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A 5.8S nuclear ribosomal RNA gene sequence database: applications to ecology and evolution
We complied a 5.8S nuclear ribosomal gene sequence database for animals, plants, and fungi using both newly generated and GenBank sequences. We demonstrate the utility of this database as an internal check to determine whether the target organism and not a contaminant has been sequenced, as a diagnostic tool for ecologists and evolutionary biologists to determine the placement of asexual fungi within larger taxonomic groups, and as a tool to help identify fungi that form ectomycorrhizae.
Some Roles for NASA in Developing and Institutionalizing Ecological Knowledge
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Application of Spaceborne Synthetic Aperture Radar to Monitoring Seasonal Ecological and Hydrologic Processes in Boreal Forest
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Great Basin Ecological Forecasting II: Assessing and Forecasting Live Fuel Moisture Content of Wildfire Fuels for the Eastern Great Basin to Improve Wildfire Timing and Severity Predictions
The eastern Great Basin (EGB) extends throughout the states of Arizona, Colorado,Idaho, Utah, and Wyoming, covering approximately 411,000 km2. In recent years, wildfires in the EGB have increased in frequency and size, representing a growing concern for our partners at the Bureau of Land Management (BLM), the National Weather Service (NWS), and the Great Basin Coordination Center (GBCC). Live fuel moisture (LFM) is an important factor in predicting wildfire risk, as dry vegetation requires less energy to combust than wet vegetation. Land managers currently derive LFM levels from just 165 in situ sites in the EGB. In order to provide partners with a more accurate assessment of LFM, the team used data from the National Elevation Dataset, Aqua and Terra Moderate Resolution Imaging Spectroradiometer, and Suomi National Polar-orbiting Partnership Visible Infrared Imaging Radiometer Suite. These datasets include vegetation indices, evapotranspiration, and topographic variables, which were used to create biweekly forecasts of LFM throughout the EGB. An accuracy assessment was conducted using historical in situ data from our partners at the BLM and the GBCC. This model allowed our partners to make informed decisions regarding resource allocation in response to the predicted timing and severity of wildfires in the EGB.
Great Basin Ecological Forecasting II: Assessing and Forecasting Live Fuel Moisture Content of Wildfire Fuels for the Eastern Great Basin to Improve Wildfire Timing and Severity Predictions
The eastern Great Basin (EGB) extends throughout the states of Arizona, Colorado, Idaho, Utah, and Wyoming, covering approximately 411,000 sq.km. In recent years, wildfires in the EGB have increased in frequency and size, representing a growing concern for our partners at the Bureau of Land Management (BLM), the National Weather Service (NWS), and the Great Basin Coordination Center (GBCC). Live fuel moisture (LFM) is an important factor in predicting wildfire risk, as dry vegetation requires less energy to combust than wet vegetation. Land managers currently derive LFM levels from just 165 in situ sites in the EGB. In order to provide partners with a more accurate assessment of LFM, the team used data from the National Elevation Dataset, Aqua and Terra Moderate Resolution Imaging Spectroradiometer, and Suomi National Polar-orbiting Partnership Visible Infrared Imaging Radiometer Suite. These datasets include vegetation indices, evapotranspiration, and topographic variables, which were used to create biweekly forecasts of LFM throughout the EGB. An accuracy assessment was conducted using historical in situ data from our partners at the BLM and the GBCC. This model allowed our partners to make informed decisions regarding resource allocation in response to the predicted timing and severity of wildfires in the EGB.
Fisher's Peak Ecological Forecasting: Mapping Biomass to Inform Conservation Planning of a Future State Park in Southern Colorado
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Southern Bhutan Ecological Forecasting :Modeling Asian Elephant (Elephas Maximus) Habitat Suitability along the Southern Bhutan Border with NASA Earth Observations
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Ecological Monitoring and Compliance Program 2023 Report
Annual report of activities conducted under the EMAC program including biological surveys, desert tortoise compliance, ecosystem monitoring, sensitive and protected/regulated plant and animal monitoring, and habitat restoration implementation and monitoring.
