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Earth System Grid Federation: Federated and Integrated Climate Data from Multiple Sources. IN: Earth System Modeling, Volume 6

In climate science, the quantity of data in use by 2020 is expected to be in the hundreds of exabytes (EB, where 1 exabyte = 1018 bytes). Current and future heterogeneous climate data will be distributed around the globe and must be harnessed to find solutions to mission-critical problems. Additionally, more requirements and more constraints are needed to expand and integrate new modeling capabilities and tasks, such as climate prediction, uncertainty quantification (UQ) of model performance, test-bed development, and assimilation of more diverse data sets. These data exploration tasks can be complex and time-consuming, and frequently involve numerous resources spread throughout the modeling and observational climate communities. Staff expertise and core competencies must therefore be flexibly applied to multiple projects and programs to accommodate more complex applications and state-of-the-art science analysis, while allowing resources to be adapted to address future areas of interest in climate research.

Climate Project↗

Electroexcitation of the Δ + (1232) at low momentum transfer

We report on new p$(e,e^\prime p)\pi^\circ$ measurements at the $\Delta^{+}(1232)$ resonance at the low momentum transfer region. The mesonic cloud dynamics is predicted to be dominant and rapidly changing in this kinematic region offering a test bed for chiral effective field theory calculations. The new data explore the low $Q^2$ dependence of the resonant quadrupole amplitudes while extending the measurements of the Coulomb quadrupole amplitude to the lowest momentum transfer ever reached. The results disagree with predictions of constituent quark models and are in reasonable agreement with dynamical calculations that include pion cloud effects, chiral effective field theory and lattice calculations. The reported measurements suggest that improvement is required to the theoretical calculations and provide valuable input that will allow their refinements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Reimagining the potential of Earth observations for ecosystem service assessments

The benefits nature provides to people, called ecosystem services, are increasingly recognized and accounted for in assessments of infrastructure development, agricultural management, conservation prioritization, and sustainable sourcing. These assessments are often limited by data, however, a gap with tremendous potential to be filled through Earth observations (EO), which produce a variety of data across spatial and temporal extents and resolutions. Despite widespread recognition of this potential, in practice few ecosystem service studies use EO. Here, we identify challenges and opportunities to using EO in ecosystem service modeling and assessment. Some challenges are technical, related to data awareness, processing, and access. These challenges require systematic investment in model platforms and data management. Other challenges are more conceptual but still systemic; they are byproducts of the structure of existing ecosystem service models and addressing them requires scientific investment in solutions and tools applicable to a wide range of models and approaches. We also highlight new ways in which EO can be leveraged for ecosystem service assessments, identifying promising new areas of research. More widespread use of EO for ecosystem service assessment will only be achieved if all of these types of challenges are addressed. Furthermore, this will require non-traditional funding and partnering opportunities from private and public agencies to promote data exploration, sharing, and archiving. Investing in this integration will be reflected in better and more accurate ecosystem service assessments worldwide.

54 ENVIRONMENTAL SCIENCES↗

MODE: A Web Application for Interactive Visualization and Exploration of Omics Data

Studies generating transcriptomics, proteomics, lipidomics, and metabolomics (colloquially referred to as “omics”) data allow researchers to find biomarkers or molecular targets, or understand complex biological structures and functions by identifying changes in biomolecule abundance and expression between experimental conditions. Omics data is multi-dimensional and oftentimes summarization techniques such as principal component analysis (PCA) are used to identify high-level patterns in data. Though useful, these summaries don’t allow exploration of detailed patterns in omics data that may have biological relevance. The use of interactive HTML displays with plots allows researchers to interact with omics data at a detailed level, but building these displays requires significant coding expertise. To overcome this barrier, the software MODE was built to empower users to build their own interactive HTML displays to support scientific discovery. These displays are easily shareable, do not depend on a specific operating system, and allow users to effortlessly sort and filter plots by categorical or numerical variables. MODE allows users to build and share these displays with several options for plot design and meta selection. In conclusion, the MODE web application and its capabilities are presented and then demonstrated on lipidomics data from a leaf wounding study.

