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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 325 records · Page 18
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

An Extratropical Pathway for the Madden–Julian Oscillation’s Influence on North Atlantic Tropical Cyclones

Abstract This study investigates the combined impacts of the Madden–Julian oscillation (MJO) and extratropical anticyclonic Rossby wave breaking (AWB) on subseasonal Atlantic tropical cyclone (TC) activity and their physical connections. Our results show that during MJO phases 2–3 (enhanced Indian Ocean convection) and 6–7 (enhanced tropical Pacific convection), there are significant changes in basinwide TC activity. The MJO and AWB collaborate to suppress basinwide TC activity during phases 6–7 but not during phases 2–3. During phases 6–7, when AWB occurs, various TC metrics including hurricanes, accumulated cyclone energy, and rapid intensification probability decrease by ∼50%–80%. Simultaneously, large-scale environmental variables, like vertical wind shear, precipitable water, and sea surface temperatures become extremely unfavorable for TC formation and intensification, compared to periods characterized by suppressed AWB activity during the same MJO phases. Further investigation reveals that AWB events during phases 6–7 occur in concert with the development of a stronger anticyclone in the lower troposphere, which transports more dry, stable extratropical air equatorward, and drives enhanced tropical SST cooling. As a result, individual AWB events in phases 6–7 can disturb the development of surrounding TCs to a greater extent than their phases 2–3 counterparts. The influence of the MJO on AWB over the western subtropical Atlantic can be attributed to the modulation of the convectively forced Rossby wave source over the tropical eastern Pacific. A significant number of Rossby waves initiating from this region during phases 5–6 propagate into the subtropical North Atlantic, preceding the occurrence of AWB events in phases 6–7.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Implementation of a turbine farm model into the Energy Exascale Earth System Model for investigation and quantification of global climate impacts

Although there has been widespread deployment of wind farms in the United States, and plans to continue deployment into the future, the complete effects of wind farms on Earth systems are not well understood. The work performed here has incorporated wind farm models into the Energy Exascale Earth System Model (E3SM) capable of simulating the effects of extracting momentum from the atmospheric flow field using power generating wind farms. This new capability will allow scientists to quantify the impacts of wind farm induced changes on Earth systems by exploiting E3SM’s ability to couple atmospheric, oceanic, and biogeochemical (BGC) models on a global scale and monitor precipitation levels, extreme weather events, soil moisture content and jet stream location over decades-long time periods. This tool will be used to inform decision making on wind farm citing and will contribute to the Lab’s ability to assess energy technology impacts on the environment and evaluate the trade-offs between energy infrastructure investments and their impacts on natural systems.

17 WIND ENERGY↗
DOE OSTI2021

Seasonal changes in the drivers of water physico-chemistry variability of a small freshwater tidal river

Where rivers meet the sea, tides can exert a physical and chemical influence on the lower reaches of a river. How tidal dynamics in these tidal river reaches interact with upstream hydrological drivers such as storm rainfall, which ultimately determines the quantity and composition of material transferred from watersheds to estuaries, is currently unknown. We monitored a small freshwater tidal river in the Pacific Northwest, USA in high resolution over one year to evaluate the relative importance of tides versus upstream hydrological flows (i.e., base flow and precipitation events) on basic physico-chemical parameters (pH, dissolved oxygen, turbidity, specific conductivity, and temperature), and how these interactions relate to the downstream estuary. Tidal variability and diurnal cycles (i.e. solar radiation) dominated water physico-chemical variability in the summer, but the influence of these drivers was overshadowed by storm-driven sharp pulses in river physico-chemistry during the remainder of the year. Within such events, we found incidences of counterclockwise hysteresis of pH, counterclockwise hysteresis of dissolved oxygen, and clockwise hysteresis of turbidity, although systematic trends were not observed across events. The dominance of storm rainfall in the river’s physico-chemistry dynamics, and similar pulses of decreased pH observed in adjacent estuarine waters, suggest that the linkage between tidal streams and the broader system is variable throughout the year. High-frequency monitoring of tidal river biogeochemistry is therefore crucial to enable the assessment of how the relative strength of these drivers may change with future sea level rise and altered precipitation patterns to modulate biogeochemical dynamics across the land-ocean-atmosphere continuum.

aquatic↗
DOE OSTI2024

Bering Strait Ocean Heat Transport Drives Decadal Arctic Variability in a High‐Resolution Climate Model

