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At least 343 records · Page 19

Verification of an energy-conserving semi-implicit electrostatic particle-in-cell scheme for modeling high-density plasma at scale

A verification study of a semi-implicit energy-conserving electrostatic particle-in-cell algorithm is presented. The algorithm relaxes the time-step and mesh-size constraints that require resolution of the plasma period and Debye length associated with traditional explicit momentum-conserving particle-in-cell algorithms. Physical implications and applicability of using the semi-implicit scheme for modeling high-density plasmas are discussed. Where possible, numerical results are compared against analytical solutions. The simulation results indicate that the algorithm is stable at time steps larger than twice the inverse plasma frequency and cell sizes larger than the Debye length. It is found that the algorithm gives adequate results, provided that the distribution function and the spatiotemporal scales dictating the physics of the problem are resolved. As such, the algorithm may provide a robust method for kinetic modeling of high-density plasmas at scale.

Cyclotron resonance↗

Analytic model of dislocation density evolution in fcc polycrystals accounting for dislocation generation, storage, and dynamic recovery mechanisms

Here, an analytic model of the evolution of dislocation density in fcc polycrystals is described. The evolution equations approximately account for most known dislocation storage, dynamic recovery, and dislocation generation mechanisms in fcc polycrystals. Specifically, the model incorporates network (forest) and grain boundary storage, mobile-network and mobile–mobile annihilation, screw–screw annihilation via athermal and thermal single cross-slip, generation by double cross-slip (Koehler mechanism, including dipole formation), Frank-Read sources, grain boundary nucleation, and mobile–immobile dislocation nucleation due to shock loading. Single cross-slip is assumed to proceed through the Friedel–Escaig (FE) mechanism; the corresponding activation energy is calculated using a modified FE model. The activation energy for double cross-slip is calculated for the first time by extending the FE model. The exact evolution equations are integro-differential equations, and as such are difficult to implement in a code; hence, the evolution equations are simplified by making several approximations. Preliminary results on copper are presented, including comparisons to experimental data.

36 MATERIALS SCIENCE↗

A multishock model for the density variance of anisotropic, highly magnetized, supersonic turbulence

ABSTRACT Shocks form the basis of our understanding for the density and velocity statistics of supersonic turbulent flows, such as those found in the cool interstellar medium (ISM). The variance of the density field, $\sigma ^2_{\rho /\rho _0}$, is of particular interest for molecular clouds (MCs), the birthplaces of stars in the Universe. The density variance may be used to infer underlying physical processes in an MC, and parametrizes the star formation (SF) rate of a cloud. However, models for $\sigma ^2_{\rho /\rho _0}$ all share a common feature – the variance is assumed to be isotropic. This assumption does not hold when a trans-/sub-Alfvénic mean magnetic field, ${B}_0$, is present in the cloud, which observations suggest is relevant for some MCs. We develop an anisotropic model for $\sigma _{\rho /\rho _0}^2$, using contributions from hydrodynamical and fast magnetosonic shocks that propagate orthogonal to each other. Our model predicts an upper bound for $\sigma _{\rho /\rho _0}^2$ in the high Mach number $(\mathcal {M})$ limit as small-scale density fluctuations become suppressed by the strong ${B}_0$. The model reduces to the isotropic $\sigma _{\rho /\rho _0}^2\!-\!\mathcal {M}$ relation in the hydrodynamical limit. To validate our model, we calculate $\sigma _{\rho /\rho _0}^2$ from 12 high-resolution, three-dimensional, supersonic, sub-Alfvénic magnetohydrodynamical (MHD) turbulence simulations and find good agreement with our theory. We discuss how the two MHD shocks may be the bimodally oriented overdensities observed in some MCs and the implications for SF theory in the presence of a sub-Alfvénic ${B}_0$. By creating an anisotropic, supersonic density fluctuation model, this study paves the way for SF theory in the highly anisotropic regime of interstellar turbulence.

Beattie, James R.↗

1-D models of induced density enhancements in hot-star winds

We present a 1-D dynamical model of large-scale flow structures induced in a hot-star wind by an initial density perturbation in the inner wind. The resulting wind response is very complex, but includes strong density enhancements that propagate slowly outward through the wind. These density structures exhibit a very slow outward acceleration reminiscent of the discrete absorption components frequently observed in unsaturated UV lines formed in hot-star winds.

