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At least 325 records · Page 18

The weathered bedrock vadose zone: A hidden control on water availability in the western United States (Final Technical Report)

This report summarizes the research completed during the project entitled "The weathered bedrock vadose zone: A hidden control on water availability in the western United States" (Award: DE-SC0018039). The report covers work completed between 9/15/17 and 9/14/20. The objective of the exploratory project work was to evaluate the overarching hypothesis that the subsurface underlying actively eroding landscapes is systematically structured as a result of a balance between weathering and erosion and that this structure leads to dynamic moisture storage within weathered rock. To accomplish project objectives, we characterized hillslope weathering profile structure and conducted subsurface moisture monitoring across four study sites with comparable bedrock types but differing erosion rate and hydroclimate: The Angelo Coast Range Reserve (ACRR), Sagehorn-Russell Ranch (SRR), Antelope Valley Ranch (AVR), and the LBNL Watershed Function Scientific Focus Area (SFA). New characterization and monitoring infrastructure at the AVR and SFA sites was established through this project and enables long-term monitoring of hydrologic and carbon fluxes at the sites for comparison with long-term monitoring in other sites. Deep drilling, downhole logging, and characterization of chemistry and porosity of rock recovered from drilling reveals two weathering fronts across the sites. A shallower front is marked by the extent of pervasive fracturing and oxidation of pyrite and organic carbon. A deeper weathering front is marked by the appearance of open fractures and discoloration. At the AVR site, multiple ridge tops of different hillslope length were investigated to establish the relationship between the weathering front and topography. Drilling reveals that the fraction of the hillslope relief that is weathered scales with hillslope length, consistent with the theoretical framework that guided the project relating groundwater drainage with landscape evolution. With the establishment of new boreholes, we have documented significant water storage in weathered bedrock using low-field borehole nuclear magnetic resonance (NMR) across all four sites. In the upper 4 m of bedrock, the average water contents at ACRR, AVR, SRR, and SFA are approximately 25%, 16%, 25%, 23% respectively. At the ACRR site, where long-term monitoring via neutron probe surveys and time-domain transmission sensors are available, we have demonstrated that NMR reliably records moisture content and importantly, moisture content dynamics in weathered bedrock. Across all sites, our NMR monitoring has also revealed that a considerable fraction of the water storage occurs in fractures or pores that are significantly larger than the fine-grained bedrock matrix of the parent rock. To identify the proportion of water storage occurring in fractures and large pores, we analyzed the NMR signal by evaluating both the sum of echoes and an inversion of the NMR signal for a distribution of T2 relaxation times. Both methods reveal that at least 20% of the water storage occurs in fractures and larger pores across all sites. To constrain the interpretation of the in-situ field-scale NMR measurements, we compare the NMR response in the field to independent pore-structure information obtained via helium pycnometry. Results support the inference that dynamic seasonal water storage is dominantly restricted to the fracture network, which can reach 7% of the total volume. This dynamic range in water content is comparable to that of some soils, underscoring the need to understand how this region of the Earth System is structured, and functions as a hydrologic reservoir.

58 GEOSCIENCES↗

Effect of soil texture on the microwave emission from soils

The intensity brightness temperature of the microwave emission from the soil is determined primarily by its dielectric properties. The large difference between the dielectric constant of water and that of dry soil produces a strong dependence of the soil's dielectric constant on its moisture content. This dependence is effected by the texture of the soil because the water molecules close to the particle surface are tightly bound and do not contribute significantly to the dielectric properties. Since this surface area is a function of the particle size distribution (soil texture), being larger for clay soils with small particles, and smaller for sandy soils with larger particles; the dielectric properties will depend on soil texture. Laboratory measurements of the dielectric constant for soils are summarized. The dependence of the microwave emission on texture is demonstrated by measurements of brightness temperature from an aircraft platform for a wide range of soil textures. It is concluded that the effect of soil texture differences on the observed values can be normalized by expressing the soil moisture values as a percent field capacity for the soil.