Abstract We investigate the role of ocean heat transport (OHT) in driving the decadal variability of the Arctic climate by analyzing the pre‐industrial control simulation of a high‐resolution climate model. While the OHT variability at 65°N is greater in the Atlantic, we find that the decadal variability of Arctic‐wide surface temperature and sea ice area is much better correlated with Bering Strait OHT than Atlantic OHT. In particular, decadal Bering Strait OHT variability causes significant changes in local sea ice cover and air‐sea heat fluxes, which are amplified by shortwave feedbacks. These heat flux anomalies are regionally balanced by longwave radiation at the top of the atmosphere, without compensation by atmospheric heat transport (Bjerknes compensation). The sensitivity of the Arctic to changes in OHT may thus rely on an accurate representation of the heat transport through the Bering Strait, which is difficult to resolve in coarse‐resolution ocean models.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

Dust semi-direct effects: low-level cloud response to free-tropospheric dust-induced longwave radiation over the North Atlantic Ocean

Aerosol semi-direct effect is the adjustment of the radiative budget due to the cloud response to radiation absorption. Although dust accounts for about a third of aerosols' shortwave absorption, our understanding of its semi-direct effect often relies on traditional shortwave-focused mechanisms previously established for biomass-burning aerosols, and implications of dust longwave absorption on clouds have yet to be explored. Here, we assess the low-level cloud cover (LLCC) response to changes in properties and characteristics of the free-tropospheric dust layer over the North Atlantic Ocean (May–August, 2007–2017). We find that, consistent with previous studies, LLCC typically responds positively (increases in clouds) to an overlying dust layer. However, this response weakens with increasing dust optical depth (DOD), dust geometric thickness (DGT), and dust-layer base height (DBH). Specifically, we find that the LLCC response weakens by 4.3 ± 1.04 % and 1.6 ± 0.65 %, respectively, for a one-standard-deviation increase in DOD and DGT, and a smaller response to DBH (0.19 ± 0.45 %). We also find that the weakened LLCC response is primarily due to enhanced dust-induced longwave-dominated cloud-top warming, which counteracts the mean cloud-top cooling by as much as 19 % (mean of 9 %). Sensitivity analysis further indicates that the variability in dust properties, influenced by dust size distribution and refractive index, dominates the changes in dust-induced cloud-top warming, rather than variabilities in cloud properties or thermodynamic profiles. Our result adds to the traditional understanding of LLCC enhancement through shortwave-driven atmospheric stability, often associated with aerosol semi-direct effects, and highlights the role of dust-induced cloud-top longwave warming in dust semi-direct effects.

Pandey, Satyendra K. [Univ. of California, Merced,↗
DOE OSTI2023

Biodiversity and Stoichiometric Plasticity Increase Pico‐Phytoplankton Contributions to Marine Net Primary Productivity and the Biological Pump

Earth System Models generally predict increasing upper ocean stratification from 21st century warming, which will cause a decrease in the vertical nutrient flux forcing declines in marine net primary productivity (NPP) and carbon export. Recent advances in quantifying marine ecosystem carbon to nutrient stoichiometry have identified large latitudinal and biome variability, with low-latitude oligotrophic systems harboring pico-sized phytoplankton exhibiting large phosphorus to carbon cellular plasticity. The climate forced changes in nutrient flux stoichiometry and phytoplankton community composition are thus likely to alter the ocean's biogeochemical response and feedback with the carbon-climate system. We have added three pico-phytoplankton functional types within the Biogeochemical Elemental Cycling component of the Community Earth System Model while incorporating variable cellular phosphorus to carbon stoichiometry for all represented phytoplankton types. The model simulates Prochlorococcus and Synechococcus populations that dominate the productivity and sinking carbon export of the tropical and subtropical ocean, and pico-eukaryote populations that contribute significantly to productivity and export within the subtropical to mid-latitude transition zone, with the western subtropical regions of each basin supporting the most P-poor stoichiometries. Subtropical gyre recirculation regions along the poleward flanks of surface western boundary currents are identified as regional hotspots of enhanced carbon export exhibiting C-rich/P-poor stoichiometry, preferentially inhabited by pico-eukaryotes and diatoms. Collectively, pico-phytoplankton contribute ∼58% of global NPP and ∼46% of global particulate organic carbon export below 100 m through direct and ecosystem processing pathways. Biodiversity and cellular nutrient plasticity in marine pico-phytoplankton combine to increase their contributions to ocean productivity and the biological carbon pump.