Owocki, S. P.↗

Photoionization Models for High Density Gas

Relativistically broadened and redshifted 6.4 – 6.9 keV iron K lines are observed from many accretion powered objects, including X-ray binaries and active galactic nuclei(AGN). Existence of gas close to the central engine implies large radiation intensities and correspondingly large gas densities if the gas is to remain partially ionized. Simple estimates indicate that high gas densities are needed to allow survival of iron against ionization. These are high enough that rates for many atomic processes are affected by mechanisms related to interactions with nearby ions and electrons. Radiation intensities are high enough that stimulated processes can be important. Most models currently in use for interpreting relativistic lines use atomic rate coefficients designed for use at low densities and neglect stimulated processes. In our work so far we have presented atomic structure calculations with the goal of providing physically appropriate models at densities consistent with line-emitting gas near compact objects. In this paper we apply these rates to photoionization calculations, and produce ionization balance curves and X-ray emissivities and opacities which are appropriate for high densities and high radiation intensities. The final step in our program will be presented in a subsequent paper: Model atmosphere calculations which incorporate these rates into synthetic spectra.

T Kallman↗

A dislocation density-based continuum model of the anisotropic shock response of single crystal α-cyclotrimethylene trinitramine

Here, we have developed a model for the finite deformation thermomechanical response of α-cyclotrimethylene trinitramine (RDX). Our model accounts for nonlinear thermoelastic lattice deformation through a free energy-based equation of state developed by Cawkwell et al. (2016) in combination with temperature and pressure dependent elastic constants, as well as dislocation-mediated plastic slip on a set of slip systems motivated by experimental observation. The kinetics of crystal plasticity are modeled using the Orowan equation relating slip rate to dislocation density and the dislocation velocity developed by Austin and McDowell (2011), which naturally accounts for transition from thermally activated to dislocation drag limited regimes. Evolution of dislocation density is specified in terms of local ordinary differential equations reflecting dislocation–dislocation interactions. This paper presents details of the theory and parameterization of the model, followed by discussion of simulations of flyer plate impact experiments. Impact conditions explored within this combined simulation and experimental effort span shock pressures ranging from 1 to 3 GPa for four crystallographic orientations and multiple specimen thicknesses. Simulation results generated using this model are shown to be in strong agreement with velocimetry measurements from the corresponding plate impact experiments. Finally, simulation results are used to motivate conclusions about the nature of dislocation-mediated plasticity in RDX.

36 MATERIALS SCIENCE↗

A Novel Analytical Population Tumor Control Probability Model Includes Cell Density and Volume Variations: Application to Canine Brain Tumor

Tumor control probability (TCP) models based on Poisson statistics characterize the distribution of surviving clonogens. Thus enabling the calculation of TCP for individuals. To mathematically describe clinically observed survival data of patient cohorts it is necessary to extend the Poisson TCP model. This is typically done by either incorporating variations of model parameters or by using an empirical logistic model. The purpose of this work is the development of an analytical population TCP model by mechanistic extension of the Possion model.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Density-Functional-Theory Modeling of Cation Diffusion in Bulk La 1 - x Sr x MnO 3 ± δ ( x = 0.0 – 0.25 ) for Solid-Oxide Fuel-Cell Cathodes

In this work, the A - and B -site cation migration pathways involving defect complexes in bulk La 1-x Sr x MnO 3±δ (LSM) at x = 0.0-0.25 are investigated based on density-functional-theory modeling for solid-oxide fuel-cell (SOFC) cathode applications. We propose a dominant A -site cation migration mechanism which involves an A -site cation (e.g., La$x\atop{A}$) V A "' of a V A "' -V B "' cluster, where La$x\atop{A}$, V A "' and V B "' are La 3+ , A-site vacancy, and B-site vacancy in bulk LSM, respectively, and V A "' -V B "' is the first nearest-neighbor V A "' and V B "' pair. This hop exhibits an approximately 1.6-eV migration barrier as compared to approximately 2.9 eV of the La$x\atop{A}$ hop into a V A "'. This decrease in the cation migration barrier is attributed to the presence of the V B "' relieving the electrostatic repulsion and steric constraints to the migrating A-site cations in the transition-state image configurations.