Schmugge, T. J.↗

Effect of texture on microwave emission from soils

The intensity brightness temperature, T(B), of the microwave emission from the soil is determined primarily by its dielectric properties. The large difference between the dielectric constant of water and that of dry soil produces a strong dependence of the soil's dielectric constant on its moisture content. This dependence is effected by the texture of the soil because the water molecules close to the particle surface are tightly bound and do not contribute significantly to the dielectric properties. Since this surface area is a function of the particle size distribution (soil texture), being larger for clay soils with small particles, and smaller for sandy soils with larger particles, the dielectric properties will depend on soil texture. This dependence has been demonstrated by laboratory measurements of the dielectric constant for soils which are briefly summarized. The dependence of the microwave emission on texture is demonstrated by measurements of T(B) from an aircraft platform for a wide range of soil textures. It is concluded that the effect of soil texture differences on the observed T(B) values can be normalized by expressing the soil moisture values as a percentage of field capacity for the soil.

Schmugge, T. J.↗

Remote sensing of surface soil moisture

The unique thermal and dielectric properties of water afford two possibilities for remotely sensing the moisture content in the surface layer of the soil. Observations of the diurnal range of surface temperature, the microwave brightness temperature (emissivity) and radar backscatter of the soil have shown correlations of up to 0.9 with the moisture in the surface layer (about 5 cm thick). The microwave techniques appear to maintain their sensitivity to moisture variations in the presence of a crop canopy. Observations of microwave brightness temperature from satellite platforms have qualitatively confirmed this sensitivity for a wide range of conditions.

Schmugge, T.↗

Relationships between soil moisture-holding properties and soil texture, organic matter content, and bulk density

Specimens from the surface horizon and the subsoil of 62 soil horizons in Hedmark and Oppland were investigated to study how the mechanical composition of the soil, the organic matter content and the bulk density affect their porosity and air capacity and their total and available water content. Most of the specimens belonged to the loam group, and a smaller number was from sandy and silty types of soil. Equations were established to make it possible to calculate the water retention curves and the amount of available water from the above mentioned parameters. As a rule, errors derived from the equations are no greater than those which are found in similar research in other countries.

Riley, H. C. F.↗

Definition of a Technology Validation Mission for P-band Reflectometry using Signals of Opportunity

Root-Zone Soil Moisture (RZSM) (moisture profile in the top meter of soil) and Snow Water Equivalent (SWE) (total snow pack water content) are identified as priority target variables in the ESAS 2017 decadal survey [1] with critical roles in hydrology and water management. RZSM estimates are vital for understanding multiple Earth system processes and forecasting (for example, droughts [2]). Simultaneous knowledge of surface and RZSM could enable a breakthrough in estimating key unobserved hydrologic fluxes and reduce uncertainty in net ecosystem exchange (NEE), carbon balance [3] discharge estimates, and crop yield forecasts [4] .With the high albedo and insulating properties of snow, monitoring, SWE accumulation would provide a key constraint on the potential runoff during spring ablation while monitoring SWE disappearance rates would provide a key constraint on SWE partition into runoff vs. infiltration/recharge. [5] demonstrated that knowledge of early-spring SWE generally contributes most to streamflow forecast skill in the Western U.S. SWE is also a source of water storage that provides the water resources during spring snowmelt. Despite such potentially transformative contributions, accurate RZSM and SWE measurements are unattainable with current technology. While active/passive L-band methods (e.g. SMAP, SMOS) can reliably retrieve surface soil moisture in the top 5 cm of soil [6], [7]. RZSM estimates are only available through model assimilation of brightness temperatures with a radiative transfer and land surface models [8]. SWE estimation uses multi-frequency passive microwave techniques (e.g. [9]-[11]), which have significant problems with deeper snow and in forested and mountainous environments [12]. Signals of opportunity (SoOp) in P-band (200-400 MHz) is a new remote sensing technique with the capability of estimating both essential hydrologic variables, RZSM and SWE, circumventing many of the aforementioned limitations under all weather conditions day and night. SoOp is the re-utilization of existing powerful satellite transmissions within bands allocated for communications or navigation. P-band SoOp sensitivity to soil moisture has been demonstrated in an airborne experiment over Oklahoma in 2016 [13]. Recent theory [14] and experiments [15] have also confirmed that the reflection coefficient phase is proportional to SWE.

