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At least 325 records · Page 18

Rank-k Maximal Statistics for Divergence and Probability of Misclassification

A technique is developed for selecting from n-channel multispectral data some k combinations of the n-channels upon which to base a given classification technique so that some measure of the loss of the ability to distinguish between classes, using the compressed k-dimensional data, is minimized. Information loss in compressing the n-channel data to k channels is taken to be the difference in the average interclass divergences (or probability of misclassification) in n-space and in k-space.

Decell, H. P., Jr.↗

Toward the modeling of land use change: A spatial analysis using remote sensing and historical data

It was hypothesized that the chronological observation of land use change could be shown to follow a predictable pattern and these patterns could be correlated with other statistical data to develop transition probabilities suitable for modeling purposes. A literature review and preliminary research, however, indicated a totally stochastic approach was not practical for simulating land use change and thus a more deterministic approach was adopted. The approach used assumes the determinants of the land use conversion process are found in the market place, where land transactions among buyers and sellers occur. Only one side of the market transaction process is studied, however, namely, the purchaser's desires in securing an ideal or suitable site. The problem was to identify the ideal qualities, quantities or attributes desired in an industrial site (or housing development), and to formulate a general algorithmic statement capable of identifying potential development sites. Research procedures involved developing a list of variables previously noted in the literature to be related to site selection and streamlining the list to a set suitable for statistical testing. A sample of 157 industries which have located (or relocated) in the 16-county Knoxville metropolitan region since 1950 was selected for industrial location analysis. Using NASA color infrared photography and Tennessee Valley Authority historical aerial photography, data were collected on the spatial characteristics of each industrial location event. These data were then subjected to factor analysis to determine the interrelations of variables.

Honea, R. B.↗

Use-Inspired, Process-Oriented GCM Selection: Prioritizing Models for Regional Dynamical Downscaling

Dynamical downscaling is a crucial process for providing regional climate information for broad uses, using coarser-resolution global models to drive higher-resolution regional climate simulations. The pool of global climate models (GCMs) providing the fields needed for dynamical downscaling has increased from the previous generations of the Coupled Model Intercomparison Project (CMIP). However, with limited computational resources, the need for prioritizing the GCMs for subsequent downscaling studies remains. GCM selection for dynamical downscaling should focus on evaluating processes relevant for providing boundary conditions to the regional models and be inspired by regional uses such as the response of extremes to changes in the boundary conditions. This leads to the need for metrics representing processes of relevance to diverse stakeholders and subregions of a domain. Procedures to account for metric redundancy and the statistical distinguishability of GCM rankings are required. Further, procedures for selecting realizations from ensembles of top-performing GCM simulations can be used to span the range of climate change signals in multiple ways. As a result, distinct weighting of metrics and prioritization of particular realizations may depend on user needs. We provide high-level guidelines for such region-specific evaluations and address how CMIP7 might enable dynamical downscaling of a representative sample of high-quality models across representative shared socioeconomic pathways (SSPs).

54 ENVIRONMENTAL SCIENCES↗

Optimal binning of correlated measurements

Experimental measurements are commonly represented on a discrete grid, requiring a balance between granularity and statistical noise. Two strategies have traditionally been used to improve such representations: selecting an appropriate bin width to control discretization error and applying kernel-based smoothing to suppress fluctuations. Despite their shared goal, these approaches have largely developed independently, without a unified statistical description of how discretization and correlation jointly determine measurement precision. Here, we extend the discussion of optimal interval averaging to a correlation-aware setting by Gaussian process regression, which explicitly accounts for correlations among neighboring bins. Starting from first principles, we derive the mean-squared error of discretized measurements and obtain closed-form asymptotic expressions for the optimal bin width and correlation length. When recast in reduced variables, the theory reveals distinct universal scaling laws governing the error in the correlation-free and correlation-controlled regimes. Characterized by intrinsically smooth intensity profiles and counting-based statistics, neutron scattering measurements are well suited for demonstrating the enhanced error contraction enabled by inter-bin correlations. We show that such improvement is achievable over the experimentally accessible Q-range and across multiple instruments and material systems. These results show that explicitly accounting for correlations systematically reshapes the limits of precision in discretized, noise-limited measurements. More broadly, the framework provides a transferable statistical foundation for optimizing data representation, inference, and experimental design across the physical and data sciences.