03 NATURAL GAS↗

A Coupled Plasma-Sheath Model for High Density Sources

High density, low pressure plasmas are used for etching and deposition in microelectronics fabrication processes. The process characteristics are strongly determined by the ion energy distribution (IED) and the ion flux arriving at the substrate that are responsible for desorption of etch products and neutral dissociation at the surface. The ion flux and energy are determined by a self- consistent modeling of the bulk plasma, where the ions and the neutral radicals are produced, and the sheath, where the ions are accelerated. Due to their widely different time scales, it is a formidable task to self-consistently resolve non-collisional sheath in a high density bulk plasma model. In this work, we first describe a coupled plasma-sheath model that attempts to resolve the non-collisional sheath in a reactor scale model. Second, we propose a semianalytical radio frequency (RF) sheath model to improve ion dynamics.

Bose, Deepak↗

Eulerian finite element implementations of a dislocation density-based continuum model

In Eulerian finite element simulations, the mesh moves relative to the material. After every change of position between the mesh and the material, the state variables are interpolated to the new mesh position, which is referred to as advection. Large strain crystal plasticity models are based on the multiplicative decomposition of the total deformation gradient. Further, the stress is evaluated as a function of the thermoelastic strain, temperature, and other state variables. Advection of tensor quantities, such as the strain, is coupled with possibly significant advection errors. In an effort to reduce the advection errors, we develop two rate forms of an established dislocation density-based continuum model. To that end, we replace the multiplicative decomposition of the deformation gradient with the additive decomposition of the velocity gradient, and define the stress rate instead of the total stress. The Eulerian implementation is compared with Lagrangian calculations, and two numerical examples with severe deformation levels are presented.

36 MATERIALS SCIENCE↗

Eulerian finite element simulations of the drop weight impact test with a dislocation Density-based continuum model

During a drop weight impact test, the kinetic energy of the falling weight is transferred into the sample resting on the anvil. The plastic deformation in the sample is an important mechanism for the dissipation of the input kinetic energy. We use Eulerian finite element analysis to simulate the deformation and temperature evolution in a 1,3,5-trinitro-1,3,5-triazine (RDX) sample consisting of multiple crystals. In Eulerian finite element simulations, the mesh moves relative to the material. After every change of position between the mesh and the material, the state variables are interpolated to the new mesh position, i.e., advection. In an effort to reduce the advection errors, we use a rate form of a dislocation density-based continuum model by Luscher et al. Here, the simulations predict localization of plastic deformation, and plastic dissipation as a significant source of heat generation.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Extracting model-independent nuclear level densities away from stability

The nuclear level density (NLD) is a fundamental measure of the complex structure of atomic nuclei at relatively high energies. Here, in this study, we present the first model-independent measurement of the absolute partial NLD for a short-lived nucleus. For this purpose we adapt the recently introduced “shape method” for β-decay experiments, providing the shape of the γ-ray strength function for exotic nuclei. In this work, we show that combining the shape method with the β-Oslo technique allows for the extraction of the NLD of the populated states without the need for theoretical input. This development opens the way for the extraction of experimental NLDs far from stability with major implications in astrophysical and other applications. We benchmark our approach using data for the stable 76 Ge nucleus, finding excellent agreement with previous experimental results. In addition, we present new experimental data and determine the absolute partial level density for the short-lived 88 Kr nucleus. Our results suggest a fivefold increase in the NLD for the case of 88 Kr, compared to the recommended values from semimicroscopic Hartree-Fock Bogoliubov calculations recommended by the RIPL3 nuclear data library. However, our results are in good agreement with other semimicroscopic level density models. We demonstrate the impact of our method on the 87 Kr(n, γ) neutron capture rate and show that our experimental uncertainties for NLDs fulfill the requirements needed for astrophysical calculations predicting r-process abundances.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

De novo atomic protein structure modeling for cryoEM density maps using 3D transformer and HMM

Accurately building 3D atomic structures from cryo-EM density maps is a crucial step in cryo-EM-based protein structure determination. Converting density maps into 3D atomic structures for proteins lacking accurate homologous or predicted structures as templates remains a significant challenge. Here, we introduce Cryo2Struct, a fully automated de novo cryo-EM structure modeling method. Cryo2Struct utilizes a 3D transformer to identify atoms and amino acid types in cryo-EM density maps, followed by an innovative Hidden Markov Model (HMM) to connect predicted atoms and build protein backbone structures. Cryo2Struct produces substantially more accurate and complete protein structural models than the widely used ab initio method Phenix. Additionally, its performance in building atomic structural models is robust against changes in the resolution of density maps and the size of protein structures.