Garrison, J. L.↗

Data from: "Warming and the dependence of limber pine (Pinus flexilis) establishment on summer soil moisture within and above its current elevation range"

This data package contains data that were used for analysis in “Warming and the dependence of limber pine (Pinus flexilis) establishment on summer soil moisture within and above its current elevation range”, by Moyes et al. 2013. All data collection and field research were completed on Niwot Ridge, Colorado, USA.This data package contains nine comma-separated-values (.csv) files, one text (.txt) file, and two zipped seedling folders that were used for leaf area analysis. One zipped folder contains 468 .jpg photographs of seedlings, and the second contains 468 corresponding Image J-processed .jpg images that include silhouette leaf area values. .csv and .txt files can be opened using any compatible simple text-editor software such as TextEdit (Mac) and Notepad (Windows); .csv’s can also be opened using R and Microsoft Excel. Image files can be opened using Preview (Mac) and Photos (Windows). In addition, there are a total of 31 Microsoft Excel files: three .xlsx files, and 28 raw Li-Cor output .xls files. This data user’s guide is available in .pdf format, and can be opened using Adobe Acrobat Reader, or any other compatible file viewing software. Geospatial data showing field site locations are also included in the archive for use and reference. There are two geospatial formats in this archive: ESRI shapefiles (.shp) and keyhole markup-language (.kml) files. Both file types contain bounding box information, with the former being polygons, and the latter containing corner coordinates for each site. ESRI shapefiles can be opened using any geospatial software compatible with the file type (such as ESRI’s ArcGIS suite and QGIS), and .kml files are compatible with Google Earth and Google Maps.--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Continued changes in climate are projected to alter the geographic distributions of plant species, in part by affecting where individuals can establish from seed. We tested the hypothesis that warming promotes uphill redistribution of subalpine tree populations by reducing cold limitation at high elevation and enhancing drought stress at low elevation. We seeded limber pine (Pinus flexilis) into plots with combinations of infrared heating and water addition treatments, at sites positioned in lower subalpine forest, the treeline ecotone, and alpine tundra. In 2010, first-year seedlings were assessed for physiological performance and survival over the snow-free growing season. Seedlings emerged in midsummer, about 5–8 weeks after snowmelt. Low temperature was not observed to limit seedling photosynthesis or respiration between emergence and October, and thus experimental warming did not appear to reduce cold limitation at high elevation. Instead, gas exchange and water potential from all sites indicated a prevailing effect of summer moisture stress on photosynthesis and carbon balance. Infrared heaters raised soil growing degree days (base 5 °C, p < 0.001) and August–September mean soil temperature (p < 0.001). Despite marked differences in vegetation cover and meteorological conditions across sites, volumetric soil moisture content (θ) at 5–10 cm below 0.16 and 0.08 m^3 m^(−3) consistently corresponded with moderate and severe indications of drought stress in midday stem water potential, stomatal conductance, photosynthesis, and respiration. Seedling survival was greater in watered plots than in heated plots (p = 0.01), and negatively related to soil growing degree days and duration of exposure to θ < 0.08 m^3 m^(−3) in a stepwise linear regression model (p < 0.0001). We concluded that seasonal moisture stress and high soil surface temperature imposed a strong limitation to limber pine seedling establishment across a broad elevation gradient, including at treeline, and that these limitations are likely to be enhanced by further climate warming.--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Maintenance log:Amended file name error in Data User's Guide May 19 2022

54 ENVIRONMENTAL SCIENCES↗

The effect of shearing strain-rate on the ultimate shearing resistance of clay

An approach for investigating the shearing resistance of cohesive soils subjected to a high rate of shearing strain is described. A fast step-loading torque apparatus was used to induce a state of pure shear in a hollow cylindrical soil specimen. The relationship between shearing resistance and rate of shear deformation was established for various soil densities expressed in terms of initial void ratio or water content. For rate of shearing deformation studies, the shearing resistance increases initially with shearing velocity, but subsequently reaches a terminal value as the shearing velocity increases. The terminal shearing resistance is also found to increase as the density of the soil increases. The results of this investigation are useful in the rheological study of clay. It is particularly important for mobility problems of soil runways, since the soil resistance is found to be sensitive to the rate of shearing.

