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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 343 records · Page 19
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Characterization of a novel aromatic substrate-processing microcompartment in Actinobacteria

ABSTRACT We have discovered a new cluster of genes that is found exclusively in the Actinobacteria phylum. This locus includes genes for the 2-aminophenol meta -cleavage pathway and the shell proteins of a bacterial microcompartment (BMC) and has been named aromatics (ARO) for its putative role in the breakdown of aromatic compounds. In this study, we provide details about the distribution and composition of the ARO BMC locus and conduct phylogenetic, structural, and functional analyses of the first two enzymes in the catabolic pathway: a unique 2-aminophenol dioxygenase, which is exclusively found alongside BMC shell genes in Actinobacteria, and a semialdehyde dehydrogenase, which works downstream of the dioxygenase. Genomic analysis reveals variations in the complexity of the ARO loci across different orders. Some loci are simple, containing shell proteins and enzymes for the initial steps of the catabolic pathway, while others are extensive, encompassing all the necessary genes for the complete breakdown of 2-aminophenol into pyruvate and acetyl-CoA. Furthermore, our analysis uncovers two subtypes of ARO BMC that likely degrade either 2-aminophenol or catechol, depending on the presence of a pathway-specific gene within the ARO locus. The precise precursor of 2-aminophenol, which serves as the initial substrate and/or inducer for the ARO pathway, remains unknown, as our model organism Micromonospora rosaria cannot utilize 2-aminophenol as its sole energy source. However, using enzymatic assays, we demonstrate the dioxygenase’s ability to cleave both 2-aminophenol and catechol in vitro , in collaboration with the aldehyde dehydrogenase, to facilitate the rapid conversion of these unstable and toxic intermediates. IMPORTANCE Bacterial microcompartments (BMCs) are proteinaceous organelles that are widespread among bacteria and provide a competitive advantage in specific environmental niches. Studies have shown that the genetic information necessary to form functional BMCs is encoded in loci that contain genes encoding shell proteins and the enzymatic core. This allows the bioinformatic discovery of BMCs with novel functions and expands our understanding of the metabolic diversity of BMCs. ARO loci, found only in Actinobacteria, contain genes encoding for phylogenetically remote shell proteins and homologs of the meta -cleavage degradation pathway enzymes that were shown to convert central aromatic intermediates into pyruvate and acetyl-CoA in gamma Proteobacteria. By analyzing the gene composition of ARO BMC loci and characterizing two core enzymes phylogenetically, structurally, and functionally, we provide an initial functional characterization of the ARO BMC, the most unusual BMC identified to date, distinctive among the repertoire of studied BMCs.

2-AP 1,6-dioxygenase↗
DOE OSTI2025

Chemical speciation correlated with microstructural heterogeneity of interdicted uranium materials

Two uranium powders seized by law enforcement in Victoria, Australia, have been characterized by established nuclear forensic methods in a previously published study. Here, in this work, the results of further characterization by a scanning transmission x-ray microscope (STXM) operating in the soft x-ray regime are reported. STXM images are used to estimate the elemental distribution in micrometer-scale particles of each powder, and oxygen K-edge absorption spectra are used to determine the chemical state of uranium. The results of the current study are consistent with the previous analysis; the first powder is found to be a potassium-uranium hydrate, while the second powder is determined to be a mixture of uranium oxides primarily consisting of UO 3 .

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗
DOE OSTI2026

DESI DR2 Galaxy luminosity functions

We present galaxy luminosity functions (LFs) for the Dark Energy Spectroscopic Instrument (DESI) DR2 Bright Galaxy Survey (BGS) in the g, r, z, and $w1$ bands over $0.002\lt z\lt 0.6$. Our analysis uses updated k-corrections and evolutionary corrections, including new polynomial kcorrection fits derived from BGS Year 1 data that supersede earlier GAMA-based prescriptions. Exploiting the statistical power of DESI, we measure LFs to very faint magnitudes, reaching $^{0.1}M_r-5\log h\sim -10$. Independent measurements from the North and South survey regions show excellent agreement around the LF knee, but the very small statistical uncertainties reveal that simple analytic forms fail to capture the full LF shape. The bright end departs from a pure exponential decline, while the faint end exhibits complex, non-powerlaw behaviour, including a pronounced upturn at $^{0.1}M_r-5\log h\gtrsim -15$, which is stronger for red galaxies than for blue. We show that our LFs are largely complete for galaxies with surface brightness $\mu _{50}\lt 25$, and that an apparent steepening fainter than $-13$ is driven primarily by local overdensity and fragmentation of large galaxies. A systematic North–South offset at the brightest magnitudes is traced to red galaxies and may reflect shallower North photometry underestimating extended earlytype profiles, although this remains inconclusive. We therefore also provide LFs based on model Petrosian magnitudes. Redshift splitting reveals small but significant residuals, indicating limitations of a simple global evolutionary model. Using the redshift limits of J. Loveday et al. (2012), we find excellent agreement with GAMA, with substantially reduced statistical errors. These measurements provide a precise reference for studies of environmental and population-dependent LFs and for testing galaxy formation models.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2025