Tung, Chi-Huan [ORNL] (ORCID:0000000221972074)↗

Long-term stability-degradation analysis of DUNE SiPMs in Liquid Nitrogen

We developed a cryogenic photon readout system to monitor arrays of DUNE SiPMs operating at various over-voltages in liquid nitrogen (LN2) for over three months. Photoelectron signals were read out simultaneously via weak capacitive coupling to the micro-FEMB, a 32-channel charge sensitive readout board designed for 77 K to 300 K operation in liquid argon time projection chambers (LAr-TPCs). A waveform snippet acquisition scheme was implemented to capture waveform signals whenever they exceeded a predetermined trigger level; consequently, empty waveforms were discarded. Selected SiPM parameters were monitored to detect any deviations beyond statistical fluctuations. While some parameters exhibited ~1σ variations over the 3-month test period, there was no evidence of drift being enhanced when operating at 4 V or 5 V compared to a 3 V over-voltage. However, a discernible PDE drop was observed across all channels, which warrants further investigation. In addition, we demonstrated that our system can simultaneously read out single photons from a selected group of SiPMs at room temperature.

Tsang, Thomas [Brookhaven]↗

Determination of model structure and parameters of an airplane from pre- and post-stall flight data

A procedure for airplane model structure determination from flight data based on modified stepwise regression (MSR), several decision criteria and postulated aerodynamic model equations is presented. The MSR is constructed to force a linear model for the aerodynamic coefficient first, then select significant nonlinear terms and reject nonsignificant terms from the model. In addition to the statistical criteria in the stepwise regression, the prediction sum of squares (PRESS) criterion and analysis of residuals are examined for the selection of an adequate model. The procedure is used in examples with simulated and real flight data. It is shown that the MSR performs better than the ordinary stepwise regression and that the technique can be also applied to the large amplitude maneuvers.

Klein, V.↗

Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron

Abstract New variants of SARS-CoV-2 show remarkable heterogeneity in their relative fitness over both time and space. In this paper we extend the tools available for estimating the selection strength for new SARS-CoV-2 variants to a hierarchical, mixed-effects, renewal equation model. This formulation allows us to estimate selection effects at the global level while incorporating both measured and unmeasured heterogeneity among countries. Applying this model to the spread of Omicron in forty countries, we find evidence for very strong but very heterogeneous selection effects. To test whether this heterogeneity is explained by differences in the immune landscape, we considered several measures of vaccination rates and recent population-level infection as covariates, finding moderately strong, statistically significant effects. We also found a significant positive correlation between the selection advantage of Delta and Omicron at the country level, suggesting that other region-specific explanatory variables of fitness differences do exist. Our method is implemented in the Stan programming language, can be run on standard consumer-grade computing resources, and will be straightforward to apply to future variants.

59 BASIC BIOLOGICAL SCIENCES↗

A Measurement of the Millimeter Emission and the Sunyaev-Zel'dovich Effect Associated with Low-Frequency Radio Sources

We present a statistical analysis of the millimeter-wavelength properties of 1.4 GHz-selected sources and a detection of the Sunyaev-Zel'dovich effect associated with the halos that host them. We stack data at 148, 218 and 277 GHz from the Atacama Cosmology Telescope at the positions of a large sample of radio AGN selected at 1.4 GHz. The thermal Sunyaev-Zel'dovich (SZ) effect associated with the halos that host the AGN is detected at the 5 sigma level through its spectral signature, representing a statistical detection of the SZ effect in some of the lowest mass halos (average M(sub 200) approximately equals 10(sup 13) solar mass h(sub 70)(exp −1) ) studied to date. The relation between the SZ effect and mass (based on weak lensing measurements of radio galaxies) is consistent with that measured by Planck for local bright galaxies. In the context of galaxy evolution models, this study confirms that galaxies with radio AGN also typically support hot gaseous halos. Adding Herschel observations allows us to show that the SZ signal is not significantly contaminated by dust emission. Finally, we analyze the contribution of radio sources to the angular power spectrum of the cosmic microwave background.