lipidomics↗

A Moist Physics Parameterization Based on Deep Learning

Abstract Current moist physics parameterization schemes in general circulation models (GCMs) are the main source of biases in simulated precipitation and atmospheric circulation. Recent advances in machine learning make it possible to explore data‐driven approaches to developing parameterization for moist physics processes such as convection and clouds. This study aims to develop a new moist physics parameterization scheme based on deep learning. We use a residual convolutional neural network (ResNet) for this purpose. It is trained with 1‐year simulation from a superparameterized GCM, SPCAM. An independent year of SPCAM simulation is used for evaluation. In the design of the neural network, referred to as ResCu, the moist static energy conservation during moist processes is considered. In addition, the past history of the atmospheric states, convection, and clouds is also considered. The predicted variables from the neural network are GCM grid‐scale heating and drying rates by convection and clouds, and cloud liquid and ice water contents. Precipitation is derived from predicted moisture tendency. In the independent data test, ResCu can accurately reproduce the SPCAM simulation in both time mean and temporal variance. Comparison with other neural networks demonstrates the superior performance of ResNet architecture. ResCu is further tested in a single‐column model for both continental midlatitude warm season convection and tropical monsoonal convection. In both cases, it simulates the timing and intensity of convective events well. In the prognostic test of tropical convection case, the simulated temperature and moisture biases with ResCu are smaller than those using conventional convection and cloud parameterizations.

54 ENVIRONMENTAL SCIENCES↗

SURVEY SIMULATIONS OF A NEW NEAR-EARTH ASTEROID DETECTION SYSTEM

We have carried out simulations to predict the performance of a new space-based telescopic survey operating at thermal infrared wavelengths that seeks to discover and characterize a large fraction of the potentially hazardous near-Earth asteroid (NEA) population. Two potential architectures for the survey were considered: one located at the Earth–Sun L1 Lagrange point, and one in a Venus-trailing orbit. A sample cadence was formulated and tested, allowing for the self-follow-up necessary for objects discovered in the daytime sky on Earth. Synthetic populations of NEAs with sizes as small as 140 m in effective spherical diameter were simulated using recent determinations of their physical and orbital properties. Estimates of the instrumental sensitivity, integration times, and slew speeds were included for both architectures assuming the properties of newly developed large-format 10 μm HgCdTe detector arrays capable of operating at ∼35 K. Our simulation included the creation of a preliminary version of a moving object processing pipeline suitable for operating on the trial cadence. We tested this pipeline on a simulated sky populated with astrophysical sources such as stars and galaxies extrapolated from Spitzer Space Telescope and Wide-field Infrared Explorer data, the catalog of known minor planets (including Main Belt asteroids, comets, Jovian Trojans, planets, etc.), and the synthetic NEA model. Trial orbits were computed for simulated position-time pairs extracted from the synthetic surveys to verify that the tested cadence would result in orbits suitable for recovering objects at a later time. Our results indicate that the Earth–Sun L1 and Venus-trailing surveys achieve similar levels of integral completeness for potentially hazardous asteroids larger than 140 m; placing the telescope in an interior orbit does not yield an improvement in discovery rates. This work serves as a necessary first step for the detailed planning of a next-generation NEA survey.