Clarifying the trophic state concept to advance macroscale freshwater science and management

For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use‐specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth are used to classify TS based on autotrophic production, whereas phosphorus, dissolved organic carbon, and true color are used to classify TS based on both autotrophic and heterotrophic production. Both classification approaches aim to characterize an ecosystem's function broadly, but with varying degrees of autotrophic and heterotrophic processes considered in those characterizations. Moreover, differing classification schemes can create inconsistent interpretations of ecosystem integrity. For example, the US Clean Water Act focuses exclusively on algal threats to water quality, framed in terms of eutrophication in response to nutrient loading. This usage lacks information about non‐algal threats to water quality, such as dystrophication in response to dissolved organic carbon loading. Consequently, the TS classification schemes used to identify eutrophication and dystrophication may refer to ecosystems similarly (e.g., oligotrophic and eutrophic), yet these categories are derived from different proxies. These inconsistencies in TS classification schemes may be compounded when interdisciplinary projects employ varied TS frameworks. Even with these shortcomings, TS can still be used to distill information on complex aquatic ecosystem function into a set of generalizable expectations. The usefulness of distilling complex information into a TS index is substantial such that usage inconsistencies should be explicitly addressed and resolved. To emphasize the consequences of diverging TS classification schemes, we present three case studies for which an improved understanding of the TS concept advances freshwater research, management efforts, and interdisciplinary collaboration. To increase clarity in TS, the aquatic sciences could benefit from including information about the proxy variables, ecosystem type, as well as the spatiotemporal domains used to classify TS. As the field of aquatic sciences expands and climatic irregularity increases, we highlight the importance of re‐evaluating fundamental concepts, such as TS, to ensure their compatibility with evolving science.

classification↗
DOE OSTI2026

Reassessing Hybrid Vigor or Hybrid Dysfunction Using Physiological Trade-Offs in an Endangered Salamander System

Fitness of interspecific hybrids can be higher or lower than that of their parental genotypes, with major ramifications for evolution and conservation. A recent study found that hybrid tiger salamanders had higher metabolic rates than their parental forms. Specifically, the ratio of resting metabolic rate to water loss, which was used as a measure of performance, was greater in hybrids. Recent genetic research showed that over half of the experimental subjects in that study were genetically pure California tiger salamanders (Ambystoma californiense) misclassified as hybrids. We reanalyzed the data using the corrected identification of hybrids and parentals. As expected, updating the classification revealed even stronger evidence for differences between hybrids and parentals. Hybrids had higher resting metabolic rates and greater water loss than parentals. The ratio of resting metabolic rate to water loss was also higher in hybrids. However, we suggest that this ratio might not be a positive measure of salamander performance. Higher metabolic rate means higher energy expenditure, and higher water loss suggests increased risk of desiccation. Both are major challenges for terrestrial amphibians, especially salamanders, which are hypothesized to be low-energy, low-water-loss specialists. Under this hypothesis, the ratio of energy expenditure to water loss is a ratio of two costs rather than a ratio of benefit to cost. While our analyses corroborate and strengthen the previous statistical results, we suggest that high resting metabolic rate is better interpreted as hybrid dysfunction, not vigor. Here, both hypotheses are speculative, and specific research on the fitness effects of these physiological differences is needed to resolve this important ecological question.