Environmental Sciences & Ecology↗
DOE OSTI2023

A Machine Learning Correction Model of the Winter Clear-Sky Temperature Bias over the Arctic Sea Ice in Atmospheric Reanalyses

Atmospheric reanalyses are widely used to estimate the past atmospheric near-surface state over sea ice. They provide boundary conditions for sea ice and ocean numerical simulations and relevant information for studying polar variability and anthropogenic climate change. Previous research revealed the existence of large near-surface temperature biases (mostly warm) over the Arctic sea ice in the current generation of atmospheric reanalyses, which is linked to a poor representation of the snow over the sea ice and the stably stratified boundary layer in the forecast models used to produce the reanalyses. These errors can compromise the employment of reanalysis products in support of polar research. Here, we train a fully connected neural network that learns from remote sensing infrared temperature observations to correct the existing generation of uncoupled atmospheric reanalyses (ERA5, JRA-55) based on a set of sea ice and atmospheric predictors, which are themselves reanalysis products. The advantages of the proposed correction scheme over previous calibration attempts are the consideration of the synoptic weather and cloud state, compatibility of the predictors with the mechanism responsible for the bias, and a self-emerging seasonality and multidecadal trend consistent with the declining sea ice state in the Arctic. The correction leads on average to a 27% temperature bias reduction for ERA5 and 7% for JRA-55 if compared to independent in situ observations from the MOSAiC campaign (respectively, 32% and 10% under clear-sky conditions). These improvements can be beneficial for forced sea ice and ocean simulations, which rely on reanalyses surface fields as boundary conditions.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Iron dissolution from Patagonian dust in the Southern Ocean: under present and future conditions

Although the input of desert dust as a key source of trace metals in the Southern Ocean (SO) has been previously studied, the dissolution process of metals in surface waters, particularly iron (Fe), remain poorly understood. Given the crucial role of Fe in primary production and the biological carbon pump in the SO, we focused on experimental estimations of Fe dissolution from Patagonian dust, the primary natural dust source in the SO. Our study considered both current and projected future conditions, encompassing sea-surface warming, acidification, increased photosynthetically active radiation, and doubled dust inputs. Through controlled laboratory experiments using filtered SO seawater, conducted over 7 days, we assessed changes in particulate Fe (pFe) concentrations, Fe redox speciation (Fe(II)/Fe(III)), and in the mineralogy of Fe-bearing dust in abiotic condition. The predominant minerals in the dust included quartz and aluminosilicates, with silicon (Si), aluminum (Al), and Fe as the major elements. No significant alterations in the mineralogy and the elemental composition of the dust were recorded during the dissolution experiments, neither under present nor under projected future conditions. The particulate Fe(II)/Fe(III) ratio remained consistently at 0.25 during the experiments, unaffected by changed conditions. Consequently, changes in environmental conditions in the SO would therefore not significantly alter the mineralogy and redox speciation of pFe in the Patagonian dust. On the contrary, pFe exhibited a dissolution rate of 3.8% and 1.6% per day under present and future conditions, respectively. The environmental changes anticipated for 2100 in the SO will likely to result in a decrease in the dissolution rate of pFe. Thus, even though a doubling of dust input by 2100 is anticipated, it will unlikely provide significantly more dissolved Fe (dFe) in seawater in the SO. Consequently, the future intensification of Patagonian dust inputs may not alleviate the Fe limitation in the SO.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Enhanced interactions of Kuroshio Extension with tropical Pacific in a changing climate

Quasi-decadal climate of the Kuroshio Extension (KE) is pivotal to understanding the North Pacific coupled ocean–atmosphere dynamics and their predictability. Recent observational studies suggest that extratropical-tropical coupling between the KE and the central tropical Pacific El Niño Southern Oscillation (CP-ENSO) leads to the observed preferred decadal time-scale of Pacific climate variability. By combining reanalysis data with numerical simulations from a high-resolution climate model and a linear inverse model (LIM), we confirm that KE and CP-ENSO dynamics are linked through extratropical-tropical teleconnections. Specifically, the atmospheric response to the KE excites Meridional Modes that energize the CP-ENSO (extratropicstropics), and in turn, CP-ENSO teleconnections energize the extratropical atmospheric forcing of the KE (tropicsextratropics). However, both observations and the model show that the KE/CP-ENSO coupling is non-stationary and has intensified in recent decades after the mid-1980. Given the short length of the observational and climate model record, it is difficult to attribute this shift to anthropogenic forcing. However, using a large-ensemble of the LIM we show that the intensification in the KE/CP-ENSO coupling after the mid-1980 is significant and linked to changes in the KE atmospheric downstream response, which exhibit a stronger imprint on the subtropical winds that excite the Pacific Meridional modes and CP-ENSO.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Air‐Ice‐Ocean Coupling During a Strong Mid‐Winter Cyclone: Observing Coupled Dynamic Interactions Across Scales

