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At least 343 records · Page 19

Correlations between Texture Profile Analysis and Sensory Evaluation of Cured Largemouth Bass Meat (Micropterus salmoides)

Texture is an important factor in evaluating the quality of aquatic products. To evaluate the texture properties of cured large mouth bass, edible sodium chloride (0, 1.0, 2.0, and 3.0%) was smeared to the bass meat. Texture profile analysis (TPA) and sensory evaluation were performed to evaluate the quality of the cured samples, and the correlations of the indexes in the two methods were analyzed. Two principal components were obtained from the TPA indexes and sensory evaluation indexes, and the cumulative variance contribution rates were 73.87% and 72.99%, respectively. Results from the principal component analysis showed that the main indicators that affected the TPA were gumminess and springiness, while those that affected sensory evaluation were chewiness and adhesiveness. The TPA index and sensory evaluation could be effectively improved when the sodium chloride added to the bass meat was 1%. In the correlation analysis, sensory springiness was negatively correlated with TPA hardness ( P < 0.05 , r = −0.553) but positively correlated with TPA chewiness ( P < 0.05 , r = 0.596). After stepwise regression analysis, the prediction equation between the sensory springiness and TPA hardness was obtained as SSp=5.770−0.002Ha. These results provide a basis for predicting the quality of large mouth bass cured products.

Li, Meijin↗

A panel analysis of groundwater use in California

We report groundwater is a relevant source of drinking and agricultural water in many regions of the world, but many aquifers have been unsustainably over-drafted and polluted. This has significant environmental, health, and economic implications. We rely on panel analysis, with small-sample corrections for cluster-robust variance estimation and hypothesis testing, to investigate the dynamics of groundwater extraction. We focus on California, yet our approach could be helpful to analyze the dynamics of groundwater extraction in other groundwater-reliant regions of the world. In California, over-reliance on groundwater has led to significant overdraft, affecting long-term water supply reliability and groundwater pumping costs. It further caused subsidence and infrastructure damage, harmed groundwater-dependent ecosystems, and threatened the sustainability of groundwater resources in the state. We use panel data of the 56 California Water Plan planning areas over the 1998–2015 period. We concentrate on agricultural and urban water use and the major water projects in the state, to provide a better understanding of the relationships between groundwater extraction and water use and supply. Results suggest that reducing agricultural water in Central California and urban water in Southern California could reduce groundwater extraction in these regions by approximately the same amount of the reduced water. Other opportunities to reduce the stress on the groundwater resources in the state are available for other regions, yet with lower benefits. Results also suggest that a decrease in deliveries from the Central Valley Project to the southern part of the Central Valley would increase groundwater extraction by approximately the same proportion. Changes in deliveries from the major water projects in the state, as well as from other sources of surface water, would also have some, yet lower impacts on groundwater extraction in the Central and Southern California.

54 ENVIRONMENTAL SCIENCES↗

Characterization of the secondary flow in hexagonal ducts

In this work we report the results of DNSs and LESs of the turbulent flow through hexagonal ducts at friction Reynolds numbers based on centerplane wall shear and duct half-height Re τ,c ≃ 180, 360, and 550. The evolution of the Fanning friction factor f with Re is in very good agreement with experimental measurements. A significant disagreement between the DNS and previous RANS simulations was found in the prediction of the in-plane velocity, and is explained through the inability of the RANS model to properly reproduce the secondary flow present in the hexagon. The kinetic energy of the secondary flow integrated over the cross-sectional area < K > yz decreases with Re in the hexagon, whereas it remains constant with Re in square ducts at comparable Reynolds numbers. Close connection between the values of Reynolds stress uw¯ on the horizontal wall close to the corner and the interaction of bursting events between the horizontal and inclined walls is found. This interaction leads to the formation of the secondary flow, and is less frequent in the hexagon as Re increases due to the 120° aperture of its vertex, whereas in the square duct the 90° corner leads to the same level of interaction with increasing Re . Analysis of turbulence statistics at the centerplane and the azimuthal variance of the mean flow and the fluctuations shows a close connection between hexagonal ducts and pipe flows, since the hexagon exhibits near-axisymmetric conditions up to a distance of around 0.15 D H measured from its center. Spanwise distributions of wall-shear stress show that in square ducts the 90° corner sets the location of a high-speed streak at a distance z + v ≃50 from it, whereas in hexagons the 120° aperture leads to a shorter distance of z + v ≃38. Finally, at these locations the root mean square of the wall-shear stresses exhibits an inflection point, which further shows the connections between the near-wall structures and the large-scale motions in the outer flow.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Molecular counting by photobleaching in protein complexes with many subunits: best practices and application to the cellulose synthesis complex

