Search NASA⌕ Search

SEARCH · Search NASA

Results for “Evolutionary”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 343 records · Page 19
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Precise Dynamical Masses and Orbital Fits for β Pic b and β Pic c

We present a comprehensive orbital analysis to the exoplanets β Pictoris b and c that resolves previously reported tensions between the dynamical and evolutionary mass constraints on β Pic b. We use the Markov Chain Monte Carlo orbit code orvara to fit 15 years of radial velocities and relative astrometry (including recent GRAVITY measurements), absolute astrometry from Hipparcos and Gaia, and a single relative radial velocity measurement between β Pic A and b. We measure model-independent masses of 9.3{sub −2.5}{sup +2.6} M {sub Jup} for β Pic b and 8.3 ± 1.0 M {sub Jup} for β Pic c. These masses are robust to modest changes to the input data selection. We find a well-constrained eccentricity of 0.119 ± 0.008 for β Pic b, and an eccentricity of 0.21{sub −0.09}{sup +0.16} for β Pic c, with the two orbital planes aligned to within ∼05. Both planets’ masses are within ∼1σ of the predictions of hot-start evolutionary models and exclude cold starts. We validate our approach on N-body synthetic data integrated using REBOUND. We show that orvara can account for three-body effects in the β Pic system down to a level ∼5 times smaller than the GRAVITY uncertainties. Systematics in the masses and orbital parameters from orvara’s approximate treatment of multiplanet orbits are a factor of ∼5 smaller than the uncertainties we derive here. Future GRAVITY observations will improve the constraints on β Pic c’s mass and (especially) eccentricity, but improved constraints on the mass of β Pic b will likely require years of additional radial velocity monitoring and improved precision from future Gaia data releases.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2021

Astrometric Membership Tests for the Zinn–Newell–Gibson UV-bright Stars in Galactic Globular Clusters

In 1972, Zinn, Newell, & Gibson (ZNG) published a list of 156 candidate UV-bright stars they had found in 27 Galactic globular clusters (GCs), based on photographs in the U and V bands. UV-bright stars lie above the horizontal branch (HB) and blueward of the asymptotic giant branch (AGB) and red giant branch in the clusters’ color–magnitude diagrams. They are in rapid evolutionary phases—if they are members and not unrelated bright foreground stars. The ZNG list has inspired numerous follow-up studies, aimed at understanding late stages of stellar evolution. However, the ZNG candidates were presented only in finding charts, and celestial coordinates were not given. Using my own collection of CCD frames in u and V, I have identified all of the ZNG objects, and have assembled their coordinates, parallaxes, and proper motions from the recent Gaia Early Data Release 3 (EDR3). Based on the Gaia astrometry, I have determined which objects are probable cluster members (45% of the sample). For the members, using photometry from EDR3, I have assigned the stars to various evolutionary stages, including luminous post-AGB stars, and stars above the HB. I point out several ZNG stars of special interest that have still, to my knowledge, never been studied in detail. This study is an adjunct to a forthcoming survey of the Galactic GCs in the uBVI photometric system, designed for detection of low-gravity stars with large Balmer discontinuities.

47 OTHER INSTRUMENTATION↗
DOE OSTI2021

Light Element Abundances and Multiple Populations in M53

We present results from a study of 94 red giant stars in the globular cluster M53. We use low-resolution spectra to measure the strength of CN and CH features at ∼3800 and 4300 Å, respectively. The strengths of these features are used to classify stars into a CN-enhanced and CN-normal population and to measure C and N abundances in all 94 stars. We find the red giant branch stars to be evenly split between the two populations identified, and observe the presence of CN-enhanced stars on the asymptotic giant branch. In addition, we identify five CH star candidates based on the strength of their CN and CH band features, and the presence of a P-branch in their CH band. We compare our identification of multiple populations to those based on the Na–O anticorrelation and pseudo-color indices in Hubble Space Telescope UV photometry, and find general agreement between all three methods. Our large sample size also allows us to study the radial distribution of each population, and we find that the CN-enhanced population is more centrally concentrated. We use our C and N measurements to compare the evolutionary changes in these elements as a function of magnitude between the two populations, and show that both populations experience similar evolutionary changes to the surface abundances of C and N. Finally, we calculate C+N+O abundances for each population and compare them to similar measurements made in M10; we find that in both clusters, CN-enhanced stars have a slightly enhanced C+N+O (Δ(C+N+O) ∼ 0.2 dex).

