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At least 343 records · Page 19

Numerical Behaviour of a Smooth Local Correlation-based Transition Model in a Newton-Krylov Flow Solver

The numerical behaviour of transport-equation-based transition models, including both iterative and grid convergence, is influenced by the source terms. Transition models contain source terms that are large and highly nonlinear, and can be destabilizing in a strong implicit solver. Linearization strategies with varying levels of coupling are evaluated in conjunction with a source-term time step restriction to determine best-practices for solving the SA-sLM2015smooth local correlation-based transition model in an implicit Newton-Krylov flow solver. Achieving deep iterative convergence facilitates a detailed investigation of the grid convergence of these free-transition simulations, which are evaluated relative to fully-turbulent simulations performed using the Spalart-Allmaras turbulence model. Simulations of the NLF0416 general aviation airfoil, VA-2 supercritical airfoil, and NASA CRM-NLF wing-body geometry are performed over a range of grid levels. The results demonstrate that both a fully-coupled linearization strategy and a source-term time step restriction improve nonlinear convergence as the complexity of the free-transition simulations increases. In general, additional grid resolution is required for free-transition simulations relative to fully-turbulent simulations in order to achieve a similar level of accuracy, with the grid convergence of free-transition simulations sensitive to the streamwise grid spacings in the transition regions.

AATT↗

Scalable smoothing strategies for a geometric multigrid method for the immersed boundary equations

The immersed boundary (IB) method is a widely used approach to simulating fluid-structure interaction (FSI). Although explicit versions of the IB method can suffer from severe time step size restrictions, these methods remain popular because of their simplicity and generality. In prior work (Guy et al., Adv Comput Math, 2015), some of us developed a geometric multigrid preconditioner for a stable semi-implicit IB method under Stokes flow conditions; however, this solver methodology used a Vanka-type smoother that presented limited opportunities for parallelization. This work extends this Stokes-IB solver methodology by developing smoothing techniques that are suitable for parallel implementation. Specifically, we demonstrate that an additive version of the Vanka smoother can yield an effective multigrid preconditioner for the Stokes-IB equations, and we introduce an efficient Schur complement-based smoother that is also shown to be effective for the Stokes-IB equations. We investigate the performance of these solvers for a broad range of material stiffnesses, both for Stokes flows and flows at nonzero Reynolds numbers, and for thick and thin structural models. We show here that linear solver performance degrades with increasing Reynolds number and material stiffness, especially for thin interface cases. Nonetheless, the proposed approaches promise to yield effective solution algorithms, especially at lower Reynolds numbers and at modest-to-high elastic stiffnesses.

97 MATHEMATICS AND COMPUTING↗

Preconditioned steepest descent methods for some nonlinear elliptic equations involving p-Laplacian terms

We describe and analyze preconditioned steepest descent (PSD) solvers for fourth and sixth-order nonlinear elliptic equations that include p-Laplacian terms on periodic domains in 2 and 3 dimensions. The highest and lowest order terms of the equations are constant-coefficient, positive linear operators, which suggests a natural preconditioning strategy. Such nonlinear elliptic equations often arise from time discretization of parabolic equations that model various biological and physical phenomena, in particular, liquid crystals, thin film epitaxial growth and phase transformations. The analyses of the schemes involve the characterization of the strictly convex energies associated with the equations. We first give a general framework for PSD in Hilbert spaces. Based on certain reasonable assumptions of the linear pre-conditioner, a geometric convergence rate is shown for the nonlinear PSD iteration. We then apply the general theory to the fourth and sixth-order problems of interest, making use of Sobolev embedding and regularity results to confirm the appropriateness of our pre-conditioners for the regularized p-Lapacian problems. Our results include a sharper theoretical convergence result for p-Laplacian systems compared to what may be found in existing works. We demonstrate rigorously how to apply the theory in the finite dimensional setting using finite difference discretization methods. Numerical simulations for some important physical application problems – including thin film epitaxy with slope selection and the square phase field crystal model – are carried out to verify the efficiency of the scheme.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