The constituents of large, multisubunit protein complexes dictate their functions in cells, but determining their precise molecular makeup in vivo is challenging. One example of such a complex is the cellulose synthesis complex (CSC), which in plants synthesizes cellulose, the most abundant biopolymer on Earth. In growing plant cells, CSCs exist in the plasma membrane as six-lobed rosettes that contain at least three different cellulose synthase (CESA) isoforms, but the number and stoichiometry of CESAs in each CSC are unknown. To begin to address this question, we performed quantitative photobleaching of GFP-tagged AtCESA3-containing particles in living Arabidopsis thaliana cells using variable-angle epifluorescence microscopy and developed a set of information-based step detection procedures to estimate the number of GFP molecules in each particle. The step detection algorithms account for changes in signal variance due to changing numbers of fluorophores, and the subsequent analysis avoids common problems associated with fitting multiple Gaussian functions to binned histogram data. The analysis indicates that at least 10 GFP-AtCESA3 molecules can exist in each particle. In conclusion, these procedures can be applied to photobleaching data for any protein complex with large numbers of fluorescently tagged subunits, providing a new analytical tool with which to probe complex composition and stoichiometry.

09 BIOMASS FUELS↗

Quantifying and Qualifying Alloys Based on Level of Homogenization: A U-10Mo Alloy Case Study

Homogenization heat treatment is performed to attain uniformity in microstructure which is helpful to achieve the desired workability and microstructure in final products and, eventually, to gain predictive and consistent performance. Fabrication of low-enriched uranium alloys with 10 wt% molybdenum (U-10Mo) fuel plates involves multiple thermomechanical processing steps. It is well known that the molybdenum homogeneity in the final formed product affects the performance in the nuclear reactor. Here, to ensure uniform homogenization, a statistical method is proposed to quantify and characterize the molybdenum concentration variation in U-10Mo fuel plates by analyzing the molybdenum concentration measurement data from scanning electron microscopy energy dispersive spectroscopy line-scan. Statistical tolerance intervals (TI) are employed to determine the qualification of the U-10Mo fuel plate. We formulate an argument for the minimum number of independent samples to define fuel plate qualification if no molybdenum measurement data are available in advance and demonstrate that the given TI requirements can be equivalently reduced to a sample variance criterion in this application. The outcome of the statistical analysis can be used to optimize casting design and eventually increase productivity and reduce fabrication costs. The statistical strategy developed in this paper can be implemented for other applications especially in the field of material manufacturing to assess qualification requirements and monitor and improve the process design.