47 OTHER INSTRUMENTATION↗
DOE OSTI2021

2M17091769+3127589: A Mass-transfer Binary with an Extreme Mass Ratio

We present the orbital solution of a peculiar double-lined spectroscopic and eclipsing binary system, 2M17091769+3127589. This solution was obtained by a simultaneous fit of both APOGEE radial velocities and TESS and ASAS-SN light curves to determine masses and radii. This system consists of an M=0.256{sub -0.006}{sup +0.010} M {sub ⊙}, R=3.961{sub -0.032}{sup +0.049} R {sub ⊙} red giant and a hotter M=1.518{sub -0.031}{sup +0.057} M {sub ⊙}, R=2.608{sub -0.321}{sup +0.034} R {sub ⊙} subgiant. Modeling with the MESA evolutionary codes indicates that the system likely formed 5.26 Gyrs ago, with a M = 1.2 M {sub ⊙} primary that is now the system’s red giant and a M = 1.11 M {sub ⊙} secondary that is now a more massive subgiant. Due to Roche-lobe overflow as the primary ascends the red giant branch, the more evolved “primary” (i.e., originally the more massive star of the pair) is now only one sixth as massive as the “secondary.” Such a difference between the initial and the current mass ratio is one of the most extreme detected so far. Evolutionary modeling suggests the system is still engaged in mass transfer, at a rate of M-dot ~10{sup -9} M {sub ⊙}/yr, and it provides an example of a less evolved precursor to some of the systems that consist of white dwarfs and blue stragglers.

47 OTHER INSTRUMENTATION↗
DOE OSTI2020

COol Companions ON Ultrawide orbiTS (COCONUTS). I. A High-gravity T4 Benchmark around an Old White Dwarf and a Re-examination of the Surface-gravity Dependence of the L/T Transition

We present the first discovery from the COol Companions ON Ultrawide orbiTS (COCONUTS) program, a large-scale survey for wide-orbit planetary and substellar companions. We have discovered a comoving system COCONUTS-1, composed of a hydrogen-dominated white dwarf (PSO J058.9855+45.4184; d = 31.5 pc) and a T4 companion (PSO J058.9869+45.4296) at a 40farcs6 (1280 au) projected separation. We derive physical properties for COCONUTS-1B from (1) its near-infrared spectrum using cloudless Sonora atmospheric models, and (2) its luminosity and the white dwarf's age (${7.3}_{-1.6}^{+2.8}$ Gyr) using Sonora evolutionary models. The two methods give consistent temperatures and radii, but atmospheric models infer a lower surface gravity and therefore an unphysically young age. Assuming evolutionary model parameters (${T}_{\mathrm{eff}}={1255}_{-8}^{+6}$ K, $\mathrm{log}\,g={5.44}_{-0.03}^{+0.02}$ dex, $R={0.789}_{-0.005}^{+0.011}$ ${R}_{\mathrm{Jup}}$), we find that cloudless model atmospheres have brighter Y- and J-band fluxes than the data, suggesting that condensate clouds have not fully dispersed around 1300 K. The W2 flux (4.6 μm) of COCONUTS-1B is fainter than models, suggesting non-equilibrium mixing of CO. To investigate the gravity dependence of the L/T transition, we compile all 60 known L6-T6 benchmarks and derive a homogeneous set of temperatures, surface gravities, and masses. As is well known, young, low-gravity late-L dwarfs have significantly fainter, redder near-infrared photometry and ≈200–300 K cooler temperatures than old, high-gravity objects. Our sample now reveals such gravity dependence becomes weaker for T dwarfs, with young objects having comparable near-infrared photometry and ≈100 K cooler temperatures compared to old objects. Finally, we find that young objects have a larger amplitude J-band brightening than old objects, and also brighten at H band as they cross the L/T transition.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