THE ANGULAR DISTRIBUTION OF Ly{alpha} RESONANT PHOTONS EMERGING FROM AN OPTICALLY THICK MEDIUM

We investigate the angular distribution of Ly{alpha} photons scattering or emerging from an optically thick medium. Since the evolution of specific intensity I in frequency space and angular space are coupled with each other, we first develop the WENO numerical solver to find the time-dependent solutions of the integro-differential equation of I in frequency and angular space simultaneously. We first show that the solutions with the Eddington approximation, which assume that I is linearly dependent on the angular variable {mu}, yield similar frequency profiles of the photon flux as those without the Eddington approximation. However, the solutions of the {mu} distribution evolution are significantly different from those given by the Eddington approximation. First, the angular distribution of I is found to be substantially dependent on the frequency of the photons. For photons with the resonant frequency {nu}{sub 0}, I contains only a linear term of {mu}. For photons with frequencies at the double peaks of the flux, the {mu}-distribution is highly anisotropic; most photons are emitted radially forward. Moreover, either at {nu}{sub 0} or at the double peaks, the {mu} distributions actually are independent of the initial {mu} distribution of photons of the source. This is because the photons with frequencies either at {nu}{sub 0} or the double peaks undergo the process of forgetting their initial conditions due to resonant scattering. We also show that the optically thick medium is a collimator of photons at the double peaks. Photons from the double peaks form a forward beam with a very small opening angle.

79 ASTRONOMY AND ASTROPHYSICS↗

Fast multiscale contrast independent preconditioners for linear elastic topology optimization problems

The goal of this work is to present a fast and viable approach for the numerical solution of the high-contrast state problems arising in topology optimization. The optimization process is iterative, and the gradients are obtained by an adjoint analysis, which requires the numerical solution of large high-contrast linear elastic problems with features spanning several length scales. The size of the discretized problems forces the utilization of iterative linear solvers with solution time dependent on the quality of the preconditioner. The lack of clear separation between the scales, as well as the high-contrast, imposes severe challenges on the standard preconditioning techniques. Thus, here we propose new methods for the high-contrast elasticity equation with performance independent of the high-contrast and the multi-scale structure of the elasticity problem. The solvers are based on two-levels domain decomposition techniques with a carefully constructed coarse level to deal with the high-contrast and multi-scale nature of the problem. The construction utilizes spectral equivalence between scalar diffusion and each displacement block of the elasticity problems and, in contrast to previous solutions proposed in the literature, is able to select the appropriate dimension of the coarse space automatically. The new methods inherit the advantages of domain decomposition techniques, such as easy parallelization and scalability. Finally, the presented numerical experiments demonstrate the excellent performance of the proposed methods.

97 MATHEMATICS AND COMPUTING↗

Implicit filtered P{sub N} for high-energy density thermal radiation transport using discontinuous Galerkin finite elements

In this work, we provide a fully-implicit implementation of the time-dependent, filtered spherical harmonics (FP{sub N}) equations for non-linear, thermal radiative transfer. We investigate local filtering strategies and analyze the effect of the filter on the conditioning of the system, showing in particular that the filter improves the convergence properties of the iterative solver. We also investigate numerically the rigorous error estimates derived in the linear setting, to determine whether they hold also for the non-linear case. Finally, we simulate a standard test problem on an unstructured mesh and make comparisons with implicit Monte Carlo (IMC) calculations.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Scaling Structured Multigrid to 500K+ Cores Through Coarse-Grid Redistribution

The effcient solution of sparse, linear systems resulting from the discretization of partial differential equations is crucial to the performance of many physics-based simulations. The algorithmic optimality of multilevel approaches for common discretizations makes them a good candidate for an efficient parallel solver. Yet, modern architectures for high-performance computing systems continue to challenge the parallel scalability of multilevel solvers. While algebraic multigrid methods are robust for solving a variety of problems, the increasing importance of data locality and cost of data movement in modern architectures motivates the need to carefully exploit structure in the problem. Robust logically structured variational multigrid methods, such as Black Box Multigrid (BoxMG), maintain structure throughout the multigrid hierarchy. This avoids indirection and increased coarse- grid communication costs typical in parallel algebraic multigrid. Nevertheless, the parallel scalability of structured multigrid is challenged by coarse-grid problems where the overhead in communication dominates computation. In this paper, an algorithm is introduced for redistributing coarse-grid problems through incremental agglomeration. Guided by a predictive performance model, this algorithm provides robust redistribution decisions for structured multilevel solvers. A two-dimensional diffusion problem is used to demonstrate the significant gain in performance of this algorithm over the previous approach that used agglomeration to one processor. In addition, the parallel scalability of this approach

97 MATHEMATICS AND COMPUTING↗

Solution of the two-dimensional Navier-Stokes equations using sparse matrix solvers

The use of direct sparse matrix solvers in the solution of the Navier-Stokes equations is investigated. The Yale Sparse Matrix Package and its implementation in the solution algorithm is described. The streamfunction-vorticity form of the Navier-Stokes equations are discretized and linearized and the resulting system of equations are solved using this package. Several viscous flow problems are investigated, including flow in a cavity and flow around a NACA0012 airfoil. Massively separated flow around a sine wave airfoil is investigated and high Reynolds number solutions are obtained. A solution of the unsteady flow around a Joukowski airfoil at high angle of attack is presented.