Ambystoma californiense↗
DOE OSTI2025

The Detection and Attribution Model Intercomparison Project (DAMIP v2.0) contribution to CMIP7

The first version of the Detection and Attribution Model Intercomparison Project (DAMIP v1.0) coordinated key simulations exploring the role of individual forcings in past, current and future climate as part of the Coupled Model Intercomparison Project, Phase 6 (CMIP6). The simulations have been used extensively in the literature for detection and attribution of long-term changes, constraining projections of climate change, attributing extreme events and understanding drivers of past and future simulated climate changes. Attribution studies using DAMIP v1.0 simulations underpinned prominent assessments of human-induced warming in the Intergovernmental Panel on Climate Change (IPCC) Sixth Assessment Report. Here, we describe the set of DAMIP v2.0 simulations, proposed for the next phase of CMIP, CMIP7. Detection and attribution studies rely on pre-industrial control simulations and historical simulations, which will be part of the Diagnostic, Evaluation and Characterization of Klima (DECK) set of simulations for CMIP7. In addition, we identify the three highest-priority single-forcing experiments for CMIP7 to be run as “Assessment Fast Track” simulations in support of the Seventh Assessment Report of the IPCC: simulations with natural forcings only, anthropogenic well-mixed greenhouse gases only and anthropogenic aerosols only. Beyond this, the DAMIP v2.0 experimental design includes full-column ozone-only simulations and land-use-only simulations, such that the set of individual forcing experiments, when these are considered together, represents the full set of historical forcings. While concentration-driven simulations are prioritised for attribution, emissions-driven versions of the DAMIP experiments are also proposed to support understanding of the influence of carbon-cycle feedbacks on the simulated responses to individual forcings.

Gillett, Nathan P. [Environment and Climate Change↗
DOE OSTI2019

Life cycle assessment of biochar produced from forest residues using portable systems

Forest fires are getting extreme and more frequent because of increased fuel loads in the forest and extended dry conditions. Fuel treatment (i.e., thinning) methods to mitigate forest fires will generate large volumes of forest residues together with available logging residues that can be used to produce biochar. It has been proposed that portable biochar systems are economical means to utilize forest residues as an alternative to slash burning. In this study, the environmental impacts of biochar produced from forest residues using three portable systems [1. Biochar Solutions Incorporated (BSI), 2. Oregon Kiln, and 3. Air-curtain Burner] were evaluated using a cradle-to-gate life-cycle assessment approach. Environmental impacts were analyzed considering the various quality of feedstock, biomass collection methods, different production sites, and various sources of power used in the production of biochar. The results illustrate that the global warming potential (GWP) of biochar production from forest residues through BSI, Oregon Kiln, and Air-Curtain Burner were 0.25–0.31, 0.11, and 0.16 tonne CO 2 eq./tonne of fixed carbon in biochar respectively. Compared to pile burn, biochar production from forest residues with a portable system at the landing, reduced global warming potential (GWP) by 1.92–2.83, 2.7, and 1.9 tonnes CO 2 eq./tonne of biochar through BSI, Oregon Kiln, and Air-Curtain Burner respectively. The Air-Curtain Burner and Oregon Kiln have minimal feedstock preparation, thus have lower environmental impacts than the BSI system. The BSI system requires feedstock preparation and power to operate the system. The use of the biomass-gasifier generator improved the environmental performance substantially (16–280%) compared with a diesel generator in biochar production. Overall, the net GWP in biochar produced (0.10–1.63 tonne CO 2 eq./tonne of residues) from forest residues can reduce environmental impacts (2–40 times lower net CO 2 eq. emissions) compared to slash burning.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Increased abundance of a common scavenger affects allocation of carrion but not efficiency of carcass removal in the Fukushima Exclusion Zone

Abstract The 2011 nuclear accident in Fukushima, Japan caused the evacuation of > 100,000 people and prompted studies on environmental impacts of radiological contamination. However, few researchers have explored how the human evacuation has affected ecosystem processes. Despite contamination, one common scavenger (wild boar, Sus scrofa ) is 2–3× more abundant inside the Fukushima Exclusion Zone (FEZ). Shifts in abundance of some scavenger species can have cascading effects on ecosystems, so our objective was to investigate impacts of the evacuation and the resulting increase in wild boar on vertebrate scavenger communities. We deployed cameras at 300 carcasses in the FEZ and a nearby inhabited area, and quantified carcass fate, scavenger species, and detection/persistence times. We also tested effects of carcass size and habitat on scavenger community composition and efficiency by balancing trials across two carcass sizes and habitats in each zone. Overall scavenger richness and carcass removal rates (73%) were similar in the FEZ and inhabited area, but species-specific carcass removal rates and occurrence differed between zones. Wild boar removed substantially more carcasses inside the FEZ, with implications for nutrient and contaminant distribution. Our results suggest carcass size affects scavenging dynamics more than human activity or habitat, and abundance changes of common scavengers can influence carrion resource allocation.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