The Size–Mass Relation of Post-starburst Galaxies in the Local Universe

We present a study of the size–mass relation for local post-starburst (PSB) galaxies at z ≲ 0.33 selected from the Sloan Digital Sky Survey Data Release 8. We find that PSB galaxies with stellar mass (M * ) at 10 9 M ⊙ < M * < 10 12 M ⊙ have a galaxy size smaller than or comparable to those of quiescent galaxies (QGs). After controlling redshift and stellar mass, the sizes of PSBs are ~13% smaller on average than those of QGs; such differences become larger and significant toward the low-M * end, especially at 10 9.5 M ⊙ ≲ M * ≲ 10 10.5 M ⊙ where PSBs can be on average ~19% smaller than QGs. By comparing predictions of possible PSB evolutionary pathways from cosmological simulations, we suggest that a fast quenching of star formation following a short-lived starburst event (which might be induced by a major merger) should be the dominant pathway of our PSB sample. Furthermore, by cross-matching with group catalogs, we confirm that local PSBs at M * ≲ 10 10 M ⊙ are more clustered than more massive ones. PSBs residing in groups are found to be slightly larger in galaxy size and more disk-like compared to field PSBs, which is qualitatively consistent with and thus hints at the environment-driven fast quenching pathway for group PSBs. Taken together, our results support multiple evolutionary pathways for local PSB galaxies: while massive PSBs are thought of as products of fast quenching following a major merger-induced starburst, environment-induced fast quenching should play a role in the evolution of less massive PSBs, especially at M * ≲ 10 10 M ⊙ .

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Kepler and TESS Observations of PG 1159-035

Abstract PG 1159-035 is the prototype of the PG 1159 hot (pre-)white dwarf pulsators. This important object was observed during the Kepler satellite K2 mission for 69 days in 59 s cadence mode and by the TESS satellite for 25 days in 20 s cadence mode. We present a detailed asteroseismic analysis of those data. We identify a total of 107 frequencies representing 32 ℓ = 1 modes, 27 frequencies representing 12 ℓ = 2 modes, and eight combination frequencies. The combination frequencies and the modes with very high k values represent new detections. The multiplet structure reveals an average splitting of 4.0 ± 0.4 μ Hz for ℓ = 1 and 6.8 ± 0.2 μ Hz for ℓ = 2, indicating a rotation period of 1.4 ± 0.1 days in the region of period formation. In the Fourier transform of the light curve, we find a significant peak at 8.904 ± 0.003 μ Hz suggesting a surface rotation period of 1.299 ± 0.002 days. We also present evidence that the observed periods change on timescales shorter than those predicted by current evolutionary models. Our asteroseismic analysis finds an average period spacing for ℓ = 1 of 21.28 ± 0.02 s. The ℓ = 2 modes have a mean spacing of 12.97 ± 0.4 s. We performed a detailed asteroseismic fit by comparing the observed periods with those of evolutionary models. The best-fit model has T eff = 129, 600 ± 11 100 K, M * = 0.565 ± 0.024 M ⊙ , and log g = 7.41 − 0.54 + 0.38 , within the uncertainties of the spectroscopic determinations. We argue for future improvements in the current models, e.g., on the overshooting in the He-burning stage, as the best-fit model does not predict excitation for all of the pulsations detected in PG 1159-035.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Measuring He i Stark Line Shapes in the Laboratory to Examine Differences in Photometric and Spectroscopic DB White Dwarf Masses