79 ASTRONOMY AND ASTROPHYSICS↗

THE UNIVERSAL INITIAL MASS FUNCTION IN THE EXTENDED ULTRAVIOLET DISK OF M83

We report deep Subaru H{alpha} observations of the extended ultraviolet (XUV) disk of M83. These new observations enable the first complete census of very young stellar clusters over the entire XUV disk. Combining Subaru and Galaxy Evolution Explorer data with a stellar population synthesis model, we find that (1) the standard, but stochastically sampled, initial mass function (IMF) is preferred over the truncated IMF because there are low-mass stellar clusters (10{sup 2-3} M{sub Sun }) that host massive O-type stars; (2) the standard Salpeter IMF and a simple aging effect explain the counts of far-UV (FUV)-bright and H{alpha}-bright clusters with masses >10{sup 3} M{sub Sun }; and (3) the H{alpha}-to-FUV flux ratio over the XUV disk supports the standard IMF. To reach conclusion (2), we assumed instantaneous cluster formation and a constant cluster formation rate over the XUV disk. The Subaru Prime Focus Camera covers a large area even outside the XUV disk-far beyond the detection limit of the H I gas. This enables us to statistically separate the stellar clusters in the disk from background contamination. The new data, model, and previous spectroscopic studies provide overall consistent results with respect to the internal dust extinction (A{sub V} {approx} 0.1 mag) and low metallicity ({approx}0.2 Z{sub Sun }) using the dust extinction curve of the Small Magellanic Cloud. The minimum cluster mass for avoiding the upper IMF incompleteness due to stochastic sampling and the spectral energy distributions of O, B, and A stars are discussed in the Appendices.

79 ASTRONOMY AND ASTROPHYSICS↗

AN Fe XXIV ABSORPTION LINE IN THE PERSISTENT SPECTRUM OF THE DIPPING LOW-MASS X-RAY BINARY 1A 1744-361

We report on Chandra X-ray Observatory (Chandra) High Energy Transmission Grating spectra of the dipping low-mass X-ray binary 1A 1744-361 during its 2008 July outburst. We find that its persistent emission is well modeled by a blackbody (kT {approx} 1.0 keV) plus power law ({Gamma} {approx} 1.7) with an absorption edge. In the residuals of the combined spectrum, we find a significant absorption line at 6.961 {+-} 0.002 keV, consistent with the Fe XXVI (hydrogen-like Fe) 2-1 transition. We place an upper limit on the velocity of a redshifted flow of v < 221 km s{sup -1}. We find an equivalent width for the line of 27{sup +2}{sub -3} eV, from which we determine a column density of (7 {+-} 1) Multiplication-Sign 10{sup 17} cm{sup -2} via a curve-of-growth analysis. Using XSTAR simulations, we place a lower limit on the ionization parameter of >10{sup 3.6} erg cm s{sup -1}. We discuss what implications the feature has on the system and its geometry. We also present Rossi X-ray Timing Explorer data accumulated during this latest outburst and, via an updated color-color diagram, clearly show that 1A 1744-361 is an 'atoll' source.

79 ASTRONOMY AND ASTROPHYSICS↗

ULTRAVIOLET OBSERVATIONS OF THE GLOBULAR CLUSTER M10 FROM HST AND GALEX: THE BSS POPULATION

We present a combination of high-resolution Hubble Space Telescope and wide-field ground-based and Galaxy Evolution Explorer data of the Galactic globular cluster M10 (NGC 6254). By using this large data set, we determined the center of gravity of the cluster and we built its density profile from star counts over its entire radial extension. We find that the density profile is well reproduced by a single-mass King model with structural parameters c = 1.41 and r{sub c} = 41''. We also studied the blue straggler star (BSS) population and its radial distribution. We count a total number of 120 BSS within the tidal radius. Their radial distribution is bimodal: highly peaked in the cluster center, decreasing at intermediate distances, and rising again outward. We discuss these results in the context of the dynamical clock scheme presented by Ferraro et al. and of recent results about the radial distribution of binary systems in this cluster.