Abstract Arctic cyclones are key drivers of sea ice and ocean variability. During the 2019–2020 Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition, joint observations of the coupled air‐ice‐ocean system were collected at multiple spatial scales. Here, we present observations of a strong mid‐winter cyclone that impacted the MOSAiC site as it drifted in the central Arctic pack ice. The sea ice dynamical response showed spatial structure at the scale of the evolving and translating cyclonic wind field. Internal ice stress and ocean stress play significant roles, resulting in timing offsets between the atmospheric forcing and the ice response and post‐cyclone inertial ringing in the ice and ocean. Ice motion in response to the wind field then forces the upper ocean currents through frictional drag. The strongest impacts to the sea ice and ocean from the passing cyclone occur as a result of the surface impacts of a strong atmospheric low‐level jet (LLJ) behind the trailing cold front and changing wind directions between the warm‐sector LLJ and post cold‐frontal LLJ. Impacts of the cyclone are prolonged through the coupled ice‐ocean inertial response. Local impacts of the approximately 120 km wide LLJ occur over a 12 hr period or less and at scales of a kilometer to a few tens of kilometers, meaning that these impacts occur at combined smaller spatial scales and faster time scales than most satellite observations and coupled Earth system models can resolve.

Meteorology & Atmospheric Sciences↗
DOE OSTI2020

Enhanced predictability of Eastern North Pacific Tropical cyclone activity using the ENSO Longitude Index

Past studies have indicated that El Nino-Southern Oscillation (ENSO) plays a major role in the interannual variability of Eastern Pacific hurricane activity. The primary mechanism being the eastward displacement of the warm pool during an El Nino, which carries warm water into that basin thereby creating favorable oceanic conditions. Despite this, the question of whether an accurate knowledge of ENSO enhances seasonal predictabiity of Eastern Pacific hurricanes has not been addressed specifically. In this study, we show that unlike traditional indices of ENSO, the ENSO Longitude Index (ELI) is able to predict Eastern Pacific hurricane activity at significant lead times. By capturing changes in the location of deep convection and associated thermocline processes more accurately, ELI explains the most variability in the upper-ocean heat content in the main development region of the Eastern Pacific basin compared to other ENSO indices. These results have substantial implications for operational seasonal forecasts of Eastern Pacific hurricanes.

Balaguru, Karthik↗
DOE OSTI2024

Reimagining Earth in the Earth System

Abstract Terrestrial, aquatic, and marine ecosystems regulate climate at local to global scales through exchanges of energy and matter with the atmosphere and assist with climate change mitigation through nature‐based climate solutions. Climate science is no longer a study of the physics of the atmosphere and oceans, but also the ecology of the biosphere. This is the promise of Earth system science: to transcend academic disciplines to enable study of the interacting physics, chemistry, and biology of the planet. However, long‐standing tension in protecting, restoring, and managing forest ecosystems to purposely improve climate evidences the difficulties of interdisciplinary science. For four centuries, forest management for climate betterment was argued, legislated, and ultimately dismissed, when nineteenth century atmospheric scientists narrowly defined climate science to the exclusion of ecology. Today's Earth system science, with its roots in global models of climate, unfolds in similar ways to the past. With Earth system models, geoscientists are again defining the ecology of the Earth system. Here we reframe Earth system science so that the biosphere and its ecology are equally integrated with the fluid Earth to enable Earth system prediction for planetary stewardship. Central to this is the need to overcome an intellectual heritage to the models that elevates geoscience and marginalizes ecology and local land knowledge. The call for kilometer‐scale atmospheric and ocean models, without concomitant scientific and computational investment in the land and biosphere, perpetuates the geophysical view of Earth and will not fully provide the comprehensive actionable information needed for a changing climate.