Abstract Accurate helium White Dwarf (DB) masses are critical for understanding the star’s evolution. DB masses derived from the spectroscopic and photometric methods are inconsistent. Photometric masses agree better with currently accepted DB evolutionary theories and are mostly consistent across a large range of surface temperatures. Spectroscopic masses rely on untested He i Stark line-shape and Van der Waals broadening predictions, show unexpected surface temperature trends, and are thus viewed as less reliable. To test this conclusion, we present in this paper detailed He i Stark line-shape measurements at conditions relevant to DB atmospheres ( T electron ≈12,000–17,000 K, n electron ≈ 10 17 cm −3 ). We use X-rays from Sandia National Laboratories’ Z -machine to create a uniform ≈120 mm long hydrogen–helium mixture plasma. Van der Waals broadening is negligible at our experimental conditions, allowing us to measure He i Stark profiles only. H β , which has been well-studied in our platform and elsewhere, serves as the n e diagnostic. We find that He i Stark broadening models used in DB analyses are accurate within errors at tested conditions. It therefore seems unlikely that line-shape models are solely responsible for the observed spectroscopic mass trends. Our results should motivate the WD community to further scrutinize the validity of other spectroscopic and photometric input parameters, like atmospheric structure assumptions and convection corrections. These parameters can significantly change the derived DB mass. Identifying potential weaknesses in any input parameters could further our understanding of DBs, help elucidate their evolutionary origins, and strengthen confidence in both spectroscopic and photometric masses.

Schaeuble, M. -A. (ORCID:0000000188695203)↗
DOE OSTI2025

Mapping the Outcomes of Stellar Evolution in the Disks of Active Galactic Nuclei

The disks of active galactic nuclei (AGNs) are expected to be populated by numerous stars, either formed in the outer regions of the disk via gravitational instability or captured from the nearby nuclear star cluster. Regardless of their formation mechanism, these stars experience altered evolutionary paths, mostly shaped by the accretion of dense disk material. In this study, through the comparison of different timescales, we chart the evolutionary outcomes of these AGN stars as a function of disk radius and across a range of supermassive black hole masses, spanning from 10 6 to 10 9 M ⊙ , for two popular AGN disk models. We find that in the outer regions of the disk, stars evolve similarly to those in the interstellar medium, but in the inner and denser regions, accretion quickly turns low-mass stars into massive stars, and their fate depends on just how quickly they accrete. If accretion occurs at a faster rate than nuclear burning, they can reach a quasi-steady "immortal" state. If stars accrete faster than they can thermally adjust, runaway accretion occurs, potentially preventing a quasi-steady state and altering the disk structure. During the AGN lifetime, in the regions of the disk that produce massive stars, supernovae (SNe) and gamma-ray bursts (GRBs) may occur within the disk over a wide range of optical depths and ambient densities. Subsequently, in the final phase of the AGN, as the disk becomes depleted, formerly immortal stars will be unable to replenish their fuel, leading to additional SNe and GRBs.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

Checking It Twice: Using [C/N] Masses and Asteroseismic Masses as a Diagnostic of Mass Loss and Transfer on the Red Giant Branch

Red giants experience significant mass loss, but the mechanism is poorly understood. The surface [C/N] of red giants is correlated with birth mass but not directly impacted by mass loss. Exploiting this, we compare asteroseismic masses of red giants with the same [C/N] but different evolutionary states. We find bulk differences between stars at the beginning of the red giant branch (RGB) and in the subsequent evolutionary phase, the red clump, providing a direct constraint on the strength of net RGB mass loss in field stars. We find that net mass loss decreases with metallicity and mass, matching recent studies for field giants but contradicting expectations from the widely used Reimers’s mass-loss formula. We propose a mass- and metallicity-dependent Reimers’s η calibration that reproduces the empirical trends that we see. In addition, we identify 200 stars (3.12% of our sample) that are clear outliers from their population in these birth mass bins, which we believe are likely candidates for mass transfer events. These stars do not show any obvious discrepancies in abundances or binary properties from their counterparts. This population should be accounted for in Galactic archeological studies. Further follow-up is required to quantify their occurrence rate and origin.