79 ASTRONOMY AND ASTROPHYSICS↗

Dust scattering and the radiation pressure force in the M82 superwind

Radiation pressure on dust grains may be an important physical mechanism driving galaxy-wide superwinds in rapidly star-forming galaxies. We calculate the combined dust and gas Eddington ratio (Γ) for the archetypal superwind of M82. By combining archival Galaxy Evolution Explorer data, a standard dust model, Monte Carlo dust scattering calculations, and the Herschel map of the dust surface density distribution, the observed far-UV/near-UV surface brightness in the outflow constrains both the total UV luminosity escaping from the starburst along its minor axis (L {sub *,UV}) and the flux-mean opacity, thus allowing a calculation of Γ. We find that L {sub *,UV} ≈ (1-6) × 10{sup 42} erg s{sup –1}, ∼2-12 times greater than the UV luminosity observed from our line of sight. On a scale of 1-3 kpc above the plane of M82, we find that Γ ∼ 0.01-0.06. On smaller scales (∼0.25-0.5 kpc), where the enclosed mass decreases, our calculation of L {sub *,UV} implies that Γ ∼ 0.1 with factor of few uncertainties. Within the starburst itself, we estimate the single-scattering Eddington ratio to be of order unity. Thus, although radiation pressure is weak compared to gravity on kpc scales above the plane of M82, it may yet be important in launching the observed outflow. We discuss the primary uncertainties in our calculation, the sensitivity of Γ to the dust grain size distribution, and the time evolution of the wind following M82's recent starburst episodes.

79 ASTRONOMY AND ASTROPHYSICS↗

The diffuse galactic far-ultraviolet sky

We present an all-sky map of the diffuse Galactic far ultraviolet (1344-1786 Å) background using Galaxy Evolution Explorer data, covering 65% of the sky with 11.79 arcmin{sup 2} pixels. We investigate the dependence of the background on Galactic coordinates, finding that a standard cosecant model of intensity is not a valid fit. Furthermore, we compare our map to Galactic all-sky maps of 100 μm emission, N {sub H} {sub I} column, and Hα intensity. We measure a consistent low level far-UV (FUV) intensity at zero points for other Galactic quantities, indicating a 300 photons cm{sup –2} s{sup –1} sr{sup –1} Å{sup –1} non-scattered isotropic component to the diffuse FUV. There is also a linear relationship between FUV and 100 μm emission below 100 μm values of 8 MJy sr{sup –1}. We find a similar linear relationship between FUV and N {sub H} {sub I} below 10{sup 21} cm{sup –2}. The relationship between FUV and Hα intensity has no such constant cutoff. For all Galactic quantities, the slope of the linear portion of the relationship decreases with Galactic latitude. A modified cosecant model, taking into account dust scattering asymmetry and albedo, is able to accurately fit the diffuse FUV at latitudes above 20°. The best fit model indicates an albedo, a, of 0.62 ± 0.04 and a scattering asymmetry function, g, of 0.78 ± 0.05. Deviations from the model fit may indicate regions of excess FUV emission from fluorescence or shock fronts, while low latitude regions with depressed FUV emission are likely the result of self-shielding dusty clouds.

79 ASTRONOMY AND ASTROPHYSICS↗

Particle acceleration at quasi-perpendicular shock waves: Theory and observations at 1 AU

The injection of particles into the diffusive shock acceleration mechanism at highly perpendicular (where θ {sub Bn} > 70°) interplanetary shocks is investigated. This extends the previous study of Neergaard Parker and Zank which focused on the injection problem at quasi-parallel interplanetary shocks. We use observations at 1 AU to construct upstream Maxwellian and κ-distributions that are then diffusively accelerated by the shock, thus yielding the downstream accelerated particle distribution. We compare the theoretical accelerated particle distribution to observations at 1 AU using Advanced Composition Explorer data. We classify our results for quasi-perpendicular shocks into three subcategories: those with ratios of the theoretical spectral index to observed power law of >1, ∼ 1, and <1, and compare the magnetic power spectral density plots of these categories. We find that in general the assumed upstream particle distribution that best fits the energetic particle observations is best represented by a κ-distribution, with κ = 4. The magnetic field fluctuations were representative of quasi-perpendicular shocks and showed no particular bias toward our spectral ratio subcategories. The subcategory with spectral ratio <0.9 yielded the largest injection energies for all groups. In all but two of the cases in this study, there were enough particles in the solar wind thermal core to account for the accelerated distribution, thereby giving a lower limit to the required injection energy needed to diffusively accelerate particles at a quasi-perpendicular interplanetary shock. In the remaining two cases, an additional population of particles was required to match the appropriate amplitude of the spectral index. For these cases, we used a low energy (1-50 keV) v {sup –5} spectrum advocated by Fisk and Gloeckler.