36 MATERIALS SCIENCE↗

Background based Gaussian mixture model lesion segmentation in PET

Purpose: Quantitative {sup 18}F-fluorodeoxyglucose positron emission tomography is limited by the uncertainty in lesion delineation due to poor SNR, low resolution, and partial volume effects, subsequently impacting oncological assessment, treatment planning, and follow-up. The present work develops and validates a segmentation algorithm based on statistical clustering. The introduction of constraints based on background features and contiguity priors is expected to improve robustness vs clinical image characteristics such as lesion dimension, noise, and contrast level. Methods: An eight-class Gaussian mixture model (GMM) clustering algorithm was modified by constraining the mean and variance parameters of four background classes according to the previous analysis of a lesion-free background volume of interest (background modeling). Hence, expectation maximization operated only on the four classes dedicated to lesion detection. To favor the segmentation of connected objects, a further variant was introduced by inserting priors relevant to the classification of neighbors. The algorithm was applied to simulated datasets and acquired phantom data. Feasibility and robustness toward initialization were assessed on a clinical dataset manually contoured by two expert clinicians. Comparisons were performed with respect to a standard eight-class GMM algorithm and to four different state-of-the-art methods in terms of volume error (VE), Dice index, classification error (CE), and Hausdorff distance (HD). Results: The proposed GMM segmentation with background modeling outperformed standard GMM and all the other tested methods. Medians of accuracy indexes were VE <3%, Dice >0.88, CE <0.25, and HD <1.2 in simulations; VE <23%, Dice >0.74, CE <0.43, and HD <1.77 in phantom data. Robustness toward image statistic changes (±15%) was shown by the low index changes: <26% for VE, <17% for Dice, and <15% for CE. Finally, robustness toward the user-dependent volume initialization was demonstrated. The inclusion of the spatial prior improved segmentation accuracy only for lesions surrounded by heterogeneous background: in the relevant simulation subset, the median VE significantly decreased from 13% to 7%. Results on clinical data were found in accordance with simulations, with absolute VE <7%, Dice >0.85, CE <0.30, and HD <0.81. Conclusions: The sole introduction of constraints based on background modeling outperformed standard GMM and the other tested algorithms. Insertion of a spatial prior improved the accuracy for realistic cases of objects in heterogeneous backgrounds. Moreover, robustness against initialization supports the applicability in a clinical setting. In conclusion, application-driven constraints can generally improve the capabilities of GMM and statistical clustering algorithms.

60 APPLIED LIFE SCIENCES↗

Quantifying and Qualifying Alloys Based on Level of Homogenization: A U–10 wt% Mo Alloy Case Study

Homogenization heat treatment is performed to attain uniformity in microstructure of metals and metal alloys, which is helpful to achieve the desired workability and microstructure in final products, and eventually to gain predictable and consistent performance. Fabrication of fuel plates made from a low-enriched uranium alloy with 10 wt% Mo (U-10Mo) involves multiple thermomechanical processing steps. It is well known that the molybdenum homogeneity in the final formed product affects the fuel performance in the nuclear reactor. To make sure these materials are uniformly homogenized, a statistical method was proposed to quantify and characterize the Mo concentration variation in U-10Mo fuel plates by analyzing the Mo concentration measurement data from scanning electron microscopy–energy dispersive spectroscopy line scans. Statistical tolerance intervals were employed to determine the qualification of U-10Mo fuel plates. We formulate an argument for the minimum number of independent samples required to define fuel plate qualification if no Mo measurement data are available in advance, and demonstrate that the given tolerance interval requirements can be equivalently reduced to a sample variance criterion in this application. The outcome of the statistical analysis can be used to optimize casting design and eventually increase productivity and reduce fabrication cost. The statistical strategy developed in this report can be implemented for other applications, especially in the field of material manufacturing to assess qualification requirements and monitor and improve process design.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Conservation of Endophyte Bacterial Community Structure Across Two Panicum Grass Species

Panicum represents a large genus of many North American prairie grass species. These include switchgrass ( Panicum virgatum ), a biofuel crop candidate with wide geographic range, as well as Panicum hallii , a close relative to switchgrass, which serves as a model system for the study of Panicum genetics due to its diploid genome and short growth cycles. For the advancement of switchgrass as a biofuel crop, it is essential to understand host microbiome interactions, which can be impacted by plant genetics and environmental factors inducing ecotype-specific phenotypic traits. We here compared rhizosphere and root endosphere bacterial communities of upland and lowland P. virgatum and P. hallii genotypes planted at two sites in Texas. Our analysis shows that sampling site predominantly contributed to bacterial community variance in the rhizosphere, however, impacted root endosphere bacterial communities much less. Instead we observed a relatively large core endophytic microbiome dominated by ubiquitously root-colonizing bacterial genera Streptomyces , Pseudomonas , and Bradyrhizobium . Endosphere communities displayed comparable diversity and conserved community structures across genotypes of both Panicum species. Functional insights into interactions between P. hallii and its root endophyte microbiome could hence inform testable hypotheses that are relevant for the improvement of switchgrass as a biofuel crop.