A convergence research perspective on graduate education for sustainable urban systems science

Sustainable urban systems (SUS) science is a new science integrating work across established and emerging disciplines, using diverse methods, and addressing issues at local, regional, national, and global scales. Advancing SUS requires the next generation of scholars and practitioners to excel at synthesis across disciplines and possess the skills to innovate in the realms of research, policy, and stakeholder engagement. Here, we outline key tenets of graduate education in SUS, informed by historical and global perspectives. The sketch is an invitation to discuss how graduates in SUS should be trained to engage with the challenges and opportunities presented by continuing urbanization.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2022

Cell wall ester modifications and volatile emission signatures of plant response to abiotic stress

Abstract Growth suppression and defence signalling are simultaneous strategies that plants invoke to respond to abiotic stress. Here, we show that the drought stress response of poplar trees ( Populus trichocarpa ) is initiated by a suppression in cell wall derived methanol (MeOH) emissions and activation of acetic acid (AA) fermentation defences. Temperature sensitive emissions dominated by MeOH (AA/MeOH <30%) were observed from physiologically active leaves, branches, detached stems, leaf cell wall isolations and whole ecosystems. In contrast, drought treatment resulted in a suppression of MeOH emissions and strong enhancement in AA emissions together with volatiles acetaldehyde, ethanol, and acetone. These drought‐induced changes coincided with a reduction in stomatal conductance, photosynthesis, transpiration, and leaf water potential. The strong enhancement in AA/MeOH emission ratios during drought (400%–3500%) was associated with an increase in acetate content of whole leaf cell walls, which became significantly 13 C 2 ‐labelled following the delivery of 13 C 2 ‐acetate via the transpiration stream. The results are consistent with both enzymatic and nonenzymatic MeOH and AA production at high temperature in hydrated tissues associated with accelerated primary cell wall growth processes, which are downregulated during drought. While the metabolic source(s) require further investigation, the observations are consistent with drought‐induced activation of aerobic fermentation driving high rates of foliar AA emissions and enhancements in leaf cell wall O ‐acetylation. We suggest that atmospheric AA/MeOH emission ratios could be useful as a highly sensitive signal in studies investigating environmental and biological factors influencing growth‐defence trade‐offs in plants and ecosystems.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Microbial Tracking-2, a metagenomics analysis of bacteria and fungi onboard the International Space Station

The International Space Station (ISS) is a unique and complex built environment with the ISS surface microbiome originating from crew and cargo or from life support recirculation in an almost entirely closed system. The Microbial Tracking 1 (MT-1) project was the first ISS environmental surface study to report on the metagenome profiles without using whole-genome amplification. The study surveyed the microbial communities from eight surfaces over a 14-month period. The Microbial Tracking 2 (MT-2) project aimed to continue the work of MT-1, sampling an additional four flights from the same locations, over another 14 months. Eight surfaces across the ISS were sampled with sterile wipes and processed upon return to Earth. DNA extracted from the processed samples (and controls) were treated with propidium monoazide (PMA) to detect intact/viable cells or left untreated and to detect the total DNA population (free DNA/compromised cells/intact cells/viable cells). DNA extracted from PMA-treated and untreated samples were analyzed using shotgun metagenomics. Samples were cultured for bacteria and fungi to supplement the above results. Staphylococcus sp. and Malassezia sp. were the most represented bacterial and fungal species, respectively, on the ISS. Overall, the ISS surface microbiome was dominated by organisms associated with the human skin. Multi-dimensional scaling and differential abundance analysis showed significant temporal changes in the microbial population but no spatial differences. The ISS antimicrobial resistance gene profiles were however more stable over time, with no differences over the 5-year span of the MT-1 and MT-2 studies. Twenty-nine antimicrobial resistance genes were detected across all samples, with macrolide/lincosamide/streptogramin resistance being the most widespread. Metagenomic assembled genomes were reconstructed from the dataset, resulting in 82 MAGs. Functional assessment of the collective MAGs showed a propensity for amino acid utilization over carbohydrate metabolism. Co-occurrence analyses showed strong associations between bacterial and fungal genera. Culture analysis showed the microbial load to be on average 3.0 × 10 5 cfu/m 2 . Utilizing various metagenomics analyses and culture methods, we provided a comprehensive analysis of the ISS surface microbiome, showing microbial burden, bacterial and fungal species prevalence, changes in the microbiome, and resistome over time and space, as well as the functional capabilities and microbial interactions of this unique built microbiome. Data from this study may help to inform policies for future space missions to ensure an ISS surface microbiome that promotes astronaut health and spacecraft integrity.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