Ecological Monitoring and Compliance Program 2024 Report
This report details accomplishments of the EMAC program during 2024.
Cognition from genes to ecology: individual differences incognition and its potential role in a social network
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Detecting ecological signatures of long-term human activity across an elevational gradient in the Šumava Mountains, Central Europe
Central European mountains, including the Šumava Mountains located along the Czechia/Germany border, have a long and rich anthropogenic history. Yet, documenting prehistoric human impact in Central European mountain environments remains a challenge because of the need to disentangle climate and human-caused responses in terrestrial systems. Here, we present the first reconstructed water table depths (WTDs) from two sites, Pěkná and Blatenská slať, located in the Šumava Mountains. We compare these local WTD records with new and published pollen, non-pollen palynomorphs (NPPs), plant macrofossils, geochemistry and archeological records to investigate how changes in local hydrology and human activities impacted forest succession and fire activity throughout the Holocene across an elevational gradient. Using a generalized additive model, our results suggest that changes in forest succession and fire activity have been primarily caused by climate throughout the Holocene. However, humans have been utilizing mountain environments and their resources continuously since ∼4600 cal yr BP, thus playing a secondary role in modifying forest succession to increase resources beneficial to both humans and grazers. Over the last 1000 years, we provide evidence of directly observed human-caused modifications to the landscape. These results contribute to a growing body of literature illustrating human activities and landscape modifications in Central European mountains.
Biomimetic layered, ecological, advanced, multi-functional film for sustainable packaging
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A global soil plasmidome resource unveils functional and ecological roles of plasmids in soil microbiomes
Plasmids play significant roles in microbial adaptation to ecosystems, yet their dynamics remain poorly understood due to identification challenges. We present the Global Soil Plasmidome Resource (GSPR), a comprehensive dataset of 98,728 plasmid sequences amassed from 6860 terrestrial microbial communities and isolates. We explore this resource through various computational approaches, including phylogenetic diversity analysis, host prediction, and extensive functional annotation, to understand the contribution of plasmids to the genetic and functional diversity in soil, correlating these findings with sample type, as well as the soil habitat they were retrieved from. Our analysis reveals insights into plasmid-encoded functions such as effector modules, quorum sensing, and stress resistance, which may contribute to their persistence and microbial adaptation in soil. Furthermore, CRISPR analysis suggests a prevalent role of these elements related to intra-plasmid competition. By contrasting plasmids from cultivated and uncultivated organisms, we identify important functions that expand existing knowledge of plasmid roles in these habitats. This study represents a notable step forward in elucidating plasmid diversity and function within soil microbiomes and establishes a foundational framework for exploring their roles in natural environments.
Population ecology and biogeochemical implications of ssDNA and dsDNA viruses along a permafrost thaw gradient
Anthropogenic-driven climate change is accelerating permafrost thaw, threatening to release vast carbon stores through increased microbial activity. While microbial roles are increasingly studied, the contributions of viruses remain largely unexplored, in part due to soil-associated technical challenges that have hindered their detection and characterization. Here, we applied an optimized virion enrichment workflow along a permafrost thaw gradient, identifying 9,963 viral populations (vOTUs), including single- and double-stranded DNA viruses, with 99.9% novelty compared to other soils. Hosts were predicted for 38% of vOTUs, spanning nine archaeal, and 36 bacterial phyla, 22% of which were linked to metagenome-assembled genomes, including key carbon-cycling taxa. Genomic analyses revealed 811 putative auxiliary metabolic genes (AMGs) from 658 vOTUs, nearly half involved in carbon processing. These included 59 glycoside hydrolases (GH) across nine GH families, 45 for monosaccharide degradation, and seven involved in short-chain fatty acid and C1 metabolism, linking viruses to both early and late stages of carbon turnover. Additionally, six vOTUs carried racD, which may stabilize microbial necromass and promote long-term carbon storage. Viral and AMG functional diversity increased with thaw stage, indicating that viruses might participate in a broadening range of microbial metabolic processes as permafrost thaws. These findings expand our understanding of virus contributions in microbial carbon processing and suggest their important role in deciphering soil carbon fate under changing climate conditions.