Cheng, R. Y. K.↗

Evaluation of Radar Vegetation Indices for Vegetation Water Content Estimation Using Data from a Ground-Based SMAP Simulator

Vegetation water content (VWC) is an important component of microwave soil moisture retrieval algorithms. This paper aims to estimate VWC using L band active and passive radar/radiometer datasets obtained from a NASA ground-based Soil Moisture Active Passive (SMAP) simulator known as ComRAD (Combined Radar/Radiometer). Several approaches to derive vegetation information from radar and radiometer data such as HH, HV, VV, Microwave Polarization Difference Index (MPDI), HH/VV ratio, HV/(HH+VV), HV/(HH+HV+VV) and Radar Vegetation Index (RVI) are tested for VWC estimation through a generalized linear model (GLM). The overall analysis indicates that HV radar backscattering could be used for VWC content estimation with highest performance followed by HH, VV, MPDI, RVI, and other ratios.

soil moisture↗

The first Earth Resources Technology Satellite - Nearly two years of operation

A brief status report is given of the ERTS-1 satellite system as of June, 1974, and some applications of the ERTS-1 images are discussed. The multispectral images make it possible to identify or measure the quality and composition of water, the potential water content of snow, the moisture and possible composition of soils, the types and state of vegetation cover, and factors relating to stresses on the environment. The orthographic view of the earth provided by the satellite makes it possible to rapidly produce thematic maps, on a scale of 1:250,000, of most areas of the world. The regular, repetitive coverage provided by ERTS-1 every 18 days is important in areas such as water-supply and flood-damage studies. The use of ERTS-1 imagery for land-use planning, wetlands surveying, assessing marine resources, and observing processes such as desertification in the African Sahel is discussed.

Nordberg, W.↗

Spectral reflectance relationships to leaf water stress

Spectral reflectance data were collected from detached snapbean leaves in the laboratory with a multiband radiometer. Four experiments were designed to study the spectral response resulting from changes in leaf cover, relative water content of leaves, and leaf water potential. Spectral regions included in the analysis were red (630-690 nm), NIR (760-900 nm), and mid-IR (2.08-2.35 microns). The red and mid-IR bands showed sensitivity to changes in both leaf cover and relative water content of leaves. The NIR was only highly sensitive to changes in leaf cover. Results provided evidence that mid-IR reflectance was governed primarily by leaf moisture content, although soil reflectance was an important factor when leaf cover was less than 100 percent. High correlations between leaf water potentials and reflectance were attributed to covariances with relative water content of leaves and leaf cover.

Ripple, William J.↗

The effect of shearing strain-rate on the ultimate shearing resistance of clay

The shearing resistance of cohesive soils subjected to a high rate of shearing strain was investigated. A fast step-loading torque apparatus was used to induce a state of pure shear in a hollow cylindrical soil specimen. The relationship between shearing resistance and rate of shear deformation was established for various soil densities expressed in terms of initial void ratio or water content. For rate of shearing deformation studies to date, the shearing resistance increases initially with shearing velocity but subsequently reaches a terminal value as the shearing velocity increases. The terminal shearing resistance is also found to increase as the density of the soil increases. The results are useful in the rheological study of clay. It is particularly important for mobility problems of soil runways, since the soil resistance is found to be sensitive to the rate of shearing.