59 BASIC BIOLOGICAL SCIENCES↗

Fully consistent Eulerian Monte Carlo fields method for solving probability density function transport equations in turbulence modeling

The probability density function (PDF) transport equation method is a sophisticated model for the closure of turbulent mixing and turbulent reactive flows. An efficient solution approach for solving the PDF transport equation has been vital for the method to be widely used in applications. The Eulerian Monte Carlo fields (EMCF) method has been developed to solve the PDF transport equation efficiently for decades. A recent work by Wang et al. revealed a serious issue of the EMCF method for not being fully consistent with the PDF transport equation for which the method is designed to solve. This work advances the state of the art by introducing fully consistent EMCF methods for solving the PDF transport equation. The fully consistent EMCF formulations are derived for two different PDF equation forms. The consistency of the EMCF formulations is mathematically confirmed by examining the derived moment transport equations from the EMCF formulations and from the PDF transport equation. The method of manufactured solutions is employed to further verify the consistency and convergence of the different EMCF formulations numerically. The newly introduced EMCF formulations bring the EMCF method to full consistency with the PDF transport equations for the first time.

42 ENGINEERING↗

Radial transport modeling of high density deuterium plasmas in proto-MPEX with the B2.5-Eirene code

High density (≥6 × 10 19 m –3 ), low temperature (2–6 eV) helicon discharges in the Prototype Material Plasma Exposure eXperiment (Proto-MPEX) are analyzed with the coupled multifluid plasma, kinetic neutrals code B2.5-Eirene. The interpretative analyses are constrained by data from multiple diagnostics, including Langmuir probes, Mach probes, filterscopes, infrared TV system, Thomson scattering, and baratrons. The objectives of the transport simulations include: investigation of the effects of heating, fueling, and plasma production; pumping, and assumed radial transport models on the calculated density and temperature distributions; plasma flow profiles and power balance. The primary objective in this report is to investigate the effects of the radial transport model in full plasma (the entire length of the plasma column in Proto-MPEX) data-constrained simulations. Results from three assumed forms of the radial transport coefficients are presented, including spatially constant, radially decreasing, and Bohm (D,χ ~T e /|B|). The results from each of the three transport coefficient sets agree qualitatively with the core (near axis) data. With the implicit T e dependence, the Bohm coefficients tend to decrease as functions of radius, although not as strongly as the centrally peaked set. The axial variation in the Bohm coefficients is largely due to the axial structure of the magnetic field. Furthermore, the agreement of the simulations and the diagnostic data with the Bohm set indicates that transport in the plasma column of Proto-MPEX is dominated by Bohm diffusion.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

A model for the temperature and composition effects in the semiannual variations of the thermospheric density

A model is proposed in which latitudinal variations in composition and temperature are used to interpret the semiannual effect in the thermospheric density. Two heat sources are postulated for the semiannual circulation: one at high latitudes associated with the semiannual component in the occurance of magnetic storms and a second weaker one that peaks at the equator associated with the semiannual migration between both hemispheres. Depending on the relative magnitude of these sources, the latitude regions in which composition and temperature effects dominate vary. The temperature effects however should be expected weakest at low to mid latitudes where the relative concentration of atomic oxygen is enriched during equinox. At high latitudes the semiannual temperature component would peak, associated with an oxygen depletion in the lower thermosphere during equinox. In combining these features it is shown that the total atmospheric density could still exhibit a relatively small latitude dependence in the semiannual component with the tendency to decrease at high latitudes, in agreement with observations.

Mayr, H. G.↗

Empirical Models of the Plasma Density in the Inner Magnetosphere

The radio plasma imager (RPI) on the IMAGE satellite performs radio sounding in the magnetosphere, transmitting coded signals stepping through the frequency range of interest and receiving the returned echoes. The measurements provide the echo amplitude as a function of frequency and echo delay time on a so-called plasmagram. A newly developed algorithm inverts THE echo traces on a plasmagram to electron density spatial distributions. Rased on these observed density distributions, an empirical model is constructed to describe the two-dimensional density distribution in the inner magnetosphere.

Huang, X.↗