79 ASTRONOMY AND ASTROPHYSICS↗

GALAXY EVOLUTION IN THE MID-INFRARED GREEN VALLEY: A CASE OF THE A2199 SUPERCLUSTER

We study the mid-infrared (MIR) properties of the galaxies in the A2199 supercluster at z = 0.03 to understand the star formation activity of galaxy groups and clusters in the supercluster environment. Using the Wide-field Infrared Survey Explorer data, we find no dependence of mass-normalized integrated star formation rates of galaxy groups/clusters on their virial masses. We classify the supercluster galaxies into three classes in the MIR color-luminosity diagram: MIR blue cloud (massive, quiescent, and mostly early-type), MIR star-forming sequence (mostly late-type), and MIR green valley galaxies. These MIR green valley galaxies are distinguishable from the optical green valley galaxies in the sense that they belong to the optical red sequence. We find that the fraction of each MIR class does not depend on the virial mass of each group/cluster. We compare the cumulative distributions of surface galaxy number density and cluster/group-centric distance for the three MIR classes. MIR green valley galaxies show the distribution between MIR blue cloud and MIR star-forming (SF) sequence galaxies. However, if we fix galaxy morphology, early- and late-type MIR green valley galaxies show different distributions. Our results suggest a possible evolutionary scenario of these galaxies: (1) late-type MIR SF sequence galaxies → (2) late-type MIR green valley galaxies → (3) early-type MIR green valley galaxies → (4) early-type MIR blue cloud galaxies. In this sequence, the star formation of galaxies is quenched before the galaxies enter the MIR green valley, and then morphological transformation occurs in the MIR green valley.

79 ASTRONOMY AND ASTROPHYSICS↗

Controlled neoclassical tearing mode (NTM) healing by fueling pellets and its impact on electron cyclotron current drive requirements for complete NTM stabilization

Controlled partial stabilization of core m/n – 2/1 Neoclassical Tearing Modes (NTMs) by fueling deuterium pellets is reported in DIII-D and KSTAR H-mode plasmas (m=n are the poloidal/toroidal mode numbers). Analyses of DIII-D data exploring possible physics origins show that an explanation is offered by NTM-turbulence multi-scale interaction, triggered by a sudden increase of local gradients near q–2 caused by the pellet. Pellet injection from the high-field side allows deep fueling which reaches the island region. In turn, low-k turbulent density fluctuations (&ntilde;) increase by 30% in the island region. This &ntilde; can drive transport across the island separatrices, reducing the pressure at spot at the O-point and diminishing the NTM drive. The Mirnov probe array detects the reduction of the 2/1 magnetic amplitude by up to 20%. Causality between elevated gradients outside of the island, turbulence spreading into the island and reduced NTM drive is qualitatively supported by non-linear gyrokinetic turbulence simulations. These demonstrate increased penetration of ion-scale &ntilde; from the background plasma to the O-point region when the background gradient is increased. This interaction has potentially far reaching consequences as it can can lead to a reduction of the required electron cyclotron current density (j ECCD ) for NTM suppression by 70%, as predicted by the modified Rutherford equation. Furthermore, this beneicial effect of fueling pellets can be important as j ECCD is the anticipated active NTM control technique for the International Thermonuclear Experimental Reactor (ITER), but its efficiency will be lowered by third harmonic absorption in Pre-Fusion Power Operation-1 (PFPO-1) at half magnetic field.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DISCOVERY OF HIGH-FREQUENCY QUASI-PERIODIC OSCILLATIONS IN THE BLACK HOLE CANDIDATE IGR J17091-3624