59 BASIC BIOLOGICAL SCIENCES↗

SU-E-J-83: CBCT Based Rectum and Bladder Dose Tracking in the Prostate Radiotherapy

Purpose: The aim of this study is to monitor the volume changes of bladder and rectum and evaluate the dosimetric changes of bladder and rectum using daily cone-beam CT for prostate radiotherapy. Methods: The data of this study were obtained from 12 patients, totally 222 CBCTs. All the volume of the bladder and the rectum on the CBCT were normalized to the bladder and the rectum on their own original CT to monitory the volume changes. To evaluate dose delivered to the OARs, volumes that receive 70Gy (V70Gy), 60Gy, 50Gy, 40Gy and 30Gy are calculated for the bladder and the rectum, V20Gy and V10Gy for rectum additionally. And the deviation of the mean dose to the bladder and the rectum are also chosen as the evaluation parameter. Linear regression analysis was performed to identify the mean dose change of the volume change using SPSS 19. Results: The results show that the variances of the normalize volume of the bladder and the rectum are 0.15–0.58 and 0.13–0.50. The variances of V70Gy, V60Gy, V50Gy, V40Gy and V30Gy of bladder are bigger than rectum for 11 patients. The linear regression analysis indicated a negative correlation between the volume and the mean dose of the bladder (p < 0.05). A 10% increase in bladder volume will cause 5.1% (±4.3%) reduction in mean dose. Conclusion: The bladder volume change is more significant than that for rectum for the prostate cancer patient. The volume changes of rectum are not significant except air gap in the rectum. Bladder volume varies will cause significant dose change. The bladder volume monitoring before fractional treatment delivery would be crucial for accuracy dose delivery.

60 APPLIED LIFE SCIENCES↗

Directional fractal signature methods for trabecular bone texture in hand radiographs: Data from the Osteoarthritis Initiative

Purpose: To develop directional fractal signature methods for the analysis of trabecular bone (TB) texture in hand radiographs. Problems associated with the small size of hand bones and the orientation of fingers were addressed. Methods: An augmented variance orientation transform (AVOT) and a quadrant rotating grid (QRG) methods were developed. The methods calculate fractal signatures (FSs) in different directions. Unlike other methods they have the search region adjusted according to the size of bone region of interest (ROI) to be analyzed and they produce FSs defined with respect to any chosen reference direction, i.e., they work for arbitrary orientation of fingers. Five parameters at scales ranging from 2 to 14 pixels (depending on image size and method) were derived from rose plots of Hurst coefficients, i.e., FS in dominating roughness (FS{sub Sta}), vertical (FS{sub V}) and horizontal (FS{sub H}) directions, aspect ratio (StrS), and direction signatures (StdS), respectively. The accuracy in measuring surface roughness and isotropy/anisotropy was evaluated using 3600 isotropic and 800 anisotropic fractal surface images of sizes between 20 × 20 and 64 × 64 pixels. The isotropic surfaces had FDs ranging from 2.1 to 2.9 in steps of 0.1, and the anisotropic surfaces had two dominating directions of 30° and 120°. The methods were used to find differences in hand TB textures between 20 matched pairs of subjects with (cases: approximate Kellgren-Lawrence (KL) grade ≥2) and without (controls: approximate KL grade <2) radiographic hand osteoarthritis (OA). The OA Initiative public database was used and 20 × 20 pixel bone ROIs were selected on 5th distal and middle phalanges. The performance of the AVOT and QRG methods was compared against a variance orientation transform (VOT) method developed earlier [M. Wolski, P. Podsiadlo, and G. W. Stachowiak, “Directional fractal signature analysis of trabecular bone: evaluation of different methods to detect early osteoarthritis in knee radiographs,” Proc. Inst. Mech. Eng., Part H 223, 211–236 (2009)]. Results: The AVOT method correctly quantified the isotropic and anisotropic surfaces for all image sizes and scales. Values of FS{sub Sta} were significantly different (P < 0.05) between the isotropic surfaces. Using the VOT and QRG methods no differences were found at large scales for the isotropic surfaces that are smaller than 64 × 64 and 48 × 48 pixels, respectively, and at some scales for the anisotropic surfaces with size 48 × 48 pixels. Compared to controls, using the AVOT and QRG methods the authors found that OA TB textures were less rough (P < 0.05) in the dominating and horizontal directions (i.e., lower FS{sub Sta} and FS{sub H}), rougher in the vertical direction (i.e., higher FS{sub V}) and less anisotropic (i.e., higher StrS) than controls. No differences were found using the VOT method. Conclusions: The AVOT method is well suited for the analysis of bone texture in hand radiographs and it could be potentially useful for early detection and prediction of hand OA.