Bender, Erich E.↗

Adaptively Refined Euler and Navier-Stokes Solutions with a Cartesian-Cell Based Scheme

A Cartesian-cell based scheme with adaptive mesh refinement for solving the Euler and Navier-Stokes equations in two dimensions has been developed and tested. Grids about geometrically complicated bodies were generated automatically, by recursive subdivision of a single Cartesian cell encompassing the entire flow domain. Where the resulting cells intersect bodies, N-sided 'cut' cells were created using polygon-clipping algorithms. The grid was stored in a binary-tree data structure which provided a natural means of obtaining cell-to-cell connectivity and of carrying out solution-adaptive mesh refinement. The Euler and Navier-Stokes equations were solved on the resulting grids using an upwind, finite-volume formulation. The inviscid fluxes were found in an upwinded manner using a linear reconstruction of the cell primitives, providing the input states to an approximate Riemann solver. The viscous fluxes were formed using a Green-Gauss type of reconstruction upon a co-volume surrounding the cell interface. Data at the vertices of this co-volume were found in a linearly K-exact manner, which ensured linear K-exactness of the gradients. Adaptively-refined solutions for the inviscid flow about a four-element airfoil (test case 3) were compared to theory. Laminar, adaptively-refined solutions were compared to accepted computational, experimental and theoretical results.

Coirier, William J.↗

Multigrid approaches to non-linear diffusion problems on unstructured meshes

The efficiency of three multigrid methods for solving highly non-linear diffusion problems on two-dimensional unstructured meshes is examined. The three multigrid methods differ mainly in the manner in which the nonlinearities of the governing equations are handled. These comprise a non-linear full approximation storage (FAS) multigrid method which is used to solve the non-linear equations directly, a linear multigrid method which is used to solve the linear system arising from a Newton linearization of the non-linear system, and a hybrid scheme which is based on a non-linear FAS multigrid scheme, but employs a linear solver on each level as a smoother. Results indicate that all methods are equally effective at converging the non-linear residual in a given number of grid sweeps, but that the linear solver is more efficient in cpu time due to the lower cost of linear versus non-linear grid sweeps.

Mavriplis, Dimitri J.↗

Multiscale two-stage solver for Biot’s poroelasticity equations in subsurface media

In this paper, we propose a two-stage preconditioner for accelerating the iterative solution by a Krylov subspace method of Biot’s poroelasticity equations based on a displacement-pressure formulation. The spatial discretization combines a finite element method for mechanics and a finite volume approach for flow. The fully implicit backward Euler scheme is used for time integration. The result is a 2 × 2 block linear system for each timestep. The preconditioning operator is obtained by applying a two-stage scheme. The first stage is a global preconditioner that employs multiscale basis functions to construct coarse-scale coupled systems using a Galerkin projection. This global stage is effective at damping low-frequency error modes associated with long-range coupling of the unknowns. The second stage is a local block-triangular smoothing preconditioner, which is aimed at high-frequency error modes associated with short-range coupling of the variables. Lastly, various numerical experiments are used to demonstrate the robustness of the proposed solver.

58 GEOSCIENCES↗

An O(Nm(sup 2)) Plane Solver for the Compressible Navier-Stokes Equations

A hierarchical multigrid algorithm for efficient steady solutions to the two-dimensional compressible Navier-Stokes equations is developed and demonstrated. The algorithm applies multigrid in two ways: a Full Approximation Scheme (FAS) for a nonlinear residual equation and a Correction Scheme (CS) for a linearized defect correction implicit equation. Multigrid analyses which include the effect of boundary conditions in one direction are used to estimate the convergence rate of the algorithm for a model convection equation. Three alternating-line- implicit algorithms are compared in terms of efficiency. The analyses indicate that full multigrid efficiency is not attained in the general case; the number of cycles to attain convergence is dependent on the mesh density for high-frequency cross-stream variations. However, the dependence is reasonably small and fast convergence is eventually attained for any given frequency with either the FAS or the CS scheme alone. The paper summarizes numerical computations for which convergence has been attained to within truncation error in a few multigrid cycles for both inviscid and viscous ow simulations on highly stretched meshes.