Roberts, John D. [The Ohio State Univ., Columbus, ↗
DOE OSTI2022

Dynamical Unification of Tidal Disruption Events

The ~100 tidal disruption events (TDEs) observed so far exhibit a wide range of emission properties both at peak and over their lifetimes. Some TDEs radiate predominantly at X-ray energies, while others radiate chiefly at UV and optical wavelengths. While the peak luminosities across TDEs show distinct properties, the evolutionary behavior can also vary between TDEs with similar peak emission properties. In particular, for optical TDEs, while their UV and optical emissions decline somewhat following the fallback pattern, some events can greatly rebrighten in X-rays at late time. In this Letter, we conduct three-dimensional general relativistic radiation magnetohydrodynamics simulations of TDE accretion disks at varying accretion rates in the regime of super-Eddington accretion. We make use of Monte Carlo radiative transfer simulations to calculate the reprocessed spectra at various inclinations and at different evolutionary stages. We confirm the unified model proposed by Dai et al., which predicts that the observed emission largely depends on the viewing angle of the observer with respect to the disk orientation. Furthermore, we find that disks with higher accretion rates have elevated wind and disk densities, which increases the reprocessing of the high-energy radiation and thus generally augments the optical-to-X-ray flux ratio along a particular viewing angle. This implies that at later times, as the accretion level declines, we expect that more X-rays will leak out along intermediate viewing angles. Such dynamical model for TDEs can provide a natural explanation for the diversity in the emission properties observed in TDEs at peak and along their temporal evolution.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2026

Telomere-to-telomere assemblies of chromosome 10 reveal complex adaptive variation of 3-ketoacyl-CoA-synthases in Populus trichocarpa likely driven by Helitrons

The model woody plant Populus trichocarpa displays an atypical alkene-diverse wax cuticle likely driven by copy number variation (CNV) of 3-ketoacyl-CoA synthases ( KCS ), which has been difficult to confirm with short-read assemblies. Long-read sequencing enables the development of telomere-to-telomere resources to detect cryptic variation, including CNVs, which are currently missed. Integrating this information can improve genomic prediction for breeding and provide insights into the evolutionary basis of important traits. Our analysis of 78 long-read haplotypes from chromosome 10 identified more than twice as many KCS genes as previously reported, and numerous intragenic non-synonymous substitutions. Random Forest predictive models highlighted the importance of Potri.010G079500 in producing very long chain alkenes; however, its absence did not predict previously reported alkene-deficient phenotypes. Instead, alkene levels are best predicted by the combinations of KCS copies. Additionally, amino acid substitutions clustered around ligand and donor binding pockets, suggesting they contribute to differing wax cuticle composition. Finally, each KCS gene and copy was linked to a Helitron transposon. A phylogenetic analysis suggests Helitrons are the evolutionary mechanism for generating KCS tandem arrays. Long-read generated telomere-to-telomere assemblies of P. trichocarpa chromosome 10 revealed large-effect loci critical to genetic studies that are unattainable from short-reads. This new resource produced novel insights into genome structure and function, and a novel mechanism for generating tandem gene duplication. Our results highlight that, given current challenges in annotation and assembly, detailed and focused long-read sequences are key to interpreting complex genomic regions that contain tandem copy number variants.

09 BIOMASS FUELS↗
DOE OSTI2021

Price equation captures the role of drug interactions and collateral effects in the evolution of multidrug resistance

Bacterial adaptation to antibiotic combinations depends on the joint inhibitory effects of the two drugs (drug interaction [DI]) and how resistance to one drug impacts resistance to the other (collateral effects [CE]). Here we model these evolutionary dynamics on two-dimensional phenotype spaces that leverage scaling relations between the drug-response surfaces of drug-sensitive (ancestral) and drug-resistant (mutant) populations. We show that evolved resistance to the component drugs – and in turn, the adaptation of growth rate – is governed by a Price equation whose covariance terms encode geometric features of both the two-drug-response surface (DI) in ancestral cells and the correlations between resistance levels to those drugs (CE). Within this framework, mean evolutionary trajectories reduce to a type of weighted gradient dynamics, with the drug interaction dictating the shape of the underlying landscape and the collateral effects constraining the motion on those landscapes. We also demonstrate how constraints on available mutational pathways can be incorporated into the framework, adding a third key driver of evolution. Our results clarify the complex relationship between drug interactions and collateral effects in multidrug environments and illustrate how specific dosage combinations can shift the weighting of these two effects, leading to different and temporally explicit selective outcomes.