60 APPLIED LIFE SCIENCES↗

Multiparticle azimuthal correlations for extracting event-by-event elliptic and triangular flow in Au + Au collisions at s N N = 200 GeV

Here, we present measurements of elliptic and triangular azimuthal anisotropy of charged particles detected at forward rapidity 1 < |η| < 3 in Au + Au collisions at √ s NN = 200 GeV, as a function of centrality. The multiparticle cumulant technique is used to obtain the elliptic flow coefficients v 2 {2}, v 2 {4}, v 2 {6}, and v 2 {8}, and triangular flow coefficients v3{2} and v3{4}. Using the small-variance limit, we estimate the mean and variance of the event-by-event v 2 distribution from v 2 {2} and v 2 {4}. In a complementary analysis, we also use a folding procedure to study the distributions of v 2 and v 3 directly, extracting both the mean and variance. Implications for initial geometrical fluctuations and their translation into the final-state momentum distributions are discussed.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Modelling of volatility in monetary transmission mechanism

The aim of this paper is to compare different approaches to modeling of volatility in monetary transmission mechanism. For this purpose we built time-varying parameter VAR (TVP-VAR) model with stochastic volatility and VAR-DCC-GARCH model with conditional variance. The data from three European countries are included in the analysis: the Czech Republic, Germany and Slovakia. Results show that VAR-DCC-GARCH system captures higher volatility of observed variables but main trends and detected breaks are generally identical in both approaches.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Laser beam scattering on an inhomogeneous ensemble of elliptical discs modelling red blood cells in an ectacytometer

We have theoretically studied the effect of difference in particle shapes on the appearance of the diffraction pattern, which arises in the scattering of a laser beam on a dilute suspension of erythrocytes in an ectacytometer. We have proposed data processing algorithms allowing one to estimate the red blood cell shape parameter variance under conditions of laser ectacytometry. The conclusions of the theoretical analysis are verified experimentally. (laser methods in biology)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Onset of interfacial waves in the terahertz spectrum of a nanoparticle suspension

We used inelastic x-ray scattering to gain insight into the complex terahertz dynamics of a diluted Au-nanoparticle suspension in glycerol. Here, we observe that, albeit sparse, Au nanoparticles leave clear signatures on the dynamic response of the system, the main one being an additional mode propagating at the nanoparticle-glycerol interface. A Bayesian inferential analysis of the line shape reveals that such a mode, at variance with conventional acoustic modes, keeps a hydrodynamiclike behavior well beyond the continuous limit and down to subnanometer distances.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Dimensionality Reduction Library v 0.2

Dimensionality Reduction Library is a C++ library for dimensionality reduction. In the context of this library, dimensionality reduction is considered to consist of 1)estimation of the intrinsic dimensionality using sampled data, 2) Finding maps that reduce the dimensionality of data (forward map) or increase the dimensionality of data (reverse map) and 3) mapping arbitray coordinates to high and low dimensionalities. The library is intended to provide a consistent interface to multiple dimensionality reduction algorithms with an efficient C++ interface that runs efficiently on multicore architectures. A few routines have been optimized with an option for GPU acceleration or distributed computation. Currently the library offers intrinsic dimensionality estimation using point-PCA reconstruction error and/ residual variance. The following dimensionality reduction methods have been implemented: Principal Component Analysis Multidimensional Scaling Locally Linear Embedding IsoMap Autoencoder Neutral Networks An executable is also supplied that can be built to allow for command-line access to the library routines. A description for an application of the library for molecular structure analysis has been published.