DARHT : Enduring Lessons from a Technical Project in a National Laboratory Context [Slides]

The Dual-Axis Radiographic Hydrodynamic Test (DARHT) facility at Los Alamos National Laboratory (LANL) is the world’s first flash x-ray facility able to take multiple high-resolution radiographs of the interior features of fast-moving dense objects during a single experiment. DARHT’s radiography and complimentary diagnostics makes it an important diagnostic tool in support of the US Department of Energy’s (DOE)/National Nuclear Security Administration (NNSA)’s stewardship of the US nuclear deterrent. The project to construct DARHT ran from 1988 through 2003. Initial Operating Capability along a single axis began in 1999. A technical issue delayed Critical Decision 4 for the full dual-axis capability until 2008. DARHT was characterized by several directed changes resulting from an environmental impact study, changes to the global security context resulting from the end of underground nuclear testing, and rapid evolution of applicable technology. Conventional building and lab-space construction were part of the project, but the project was dominated by Special Facility Equipment that, together with the mission to support the nuclear weapons program, required the project to be completed by national laboratories. Although the project pre-dated implementation of DOE Order 413.3, several important lessons for national laboratory projects remain applicable today and will be discussed here, including projects appropriate for the national laboratory environment, scope stability, risk acceptance and mitigation, communication, and collaboration. Finally, considerations for DOE contractor project managers are offered based upon the DARHT experience.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2022

Convective Parameters Derived from Radiosonde Data (SONDEPARAM) Value-Added Product Report

Radiosondes provide fundamental observations of the vertical profile of atmospheric state (pressure, temperature, humidity, and winds), with important implications for subsequent studies on environmental controls on cloud conditions. Within convective cloud environments, there is an increasing demand for additional value-added products (VAPs) to facilitate the use of U.S. Department of Energy Atmospheric Radiation Measurement (ARM) user facility radiosonde data sets. Such VAPs should provide quick and reliable estimates for several standard radiosonde parameters or quantities of interest using common assumptions, as well as open, flexible code for visualization and user interaction. The Convective Parameters Derived from Radiosonde Data (SONDEPARAM) VAP will apply several robust algorithms used in Wang et al. (2020) for the calculation of useful radiosonde convective cloud parameters, including the convective available potential energy (CAPE), convective inhibition (CIN), and other convective parameters, for several different assumptions regarding the initial parcel characteristics (i.e., surface-based, most unstable, mixed layer). These ARM VAP codes are developed in open, flexible Python formats, with the intention that these parameters/calculations will be incorporated into traditional ARM quick-look radiosonde plotting, yet associated with user-available codes for ease in user reproduction and assumption modification.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

microTrait: A Toolset for a Trait-Based Representation of Microbial Genomes

Remote sensing approaches have revolutionized the study of macroorganisms, allowing theories of population and community ecology to be tested across increasingly larger scales without much compromise in resolution of biological complexity. In microbial ecology, our remote window into the ecology of microorganisms is through the lens of genome sequencing. For microbial organisms, recent evidence from genomes recovered from metagenomic samples corroborate a highly complex view of their metabolic diversity and other associated traits which map into high physiological complexity. Regardless, during the first decades of this omics era, microbial ecological research has primarily focused on taxa and functional genes as ecological units, favoring breadth of coverage over resolution of biological complexity manifested as physiological diversity. Recently, the rate at which provisional draft genomes are generated has increased substantially, giving new insights into ecological processes and interactions. From a genotype perspective, the wide availability of genome-centric data requires new data synthesis approaches that place organismal genomes center stage in the study of environmental roles and functional performance. Extraction of ecologically relevant traits from microbial genomes will be essential to the future of microbial ecological research. Here, we present microTrait , a computational pipeline that infers and distills ecologically relevant traits from microbial genome sequences. microTrait maps a genome sequence into a trait space, including discrete and continuous traits, as well as simple and composite. Traits are inferred from genes and pathways representing energetic, resource acquisition, and stress tolerance mechanisms, while genome-wide signatures are used to infer composite, or life history, traits of microorganisms. This approach is extensible to any microbial habitat, although we provide initial examples of this approach with reference to soil microbiomes.

Karaoz, Ulas↗