Gjini, Erida↗
DOE OSTI2023

Budding yeasts in the subphylum Saccharomycotina Genome sequencing and assembly

Eukaryotic life depends on the functional elements encoded by both the nuclear genome and organellar genomes, such as those contained within the mitochondria. The content, size, and structure of the mitochondrial genome varies across organisms with potentially large implications for phenotypic variance and resulting evolutionary trajectories. Among yeasts in the subphylum Saccharomycotina, extensive differences have been observed in various species relative to the model yeast Saccharomyces cerevisiae, but mitochondrial genome sampling across many groups has been scarce, even as hundreds of nuclear genomes have become available. By extracting mitochondrial reads from existing short-read genome sequence datasets, we have greatly expanded both the number of available genomes and the coverage across sparsely sampled clades. Comparison of 353 yeast mitochondrial genomes revealed that, while size and GC content were fairly consistent across species, those in the genera Metschnikowia and Saccharomyces trended larger, while several species in the order Saccharomycetales exhibited lower GC content. Extreme examples for both size and GC content were scattered throughout the subphylum. All mitochondrial genomes shared a core set of protein-coding genes for Complexes III, IV, and V, but they varied in the presence or absence of mitochondrially-encoded canonical Complex I genes. We traced the loss of Complex I genes to a major event in the ancestor of the orders Saccharomycetales and Saccharomycodales, but we also observed several independent losses in the orders Phaffomycetales, Pichiales, and Dipodascales. In contrast to prior hypotheses based on smaller-scale datasets, comparison of evolutionary rates in protein-coding genes showed no bias towards elevated rates among aerobically fermenting (Crabtree/Warburg-positive) yeasts. Mitochondrial introns were widely distributed, but highly enriched in some groups. The majority of mitochondrial introns were poorly conserved within groups, but several were shared within groups, between groups, and even across taxonomic orders, which is consistent with horizontal gene transfer, likely involving homing endonucleases acting as selfish elements. As the number of available fungal nuclear genomes continues to expand, the methods described here to retrieve mitochondrial genome sequences from these datasets will prove invaluable to ensuring that studies of fungal mitochondrial genomes keep pace with their nuclear counterparts.

diversity↗
DOE OSTI2024

Fine-scale contemporary recombination variation and its fitness consequences in adaptively diverging stickleback fish

Despite deep evolutionary conservation, recombination rates vary greatly across the genome and among individuals, sexes and populations. Yet the impact of this variation on adaptively diverging populations is not well understood. Here we characterized fine-scale recombination landscapes in an adaptively divergent pair of marine and freshwater populations of threespine stickleback from River Tyne, Scotland. Through whole-genome sequencing of large nuclear families, we identified the genomic locations of almost 50,000 crossovers and built recombination maps for marine, freshwater and hybrid individuals at a resolution of 3.8 kb. We used these maps to quantify the factors driving variation in recombination rates. We found strong heterochiasmy between sexes but also differences in recombination rates among ecotypes. Hybrids showed evidence of significant recombination suppression in overall map length and in individual loci. Recombination rates were lower not only within individual marine–freshwater-adaptive loci, but also between loci on the same chromosome, suggesting selection on linked gene ‘cassettes’. Through temporal sampling along a natural hybrid zone, we found that recombinants showed traits associated with reduced fitness. Our results support predictions that divergence in cis-acting recombination modifiers, whose functions are disrupted in hybrids, may play an important role in maintaining differences among adaptively diverging populations.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Can fractal dimensions objectivize gastropod shell morphometrics? A case study from Lake Lugu (SW China)