Meteorology & Atmospheric Sciences↗
DOE OSTI2023

Extreme windstorms in the Northeastern USA in the contemporary and future climate

Cold-season windstorms represent an important, and potentially changing, geophysical hazard in the Northeastern United States. Here we employ an integrated research methodology including both a storyline approach, where three intense windstorms from the current climate are subjected to pseudo-global warming (PGW) experiments, and a long-term transient simulation using the Weather Research and Forecasting (WRF) model. An ensemble of WRF simulations is built for each windstorm using different planetary boundary layer and microphysical parameterizations. The fidelity assessment suggests all ensemble members capture the windstorm evolution in contemporary climate. The configuration with highest fidelity is used in the PGW experiments performed with perturbed temperature fields, constant relative humidity, and deiced Great Lakes. These perturbation simulations indicate some evidence for a reduction of sea level pressure and increases in wind speed over and downwind of the Great Lakes and over the Atlantic Ocean plus an increase in precipitation accumulation but a reduction in snow coverage. These changes are spatially inhomogeneous in terms of magnitude and sign but are consistent with changes in potential vorticity. Alberta Clippers and Colorado Lows dominate the cyclones responsible for historical windstorms and thus are sampled in the PGW simulations. However, the transient simulation suggests an increasing role for tropical cyclones that undergo transition to extratropical cyclones. Furthermore, this reinforces the value of combining information from both PGW perturbation experiments within a storyline context and transient simulations when seeking to quantify the future risk associated with cold-season windstorms under changing climate.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Metabolic Profiling Reveals Biochemical Pathways Responsible for Eelgrass Response to Elevated CO2 and Temperature

Abstract As CO 2 levels in Earth’s atmosphere and oceans steadily rise, varying organismal responses may produce ecological losers and winners. Increased ocean CO 2 can enhance seagrass productivity and thermal tolerance, providing some compensation for climate warming. However, the metabolic shifts driving the positive response to elevated CO 2 by these important ecosystem engineers remain unknown. We analyzed whole-plant performance and metabolic profiles of two geographically distinct eelgrass ( Zostera marina L.) populations in response to CO 2 enrichment. In addition to enhancing overall plant size, growth and survival, CO 2 enrichment increased the abundance of Calvin Cycle and nitrogen assimilation metabolites while suppressing the abundance of stress-related metabolites. Overall metabolome differences between populations suggest that some eelgrass phenotypes may be better suited than others to cope with an increasingly hot and sour sea. Our results suggest that seagrass populations will respond variably, but overall positively, to increasing CO 2 concentrations, generating negative feedbacks to climate change.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Investigation of the genesis and intensification of simultaneous cyclones in the Arabian sea and Bay of Bengal in November 2020

The North Indian Ocean (NIO), which includes the Bay of Bengal (BoB) and the Arabian Sea (AS), is frequently impacted by tropical cyclones (TCs). Notably, in November 2020, the simultaneous occurrence of Cyclones Gati in the AS and Nivar in the BoB presented a rare and compelling phenomenon worthy of investigation. This study delves into the underlying mechanisms driving the genesis and intensification of these two Very Severe Cyclonic Storms (VSCS). Key contributing factors include elevated sea surface temperatures (SST) and Tropical Cyclone Heat Potential (TCHP), both crucial for the development and intensification of TCs. Notably, the BoB exhibits higher TCHP values compared to the AS, which facilitated greater intensity for Nivar over Gati. Despite their concurrent formation, the genesis processes of Gati and Nivar were distinct. The early November development of Gati in the AS was modulated by the Rossby wave and the Madden–Julian Oscillation (MJO). Subsequently, the eastward propagation of the MJO triggered the formation of Cyclone Nivar in the BoB, enhancing convective activity from the AS and coinciding with the arrival of a downward-propagating Rossby wave. This study provides a comprehensive analysis of the simultaneous formation of Gati and Nivar, contributing novel insights into the complex interactions between oceanic and atmospheric phenomena. In conclusion, such insights are vital for enhancing the predictive capabilities for destructive weather events in the NIO.

