion homeostasis and transport was observed, including several members of the cation-proton antiporters (CPA) family and MATE efflux transporters, previously reported to be critical for plant growth and fitness in other species. Our results also included a polymorphic copy of the high-affinity molybdenum transporter MOT1 found directly associated to molybdenum content. For the first time in a perennial plant, our results provide evidence of genetic control of mineral content in a model tree species.
Genome-wide association studies for non-syndromic orofacial clefting (OFC) have identified single nucleotide polymorphisms (SNPs) at loci where the presumed risk-relevant gene is expressed in oral periderm. The functional subsets of such SNPs are difficult to predict because the sequence underpinnings of periderm enhancers are unknown. We applied ATAC-seq to models of human palate periderm, including zebrafish periderm, mouse embryonic palate epithelia, and a human oral epithelium cell line, and to complementary mesenchymal cell types. We identified sets of enhancers specific to the epithelial cells and trained gapped-kmer support-vector-machine classifiers on these sets. We used the classifiers to predict the effects of 14 OFC-associated SNPs at 12q13 near KRT18. All the classifiers picked the same SNP as having the strongest effect, but the significance was highest with the classifier trained on zebrafish periderm. Reporter and deletion analyses support this SNP as lying within a periderm enhancer regulating KRT18/KRT8 expression.
An experimental investigation was conducted to determine the effects of several basic variables upon the damping of the fundamental antisymmetric mode of liquids in right-circular cylindrical tanks without baffles. The variables examined include liquid depth, efflux rate, liquid amplitude, kinematic viscosity, and tank size. The data are presented in dimensionless form and compared with available theory. For the range of variables examined, variations of efflux rate and liquid amplitude were found to have no significant effects on the liquid damping. The following theoretical relationship was found to be adequate for the prediction of the variation of damping with liquid depth, kinematic viscosity, and tank size: [for equation see full text] where v is the kinematic viscosity, R is the cylinder radius, g is the acceleration due to gravity, and h is the liquid depth. However, the constant K was experimentally found in this investigation to have the value 5.23, which is 50 percent higher than the theoretically predicted value.
Magnetic dipole field for retention and accumulation of hot plasma in magnetic trap program
Determination of maximum Chlorella photosynthesis
Digital simulation of tropospheric scatter communication channel
Asymptotic formulas for elastic cylindrical shells and analysis of Kirchhoff-Love theory
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The theoretical and mechanical structure of the computer program is presented along with guidance on adaptation of the code to solution of a particular problem. Sample solutions are discussed for several problems, especially with respect to solution accuracy and speed as a function of parameters under control of the user. Construction of input data decks for sample problems is discussed.
Earlier results suggested that Agromyces ramosus possibly might exist naturally in soil as a cell-wall-defective form. The purpose of the present study was to test this hypothesis by determining whether the laboratory-adapted strains of A. ramosus could be artificially induced into the L-phase and, if so, to examine some parameters affecting induction and the stability of the L-forms. The hypothesis was also tested by attempting to revert the laboratory L-phase strains by subjecting them to the technique originally used for isolation of the bacterial form from soil. It is shown that A. ramosus is easily induced into the L-phase by growing it on an agar media containing low levels of penicillin or glycine. The L-forms are found to be stable after initial contact with the inducing agent and to be unable to be reverted to the bacterial form. However, this lack of reversion does not completely negate the hypothesis that L-forms might occur in nature, because it is possible that L-forms existing in the natural state are less stable than those found in the laboratory where there is little selective pressure toward reversion.
Nested dissection orderings are known to be very effective for solving the sparse positive definite linear systems which arise from n by n grid problems. In this paper nested dissection is shown to be the final step of incomplete nested dissection, an ordering which corresponds to the premature termination of dissection. Analyses of the arithmetic and storage requirements for incomplete nested dissection are given, and the ordering is shown to be competitive with nested dissection under certain conditions.
Revised and extended versions of a fast, direct (noniterative) numerical Cauchy-Riemann solver are presented for solving finite difference approximations of first order systems of partial differential equations. Although the difference operators treated are linear and elliptic, one significant application of these extended direct Cauchy-Riemann solvers is in the fast, semidirect (iterative) solution of fluid dynamic problems governed by the nonlinear mixed elliptic-hyperbolic equations of transonic flow. Different versions of the algorithms are derived and the corresponding FORTRAN computer programs for a simple example problem are described and listed. The algorithms are demonstrated to be efficient and accurate.
Recent research indicates that the use of remote sensing techniques for the measurement of near surface soil moisture could be practical in the not too distant future. Other research shows that infiltration rates, especially for average or frequent rainfall events, are extremely sensitive to the proper definition and consideration of the role of the soil moisture at the beginning of the rainfall. Thus, it is important that an easy to use, but theoretically sound, rainfall infiltration model be available if the anticipated remotely sensed soil moisture data is to be optimally utilized for hydrologic simulation. A series of numerical experiments with the Richards' equation for an array of conditions anticipated in watershed hydrology were used to develop functional relationships that describe temporal infiltration rates as a function of soil type and initial moisture conditions.
Weldalite (trademark) 049 is an Al-Cu-Li-Ag-Mg alloy that is strengthened in artificially aged tempers primarily by very thin plate-like precipitates lying on the set of (111) matrix planes. This precipitate might be expected to be the T(sub 1) phase, Al2CuLi, which has been observed in Al-Cu-Li alloys. However, in several ways this precipitate is similar to the omega phase which also appears as the set of (111) planes plates and is found in Al-Cu-Ag-Mg alloys. The study was undertaken to identify the set of (111) planes precipitate or precipitates in Weldalite (trademark) 049 in the T8 (stretched and artificially aged) temper, and to determine whether T(sub 1), omega, or some other phase is primarily responsible for the high strength (i.e., 700 MPa tensile strength) in this Al-Cu-Li-Ag-Mg alloy.