1. Morphometrics are fundamental for the analysis of size and shape in fossils, particularly because soft parts or DNA are rarely preserved and hard parts such as shells are commonly the only source of information. Geometric morphometrics, that is, landmark analysis, is well established for the description of shape but it exhibits a couple of shortcomings resulting from subjective choices during landmarking (number and position of landmarks) and from difficulties in resolving shape at the level of micro-sculpture. 2. With the aid of high-resolution 3D scanning technology and analyses of fractal dimensions, we test whether such shortcomings of linear and landmark morphometrics can be overcome. As a model group, we selected a clade of modern viviparid gastropods from Lake Lugu, with shells that show a high degree of sculptural variation. Linear and landmark analyses were applied to the same shells in order to establish the fractal dimensions. 3. The genetic diversity of the gastropod clade was assessed. The genetic results suggest that the gastropod clade represents a single species. The results of all morphometric methods applied are in line with the genetic results, which is that no specific morphotype could be delimited. Apart from this overall agreement, landmark and fractal dimension analyses do not correspond to each other but represent data sets with different information. Generally, the fractal dimension values quantify the roughness of the shell surface, the resolution of the 3D scans determining the level. In our approach, we captured the micro-sculpture but not the first-order sculptural elements, which explains that fractal dimension and landmark data are not in phase. 4. We can show that analyzing fractal dimensions of gastropod shells opens a window to more detailed information that can be considered in evolutionary and ecological contexts. We propose that using low-resolution 3D scans may successfully substitute landmark analyses because it overcomes the subjective landmarking. Analyses of 3D scans with higher resolution than used in this study will provide surface roughness information at the mineralogical level. We suggest that fractal dimension analyses of a combination of differently resolved 3D models will significantly improve the quality of shell morphometrics.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Soft and transferable pseudopotentials from multi-objective optimization

Ab initio pseudopotentials are a linchpin of modern molecular and condensed matter electronic structure calculations. In this work, we employ multi-objective optimization to maximize pseudopotential softness while maintaining high accuracy and transferability. To accomplish this, we develop a formulation in which softness and accuracy are simultaneously maximized, with accuracy determined by the ability to reproduce all-electron energy differences between Bravais lattice structures, whereupon the resulting Pareto frontier is scanned for the softest pseudopotential that provides the desired accuracy in established transferability tests. We employ an evolutionary algorithm to solve the multi-objective optimization problem and apply it to generate a comprehensive table of optimized norm-conserving Vanderbilt (ONCV) pseudopotentials (https://github.com/SPARC-X/SPMS-psps). Here, we show that the resulting table is softer than existing tables of comparable accuracy, while more accurate than tables of comparable softness. The potentials thus afford the possibility to speed up calculations in a broad range of applications areas while maintaining high accuracy.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2024

Combinatorial transcription factor binding encodes cis -regulatory wiring of mouse forebrain GABAergic neurogenesis

Transcription factors (TFs) bind combinatorially to cis-regulatory elements, orchestrating transcriptional programs. Although studies of chromatin state and chromosomal interactions have demonstrated dynamic neurodevelopmental cis-regulatory landscapes, parallel understanding of TF interactions lags. To elucidate combinatorial TF binding driving mouse basal ganglia development, we integrated chromatin immunoprecipitation sequencing (ChIP-seq) for twelve TFs, H3K4me3-associated enhancer-promoter interactions, chromatin and gene expression data, and functional enhancer assays. We identified sets of putative regulatory elements with shared TF binding (TF-pRE modules) that orchestrate distinct processes of GABAergic neurogenesis and suppress other cell fates. The majority of pREs were bound by one or two TFs; however, a small proportion were extensively bound. These sequences had exceptional evolutionary conservation and motif density, complex chromosomal interactions, and activity as in vivo enhancers. Our results provide insights into the combinatorial TF-pRE interactions that activate and repress expression programs during telencephalon neurogenesis and demonstrate the value of TF binding toward modeling developmental transcriptional wiring.

59 BASIC BIOLOGICAL SCIENCES↗