Thomas, J. L.↗

Spectral solver for multi-scale plasma physics simulations with dynamically adaptive number of moments

A spectral method for kinetic plasma simulations based on the expansion of the velocity distribution function in a variable number of Hermite polynomials is presented. The method is based on a set of non-linear equations that is solved to determine the coefficients of the Hermite expansion satisfying the Vlasov and Poisson equations. In this paper, we first show that this technique combines the fluid and kinetic approaches into one framework. Second, we present an adaptive strategy to increase and decrease the number of Hermite functions dynamically during the simulation. The technique is applied to the Landau damping and two-stream instability test problems. Performance results show 21% and 47% saving of total simulation time in the Landau and two-stream instability test cases, respectively.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

A meshless stochastic method for Poisson–Nernst–Planck equations

A plethora of biological, physical, and chemical phenomena involve transport of charged particles (ions). Its continuum-scale description relies on the Poisson–Nernst–Planck (PNP) system, which encapsulates the conservation of mass and charge. The numerical solution of these coupled partial differential equations is challenging and suffers from both the curse of dimensionality and difficulty in efficiently parallelizing. We present a novel particle-based framework to solve the full PNP system by simulating a drift–diffusion process with time- and space-varying drift. We leverage Green’s functions, kernel-independent fast multipole methods, and kernel density estimation to solve the PNP system in a meshless manner, capable of handling discontinuous initial states. The method is embarrassingly parallel, and the computational cost scales linearly with the number of particles and dimension. We use a series of numerical experiments to demonstrate both the method’s convergence with respect to the number of particles and computational cost vis-à-vis a traditional partial differential equation solver.

Chemistry↗

Linear Microbunching Gain Estimation Including CSR, LSC And Linac Geometric Impedances In Recirculation Arcs

It is known that microbunching instability (MBI) has been one of the most challenging issues with the design of magnetic compressor chicanes for X-ray FEL or linear colliders, as well as the transport lines for recirculating or energy recovery linacs. To more accurately quantify MBI in a single-pass system and for more complete analyses, we extend our previously developed linear Vlasov solver [1] to incorporate more relevant impedance models into the code, including transient and steady-state coherent synchrotron radiation (CSR), the longitudinal space charge (LSC), and the linac geometric impedance models. Then we self-consistently solve the linearized Vlasov equation for the gain amplification factor. With application of this code to two specially designed recirculation arcs [2], the resultant gain functions and spectra are presented and some results are compared with particle tracking simulation by ELEGANT. We also discuss some underlying physics with inclusion of these collective effects. It is anticipated this more complete analysis can further improve the understanding of the MBI mechanisms and shed light on how to suppress or compensate MBI effects in lattice designs. [1] C. -Y. Tsai et al., Theoretical investigation of coherent synchrotron radiation induced microbunching instability in transport and recirculation arcs, Proceedings of FEL 14, available at http://arxiv.org/abs/1408.5542 [2] D. Douglas et al., Control of Coherent Synchrotron Radiation and Micro-Bunching Effects During Transport of High Brightness Electron Beams, JLAB-ACP-14-1751, available at http://arxiv.org/abs/1403.2318 Authored by Jefferson Science Associates, LLC under U.S. DOE Contract No. DE-AC05-06OR23177.

Tsai, C. -Y.↗

Enabling New Flexibility in the SUNDIALS Suite of Nonlinear and Differential/Algebraic Equation Solvers

In recent years, the SUite of Nonlinear and DIfferential/ALgebraic equation Solvers (SUNDIALS) has been redesigned to better enable the use of application-specific and third-party algebraic solvers and data structures. Throughout this work, we have adhered to specific guiding principles that minimized the impact to current users while providing maximum flexibility for later evolution of solvers and data structures. The redesign was done through the addition of new linear and nonlinear solvers classes, enhancements to the vector class, and the creation of modern Fortran interfaces. The vast majority of this work has been performed “behind-the-scenes,” with minimal changes to the user interface and no reduction in solver capabilities or performance. These changes allow SUNDIALS users to more easily utilize external solver libraries and create highly customized solvers, enabling greater flexibility on extreme-scale, heterogeneous computational architectures.

97 MATHEMATICS AND COMPUTING↗

Solution algorithms for the two-dimensional Euler equations on unstructured meshes

The objective of the study was to analyze implicit techniques employed in structured grid algorithms for solving two-dimensional Euler equations and extend them to unstructured solvers in order to accelerate convergence rates. A comparison is made between nine different algorithms for both first-order and second-order accurate solutions. Higher-order accuracy is achieved by using multidimensional monotone linear reconstruction procedures. The discussion is illustrated by results for flow over a transonic circular arc.

Whitaker, D. L.↗