radio continuum↗

Laser altimetry simulator. Version 3.0: User's guide

A numerical simulator of a pulsed, direct detection laser altimeter has been developed to investigate the performance of space-based laser altimeters operating over surfaces with various height profiles. The simulator calculates the laser's optical intensity waveform as it propagates to and is reflected from the terrain surface and is collected by the receiver telescope. It also calculates the signal and noise waveforms output from the receiver's optical detector and waveform digitizer. Both avalanche photodiode and photomultiplier detectors may be selected. Parameters of the detected signal, including energy, the 50 percent rise-time point, the mean timing point, and the centroid, can be collected into histograms and statistics calculated after a number of laser firings. The laser altimeter can be selected to be fixed over the terrain at any altitude. Alternatively, it can move between laser shots to simulate the terrain profile measured with the laser altimeter.

Abshire, James B.↗

Growth Curve Parameterization of Metabolic Activity of Yeast Cells for BioSentinel

The goal of the BioSentinel small satellite payload is to measure the effect of deep space radiation on the growth and metabolic activity of yeast cells. Raw test data is generated by fluidics cards containing yeast cells rehydrated at different periods, with metabolic activity measured by the reduction of alamarBlue. Each card well has a sensor array that measures the amount of red, green, and infrared light transmitted through the yeast culture. This illumination data is then converted to absorbance values, which are further converted into concentrations. The ultimate objective is to convert these concentrations into biologically-relevant metrics that can be compared against one another to determine changes due to differential radiation exposure. Beginning with IR absorbance data (corresponding to cell density) from ground studies, three parameters from a sigmoidal growth curve were extracted and analyzed: 𝜆 (lag phase), 𝜇 (max growth rate), and A (max cell growth). The data was fit to the Gompertz model of microbial growth using non-linear regression (Minitab), as the fit error was reduced compared to the simpler logistic growth curve. Graphs showed that the data contained a discrepancy (drift) in the lag phase that is attributable to a slow, constant loss of moisture. Correcting this discrepancy by fitting the first 25 hours of the data to a power function and subtracting these values from the absorbance readings obtained a better statistical fit to the growth curve in the lag phase. A power fit was selected over a linear fit because it reflected the effects of constant volume loss. This correction to the BioSentinel data analysis pipeline will enable quantitative statistical analysis of the effect of different levels of deep space radiation on yeast cells. Future work includes automation of drift correction and curve modeling to extract these parameters directly from data.

Growth Curve↗

Evaluation of criteria for selecting the spectral attributes of digital LANDSAT MSS imagery for discriminating lithological units in the lower Curaca River Valley, Bahia

The use of spectral attributes criteria was investigated, based on measures of statistical distance of separability between thematic classes in MSS digital LANDSAT imagery, in order to select the best subsets of channels in composite colors for the detection and discrimination of lithological units in the lower valley of Curaca River, State of Bahia, Brazil. Three situations were investigated: (1) selection of the three best channels, considering all of the original bands (channels 4, 5, 6, and 7); (2) selection of the three best bands, considering the six MSS band-ratios (channels 4/5, 4/6. 4/7, 5/6, 5/7, and 6/7); and (3) selection of the three best bands in a hybrid approach (the four original bands and the six ratios). A visual analysis was done on color composite images using the selected sets. Results show that the hybrid product (bands 4, 5/7, and 7 with green, blue, and red respectively) and the Normal Color Composite (bands 4, 5, and 7 with blue, green, and red colors respectively) had the best performance.