Climate Change↗
DOE OSTI2021

AMOC stability and diverging response to Arctic sea ice decline in two climate models

This study compares the impacts of Arctic sea ice decline on the Atlantic meridional overturning circulation (AMOC) in two configurations of the Community Earth System Model with different horizontal resolution. In a suite of model experiments, we impose radiative imbalance at the ice surface, replicating a loss of sea ice cover comparable to that observed during 1979–2014, and we find dramatic differences in the AMOC response between the two models. In the lower-resolution configuration, the AMOC weakens by about one-third over the first 100 years, approaching a new quasi-equilibrium. By contrast, in the higher-resolution configuration, the AMOC weakens by ~10% during the first 20–30 years followed by a full recovery driven by invigorated deep water formation in the Labrador Sea and adjacent regions. We investigate these differences using a diagnostic AMOC stability indicator, which reflects the AMOC freshwater transport in and out of the basin and hence the strength of the basin-scale salt-advection feedback. This indicator suggests that the AMOC in the lower-resolution model is less stable and more sensitive to surface perturbations, as confirmed by hosing experiments mimicking Arctic freshening due to sea ice decline. Differences between the models’ mean states, including the Atlantic Ocean mean surface freshwater fluxes, control the differences in AMOC stability. Our results demonstrate that the AMOC stability indicator is indeed useful for evaluating AMOC sensitivity to perturbations. We emphasize that, despite the differences in the long-term adjustment, both models simulate a multidecadal AMOC weakening caused by Arctic sea ice decline, relevant to climate change.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

A spatial evaluation of Arctic sea ice and regional limitations in CMIP6 historical simulations

The Arctic sea ice response to a warming climate is assessed in a subset of models participating in Phase 6 of the Coupled Model Intercomparison Project (CMIP6), using several metrics in comparison with satellite observations and results from the Pan-Arctic Ice Ocean Modeling and Assimilation System and the Regional Arctic System Model. Our study examines the historical representation of sea ice extent, volume, and thickness using spatial analysis metrics, such as the integrated ice-edge error, Brier score, and Spatial Probability Score. We find that the CMIP6 multi-model mean captures the mean annual cycle and 1979-2014 sea ice trends remarkably well. However, individual models experience a wide range of uncertainty in the spatial distribution of sea ice when compared against satellite measurements and reanalysis data. Our metrics expose common and individual regional model biases, which sea ice temporal analyses alone do not capture. We identify large ice edge and ice thickness errors in Arctic sub-regions, implying possible model specific limitations in or lack of representation of some key physical processes. We postulate that many of them could be related to the oceanic forcing, especially in the marginal and shelf seas, where seasonal sea ice changes are not adequately simulated. We therefore conclude that an individual model’s ability to represent the observed/reanalysis spatial distribution still remains a challenge. We propose the spatial analysis metrics as useful tools to diagnose model limitations, narrow down possible processes affecting them, and guide future model improvements critical to the representation and projections of Arctic climate change.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

Abstract Background Over their evolutionary history, corals have adapted to sea level rise and increasing ocean temperatures, however, it is unclear how quickly they may respond to rapid change. Genome structure and genetic diversity contained within may highlight their adaptive potential. Results We present chromosome-scale genome assemblies and linkage maps of the critically endangered Atlantic acroporids,Acropora palmataandA. cervicornis. Both assemblies and linkage maps were resolved into 14 chromosomes with their gene content and colinearity. Repeats and chromosome arrangements were largely preserved between the species. The family Acroporidae and the genusAcroporaexhibited many phylogenetically significant gene family expansions. Macrosynteny decreased with phylogenetic distance. Nevertheless, scleractinians shared six of the 21 cnidarian ancestral linkage groups as well as numerous fission and fusion events compared to other distantly related cnidarians. Genetic linkage maps were constructed from oneA. palmatafamily and 16A. cervicornisfamilies using a genotyping array. The consensus maps span 1,013.42 cM and 927.36 cM forA. palmataandA. cervicornis, respectively. Both species exhibited high genome-wide recombination rates (3.04 to 3.53 cM/Mb) and pronounced sex-based differences, known as heterochiasmy, with 2 to 2.5X higher recombination rates estimated in the female maps. Conclusions Together, the chromosome-scale assemblies and genetic maps we present here are the first detailed look at the genomic landscapes of the critically endangered Atlantic acroporids. These data sets revealed that adaptive capacity of Atlantic acroporids is not limited by their recombination rates. The sister species maintain macrosynteny with few genes with high sequence divergence that may act as reproductive barriers between them. In the AtlanticAcropora, hybridization between the two sister species yields an F1 hybrid with limited fertility despite the high levels of macrosynteny and gene colinearity of their genomes. Together, these resources now enable genome-wide association studies and discovery of quantitative trait loci, two tools that can aid in the conservation of these species.

Biotechnology & Applied Microbiology↗