Cheng, R. Y. K.↗

Soil Environmental Conditions in the East River Watershed, CO

This dataset contains depth-resolved soil environmental variables collected between June 2016 and October 2018 from the Bradley Meadow site in the East River watershed. Datalogger output from 7 Campbell CS655 12 cm Soil Moisture and Temperature Sensors including depth, temperature, volumetric water content, and electrical conductivity are included in ‘BM_Merged_T_VWC_0616_10_18.csv’. Sensors were installed in June 2016. Data have been processed to merge raw sensor data and to remove additional variables. No additional QA/QC was performed. Measured pCO2 and depth are contained in ‘BM_EGM_WELL_CO2.csv’. These data represent gas well samples measured via injection using a PP Systems EGM-5 infra-red gas analyzer as described in the methods section. Measured CO2 surface flux values are contained in 'BM_EGM_Surface_Flux.csv'. These were measured using the PP Systems EGM-5 with the Soil Respiration Chamber attachment. Multiple reps are reported for each measurement including CO2 flux rate calculations using built-in linear and quadratic function methods, and average and standard deviations are taken across all reps and calculation methods.

54 ENVIRONMENTAL SCIENCES↗

Data from: Quantifying and correcting for pre-assay CO2 loss in short-term carbon mineralization assays

The active fraction of soil organic carbon is an important component of soil health and often is quickly assessed as the pulse of CO2 released by re-wetting dried soils in short-term (24–72 h) assays. However, soils can lose carbon (C) as they dry and, if soil samples vary in moisture content at sampling, differential C loss during the pre-assay dry-down period may complicate the assay's interpretations. We examined the impact of pre-assay CO2 loss in a long-cultivated agricultural soil at initial moisture contents of 30 %, 50 %, and 70 % water-filled pore space (WFPS). We found that 50 % and 70 % WFPS treatments lost more C during drying than did those in the 30 % WFPS treatment and that dry-down losses led to a 26 %–32 % underestimate of their CO2 pulses. We developed a soil-specific correction factor to account for these initial soil moisture effects. Future C mineralization studies may benefit from similar corrections.

Belanger, Matthew↗

Metagenome-assembled genomes from topsoils collected during NEON campaign in East River, CO (06/14/2018-06/28/2018)

The Watershed Function Science Focus Area (WF SFA) at Lawrence Berkeley National Lab is working to build a mechanistic understanding of the distribution and dynamics of biogeochemical processes in mountainous watersheds and their response to perturbation. In June 2018, the NEON (National Ecological Observatory Network) Airborne Observatory Platform (AOP) performed a taskable airborne imaging campaign to collect visible to shortwave infrared (VSWIR) imaging spectroscopy and LiDAR data across 330 km2 in the Upper East River at Crested Butte, CO. We conducted a parallel ground sampling campaign to sample vegetation traits, as well as soil physical, chemical, and microbiological characteristics. We collected these samples from 438 sites across 12 locations spanning much of the elevation, topographic, and geologic variability across the study area. A subset of 250 samples were used for soil metagenomics which is presented here. In addition, at each site, vegetation samples were collected to measure species-specific leaf water content and leaf mass area, foliar elemental composition and foliar CN stable isotope ratios. Soil samples were collected to measure soil physical properties which include bulk density and soil texture analysis. A suite of soil chemical properties was measured from the samples collected at each site, including pH, organic matter, concentrations exchangeable cations, total elemental composition, and the concentrations of extractable N pools (e.g. total free amino acids, ammonium, nitrate, dissolved organic N, and total dissolved N). Additionally, we have measured soil microbial biomass CN stoichiometry. Here, we present 1982 metagenome-assembled genomes (MAGs) for the bacterial and archaeal community from topsoil collected from during NEON 2018 campaign. All metagenomes were sequenced at JGI (Joint Genome Institute) (GOLD Study ID: Gs0149986). Metagenomes were assembled using JGI Metagenome Workflow (10.1128/mSystems.00804-20). The dataset includes (1) zip files for 1982 MAG fasta files (neon_genomes1-5.tar.gz, split into 5 tarballs to keep tarballs under 0.5 GB), (2) neon_Gs0149986_samples_soilproperties_metagenomes.csv: the sample information together with the accession numbers for the underlying metagenomes and the associated soil physical and chemical measurements in NMDC (National Microbiome Data Collaborative) compliant format, (3) neon_Gs0149986.kml: location bounding box file for the sampled locations, (4) samples.csv: sample metadata file used to register Internationall Generic Sample Numbers (IGSNs), (5) flmd.csv: file level metadata file, and (6) dd.csv: data dictionary file. This work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231.