Paradella, W. R.↗

Surface-supported cluster catalysis: Ensembles of metastable states run the show

It has recently been demonstrated that the dynamic behaviour of surface-supported nanocluster catalysts in realistic reaction conditions defies conventional models used in catalysis. This opens new doors in catalysis by giving more leverage in catalyst design, but also requires a major revision of the understanding of how dynamic heterogeneous catalytic interfaces operate, as well as of the computational approaches of catalyst modelling, and experimental methods of catalyst characterization. Key aspects of the new paradigm include the collective action of many catalyst states that form a statistical ensemble in reacting conditions, the catalytic activity and selectivity being driven by rare and metastable catalyst states, reaction thermodynamics and kinetics being controlled by different states of the catalyst, broken scaling relationships, non-Arrhenius behaviours, and catalyst dynamic restructuring being an essential part of the reaction mechanism. For computation, this complexity means the departure from the standard DFT calculations of reaction mechanisms on a single catalyst structure. For experiment, it calls for the development of operando characterization tools with the per-site resolution and the ability to find the minority sites that govern the catalytic activity. For catalyst design, the goal becomes the creation of the catalyst state (geometric and electronic) that might not be present in the as-prepared catalyst, but would develop in the reaction conditions and would have the desired activity then. While cluster catalysts are the most dramatic in their dynamic fluxionality, other amorphous interfaces also exhibit some of it, and thus are also subject to similar paradigm revision.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Quantitative Representativeness and Constituency of the Long-Term Agroecosystem Research Network and Analysis of Complementarity with Existing Ecological Networks

Abstract Studies conducted at sites across ecological research networks usually strive to scale their results to larger areas, trying to reach conclusions that are valid throughout larger enclosing regions. Network representativeness and constituency can show how well conditions at sampling locations represent conditions also found elsewhere and can be used to help scale-up results over larger regions. Multivariate statistical methods have been used to design networks and select sites that optimize regional representation, thereby maximizing the value of datasets and research. However, in networks created from already established sites, an immediate challenge is to understand how well existing sites represent the range of environments in the whole area of interest. We performed an analysis to show how well sites in the USDA Long-Term Agroecosystem Research (LTAR) Network represent all agricultural working lands within the conterminous United States (CONUS). Our analysis of 18 LTAR sites, based on 15 climatic and edaphic characteristics, produced maps of representativeness and constituency. Representativeness of the LTAR sites was quantified through an exhaustive pairwise Euclidean distance calculation in multivariate space, between the locations of experiments within each LTAR site and every 1 km cell across the CONUS. Network representativeness is from the perspective of all CONUS locations, but we also considered the perspective from each LTAR site. For every LTAR site, we identified the region that is best represented by that particular site—its constituency—as the set of 1 km grid locations best represented by the environmental drivers at that particular LTAR site. Representativeness shows how well the combination of characteristics at each CONUS location was represented by the LTAR sites’ environments, while constituency shows which LTAR site was the closest match for each location. LTAR representativeness was good across most of the CONUS. Representativeness for croplands was higher than for grazinglands, probably because croplands have more specific environmental criteria. Constituencies resemble ecoregions but have their environmental conditions “centered” on those at particular existing LTAR sites. Constituency of LTAR sites can be used to prioritize the locations of experimental research at or even within particular sites, or to identify the extents that can likely be included when generalizing knowledge across larger regions of the CONUS. Sites with a large constituency have generalist environments, while those with smaller constituency areas have more specialized environmental combinations. These “specialist” sites are the best representatives for smaller, more unusual areas. The potential of sharing complementary sites from the Long-Term Ecological Research (LTER) Network and the National Ecological Observatory Network (NEON) to boost representativeness was also explored. LTAR network representativeness would benefit from borrowing several NEON sites and the Sevilleta LTER site. Later network additions must include such specialist sites that are targeted to represent unique missing environments. While this analysis exhaustively considered principal environmental characteristics related to production on working lands, we did not consider the focal agronomic systems under study, or their socio-economic context.