BROWN, WILLIAM↗

Taming the Wild West: Assessing Impacts-Relevant Climate Data Products (Abbreviated Report)

Impacts-relevant Earth system data refers to observational and ESM data that are downscaled, debiased, validated, and provisioned for use by decision-makers. Impacts-relevant Earth system data is essential for mitigation and adaptation planning across a variety of regions and sectors. A vast number of these data products have emerged in recent years, which has led to confusion among stakeholders and scientists as to the best product to use. With no standard evaluation protocol available for these products, the decision on which product to use was sometimes made because it was pragmatic rather than the best product to use. This project sought to develop foundational capabilities around impacts-relevant data products that would support more informed selection and application of these products. This work has been immensely successful, driving several academic publications and supported the development of a community of practice around impacts-relevant data products. Over the project’s three years we have addressed six tasks: First, the development of standard evaluation metrics for impacts-relevant climate data; second, the development of a novel suite of atmospheric river metrics; third, the development of novel metrics for precipitation feature analysis; fourth, the development of novel metrics for assessing co-variances between temperature and precipitation; fifth, the development of a dashboard for interactive examination of impacts-relevant climate data; and sixth, the establishment of a community of practice around impacts-relevant climate data that will continue beyond the conclusion of this project.

54 ENVIRONMENTAL SCIENCES↗

Use of Criticality Eigenvalue Simulations for Subcritical Benchmark Evaluations

Subcritical multiplication experiments and simulations are important for a variety of applications including nonproliferation, safeguards, and criticality safety monitoring. Recently, subcritical experiments have been evaluated for inclusion in the International Criticality Safety Benchmark Evaluation Process (ICSBEP). In addition, new subcritical experiments have recently been designed. In these experiments, list-mode data (a list of each absorption in the neutron detector) is recorded and neutron noise analysis is used to determine the leakage multiplication (ML) of each configuration. One downside to the simulation of these types of experiments is that they are computationally expensive. This is because analog Monte Carlo with no variance reduction must be performed in order to maintain the time accuracy required in the measurement analysis. This work demonstrates that criticality eigenvalue simulations can be used to estimate sensitivities and uncertainties for three parameters: singles count rate (R{sub 1}), doubles count rate (R{sub 2}), and leakage multiplication (M{sub L}). This will provide a useful aid both in the design and evaluation of new subcritical measurements. (authors)

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

An independent analysis of bias sources and variability in wind plant pre-construction energy yield estimation methods

The wind resource assessment community has long had the goal of reducing the bias between wind plant pre-construction energy yield assessment (EYA) and the observed annual energy production (AEP). This comparison is typically made between the 50% probability of exceedance (P50) value of the EYA and the long-term corrected operational AEP (hereafter OA P50), and is known as the P50 bias. The industry has critically lacked an independent analysis of bias reduction investigated across multiple consultants to identify the greatest sources of uncertainty and variance in the EYA process and the best opportunities for uncertainty reduction. The present study addresses this gap by benchmarking consultant methodologies against each other and against operational data at a scale not seen before in industry collaborations. We consider data from 10 wind plants and evaluate discrepancies between eight consultancies in the steps taken from estimates of gross to net energy. Consultants tend to overestimate the gross energy produced at the turbines and then compensate by further overestimating downstream losses, leading to a mean P50 bias near zero, still with significant variability among the individual wind plants. Within our data sample, we find that consultant estimates of all loss categories, except environmental losses, tend to reduce the project-to-project variability of the P50 bias. The disagreement between consultants, however, remains flat throughout the addition of losses. Finally, we find that differences in consultants’ estimates of project performance can lead to differences up to $10/MWh in the levelized cost of energy for a wind plant.

Todd, Austin C.↗