We report the discovery of 8.5{sigma} high-frequency quasi-periodic oscillations (HFQPOs) at 66 Hz in the Rossi X-ray Timing Explorer data of the black hole candidate IGR J17091-3624, a system whose X-ray properties are very similar to those of microquasar GRS 1915+105. The centroid frequency of the strongest peak is {approx}66 Hz, its quality factor above five, and its rms is between 4% and 10%. We found a possible additional peak at 164 Hz when selecting a subset of the data; however, at the 4.5{sigma} level we consider this detection marginal. These QPOs have hard spectrum and are stronger in observations performed between 2011 September and October, during which IGR J17091-3624 displayed for the first time light curves that resemble those of the {gamma} variability class in GRS 1915+105. We find that the 66 Hz QPO is also present in previous observations (4.5{sigma}), but only when averaging {approx}235 ks of relatively high count rate data. The fact that the HFQPOs frequency in IGR J17091-3624 matches surprisingly well with that seen in GRS 1915+105 raises questions on the mass scaling of QPOs frequency in these two systems. We discuss some possible interpretations; however, they all strongly depend on the distance and mass of IGR J17091-3624, both completely unconstrained today.

79 ASTRONOMY AND ASTROPHYSICS↗

Diazotroph Community Characterization via a High-Throughput nifH Amplicon Sequencing and Analysis Pipeline

The dinitrogenase reductase gene ( nifH ) is the most widely established molecular marker for the study of nitrogen-fixing prokaryotes in nature. A large number of PCR primer sets have been developed for nifH amplification, and the effective deployment of these approaches should be guided by a rapid, easy-to-use analysis protocol. Bioinformatic analysis of marker gene sequences also requires considerable expertise. In this study, we advance the state of the art for nifH analysis by evaluating nifH primer set performance, developing an improved amplicon sequencing workflow, and implementing a user-friendly bioinformatics pipeline. Furthermore, the developed amplicon sequencing workflow is a three-stage PCR-based approach that uses established technologies for incorporating sample-specific barcode sequences and sequencing adapters. Based on our primer evaluation, we recommend the Ando primer set be used with a modified annealing temperature of 58°C, as this approach captured the largest diversity of nifH templates, including paralog cluster IV/V sequences. To improve nifH sequence analysis, we developed a computational pipeline which infers taxonomy and optionally filters out paralog sequences. In addition, we employed an empirical model to derive optimal operational taxonomic unit (OTU) cutoffs for the nifH gene at the species, genus, and family levels. A comprehensive workflow script named TaxADivA (TAXonomy Assignment and DIVersity Assessment) is provided to ease processing and analysis of nifH amplicons. Our approach is then validated through characterization of diazotroph communities across environmental gradients in beach sands impacted by the Deepwater Horizon oil spill in the Gulf of Mexico, in a peat moss-dominated wetland, and in various plant compartments of a sugarcane field. IMPORTANCE: Nitrogen availability often limits ecosystem productivity, and nitrogen fixation, exclusive to prokaryotes, comprises a major source of nitrogen input that sustains food webs. The nifH gene, which codes for the iron protein of the nitrogenase enzyme, is the most widely established molecular marker for the study of nitrogen-fixing microorganisms (diazotrophs) in nature. In this study, a flexible sequencing/analysis pipeline, named TaxADivA, was developed for nifH amplicons produced by Illumina paired-end sequencing, and it enables an inference of taxonomy, performs clustering, and produces output in formats that may be used by programs that facilitate data exploration and analysis. Diazotroph diversity and community composition are linked to ecosystem functioning, and our results advance the phylogenetic characterization of diazotroph communities by providing empirically derived nifH similarity cutoffs for species, genus, and family levels. Thus, the utility of our pipeline is validated for diazotroph communities in a variety of ecosystems, including contaminated beach sands, peatland ecosystems, living plant tissues, and rhizosphere soil.

59 BASIC BIOLOGICAL SCIENCES↗

Clusters of Spikes in CMOS Image Sensors Irradiated by Protons and Neutrons

The distribution of pixels with high-value dark current in CMOS image sensors irradiated by protons with the energy of 1000 MeV and neutrons with a continuous spectrum simulating the energy spectrum of atmospheric neutrons is explored. Data on generation of spike clusters in the irradiated sensors and the exposure time influence on the cluster parameters are obtained.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