54 ENVIRONMENTAL SCIENCES↗

Improving ChemCam LIBS long-distance elemental compositions using empirical abundance trends

The ChemCam instrument on the Curiosity rover provides chemical compositions of Martian rocks and soils using remote laser-induced breakdown spectroscopy (LIBS). The elemental calibration is stable as a function of distance for Ti, Fe, Mg, and Ca. The calibration shows small, systematically increasing abundance trends as a function of distance for Al, Na, K, and to some extent, Si. The distance effect is known to be due to a dependence with distance on the relative strengths of atomic transition lines. Emission lines representing transitions from relatively low energy levels remain intense at longer distances while emission lines representing transitions from higher energy levels decrease in intensity more rapidly as a function of distance. The multivariate algorithms used to determine elemental compositions rely on a large number of emission lines in many cases, so rather than trying to correct all emission lines, a study was made of the predicted compositions as a function of distance, in order to determine an empirical correction. Abundance trends can be well approximated by a linear trend with distance within the ranges of abundances and distances observed up to ~6 m. Data from 11 distinct geological members and data groups of the Murray formation in Gale crater, Mars, were used to form the model, selecting the members and data groups yielding the best statistics. The model was tested using data from several targets observed from two different distances, and using data from the Kimberley formation, the composition of which is significantly different from the Murray formation, showing that the model works on other compositions beyond those used to build the model. For long-distance observations up to ~6 m, corrections can be made back to an equivalent composition at the median distance of ChemCam observations (2.6 m). Finally, the model has been validated up to 6.2 m, although ChemCam is able to observe bedrock targets to >7 m, and iron meteorites to distances of >9 m.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Laser activation of single group-IV colour centres in diamond

Abstract Spin-photon interfaces based on group-IV colour centres in diamond offer a promising platform for quantum networks. A key challenge in the field is realising precise single-defect positioning and activation, which is crucial for scalable device fabrication. Here we address this problem by demonstrating a two-step fabrication method for tin vacancy (SnV − ) centres that uses site-controlled ion implantation followed by local femtosecond laser annealing with in-situ spectral monitoring. The ion implantation is performed with sub-50 nm resolution and a dosage that is controlled from hundreds of ions down to single ions per site, limited by Poissonian statistics. Using this approach, we successfully demonstrate site-selective creation and modification of single SnV − centres. Our in-situ spectral monitoring opens a window onto materials tuning at the single defect level, and provides new insight into defect structures and dynamics during the annealing process. While demonstrated for SnV − centres, this versatile approach can be readily generalised to other implanted colour centres in diamond and wide-bandgap materials.

Science & Technology - Other Topics↗

Automatized convergence of optoelectronic simulations using active machine learning

A fundamental problem of optoelectronic simulations is to achieve convergence. We use statistical analysis and machine learning to effectively guide the selection of the next device to be examined based upon the expected convergence of the simulation. This active learning strategy rapidly constructs a model that predicts Poisson-Schrödinger simulations of devices and that simultaneously produces fully converged simulations.

Rouet-Leduc, Bertrand (ORCID:0000000227917949)↗

Exact and efficient hybrid Monte Carlo algorithm for accelerated Bayesian inference of gene expression models from snapshots of single-cell transcripts

Single cells exhibit a significant amount of variability in transcript levels, which arises from slow, stochastic transitions between gene expression states. Elucidating the nature of these states and understanding how transition rates are affected by different regulatory mechanisms require state-of-the-art methods to infer underlying models of gene expression from single cell data. A Bayesian approach to statistical inference is the most suitable method for model selection and uncertainty quantification of kinetic parameters using small data sets. However, this approach is impractical because current algorithms are too slow to handle typical models of gene expression. To solve this problem, we first show that time-dependent mRNA distributions of discrete-state models of gene expression are dynamic Poisson mixtures, whose mixing kernels are characterized by a piecewise deterministic Markov process. Here, we combined this analytical result with a kinetic Monte Carlo algorithm to create a hybrid numerical method that accelerates the calculation of time-dependent mRNA distributions by 1000-fold compared to current methods. We then integrated the hybrid algorithm into an existing Monte Carlo sampler to estimate the Bayesian posterior distribution of many different, competing models in a reasonable amount of time. We demonstrate that kinetic parameters can be reasonably constrained for modestly sampled data sets if the model is known a priori. If there are many competing models, Bayesian evidence can rigorously quantify the likelihood of a model relative to other models from the data. We demonstrate that Bayesian evidence selects the true model and outperforms approximate metrics typically used for model selection.

59 BASIC BIOLOGICAL SCIENCES↗