2018 NEON and 2025 CHESS Campaigns↗

Quantifying and correcting for pre-assay CO 2 loss in short-term carbon mineralization assays

The active fraction of soil organic carbon is an important component of soil health and often is quickly assessed as the pulse of CO 2 released by re-wetting dried soils in short-term (24–72 h) assays. However, soils can lose carbon (C) as they dry and, if soil samples vary in moisture content at sampling, differential C loss during the pre-assay dry-down period may complicate the assay's interpretations. We examined the impact of pre-assay CO 2 loss in a long-cultivated agricultural soil at initial moisture contents of 30 %, 50 %, and 70 % water-filled pore space (WFPS). We found that 50 % and 70 % WFPS treatments lost more C during drying than did those in the 30 % WFPS treatment and that dry-down losses led to a 26 %–32 % underestimate of their CO 2 pulses. We developed a soil-specific correction factor to account for these initial soil moisture effects. Future C mineralization studies may benefit from similar corrections.

54 ENVIRONMENTAL SCIENCES↗

Detecting forest response to droughts with global observations of vegetation water content

Droughts in a warming climate have become more common and more extreme, making understanding forest responses to water stress increasingly pressing. Analysis of water stress in trees has long focused on water potential in xylem and leaves, which influences stomatal closure and water flow through the soil-plant-atmosphere continuum. At the same time, changes of vegetation water content (VWC) are linked to a range of tree responses, including fluxes of water and carbon, mortality, flammability, and more. Unlike water potential, which requires demanding in situ measurements, VWC can be retrieved from remote sensing measurements, particularly at microwave frequencies using radar and radiometry. Here, we highlight key frontiers through which VWC has the potential to significantly increase our understanding of forest responses to water stress. To validate remote sensing observations of VWC at landscape scale and to better relate them to data assimilation model parameters, we introduce an ecosystem-scale analogue of the pressure-volume curve, the non-linear relationship between 44 average leaf or branch water potential and water content commonly used in plant hydraulics. The 45 sources of variability in these ecosystem-scale pressure-volume curves and their relationship to 46 forest response to water stress are discussed. We further show to what extent diel, seasonal, and 47 decadal dynamics of VWC reflect variations in different processes relating the tree response to 48 water stress. VWC can also be used for inferring belowground conditions – which are difficult to 49 impossible to observe directly. Lastly, we discuss how a dedicated geostationary spaceborne 50 observational system for VWC, when combined with existing datasets, can capture diel and 51 seasonal water dynamics to advance the science and applications of global forest vulnerability to 52 future droughts.

54 ENVIRONMENTAL SCIENCES↗

Iron and Phosphorus Geochemistry in High-Centered and Low-Centered Polygon Soils from the Barrow Environmental Observatory, Utqiagvik, Alaska, 2015

This dataset provides chemical characterization of soil cores obtained in triplicate from center and trough positions of a high-centered polygon and center, ridge, and trough positions of a low-centered polygon in the NGEE Arctic research area within the Barrow Environmental Observatory, Utqiagvik, Alaska. Photographs of the 15 collected cores are provided. Cores were collected to thaw depth in early October 2015 and subsequently divided into subsamples for analysis, which included bulk soil horizons (organic or mineral) and finer scale depth increments (minimum 4 cm thickness per increment). Bulk horizons and depth increments were characterized using sequential chemical extractions for Fe and P and with Fe K-edge x-ray absorption spectroscopy. Additional soil parameters such as loss-on-ignition, gravimetric water content, and carbon and nitrogen concentrations were also quantified for bulk horizons. This dataset includes four csv files, one pdf user guide, and one zip folder of *.jpg photos.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