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At least 343 records · Page 19

Rational design of a genetically encoded NMR zinc sensor

Elucidating the biochemical roles of the essential metal ion, Zn 2+ , motivates detection strategies that are sensitive, selective, quantitative, and minimally invasive in living systems. Fluorescent probes have identified Zn 2+ in cells but complementary approaches employing nuclear magnetic resonance (NMR) are lacking. Recent studies of maltose binding protein (MBP) using ultrasensitive 129 Xe NMR spectroscopy identified a switchable salt bridge which causes slow xenon exchange and elicits strong hyperpolarized 129 Xe chemical exchange saturation transfer (hyper-CEST) NMR contrast. To engineer the first genetically encoded, NMR-active sensor for Zn 2+ , we converted the MBP salt bridge into a Zn 2+ binding site, while preserving the specific xenon binding cavity. The zinc sensor (ZS) at only 1 μM achieved ‘turn-on’ detection of Zn 2+ with pronounced hyper-CEST contrast. This made it possible to determine different Zn 2+ levels in a biological fluid via hyper-CEST. ZS was responsive to low-micromolar Zn 2+ , only modestly responsive to Cu 2+ , and nonresponsive to other biologically important metal ions, according to hyper-CEST NMR spectroscopy and isothermal titration calorimetry (ITC). Protein X-ray crystallography confirmed the identity of the bound Zn 2+ ion using anomalous scattering: Zn 2+ was coordinated with two histidine side chains and three water molecules. Penta-coordinate Zn 2+ forms a hydrogen-bond-mediated gate that controls the Xe exchange rate. Metal ion binding affinity, 129 Xe NMR chemical shift, and exchange rate are tunable parameters via protein engineering, which highlights the potential to develop proteins as selective metal ion sensors for NMR spectroscopy and imaging.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

An analytic hybrid halo + perturbation theory model for small-scale correlators: baryons, halos, and galaxies

In this work, we update Halo Zeldovich Perturbation Theory (HZPT, [1]), an analytic model for the two-point statistics of dark matter, to describe halo and galaxy clustering, and galaxy-matter cross-correlation on nonlinear scales. The model correcting Zeldovich has an analytic Fourier transform, and therefore is valid in both configuration space and Fourier space. The model is accurate at the 2%-level or less for P_mm (k< 1 h/Mpc), P_hm (k< 1 h/Mpc), P_hh (k< 2 h/Mpc), P gm (k< 1 h/Mpc), P gg (k< 1 h/Mpc), ξ mm (r> 1 Mpc/h), ξ hm (r> 2 Mpc/h), ξ hh (r> 2 Mpc/h), ξ gm (r> 1 Mpc/h), ξ gg (r> 2 Mpc/h), for LRG-like mock galaxies. We show that the HZPT model for matter correlators can account for the effects of a wide range of baryonic feedback models and provide two extended dark matter models which are of 1% (3%) accuracy for k < 10 (8) h/Mpc. We explicitly model the non-perturbative features of halo exclusion for the halo-halo and galaxy-galaxy correlators, as well as the presence of satellites for galaxy-matter and galaxy-galaxy correlation functions. We perform density estimation using N-body simulations and a wide range of HOD galaxy mocks to obtain correlations of model parameters with the cosmological parameters Ω m and σ 8 . HZPT can provide a fast, interpretable, and analytic model for combined-probe analyses of redshift surveys using scales well into the non-linear regime.

79 ASTRONOMY AND ASTROPHYSICS↗

Cdkn1a transcript variant 2 is a marker of aging and cellular senescence

Cellular senescence is a cell fate response characterized by a permanent cell cycle arrest driven primarily the by cell cycle inhibitor and tumor suppressor proteins p16 Ink4a and p21 Cip1/Waf1 . In mice, the p21 Cip1/Waf1 encoding locus, Cdkn1a , is known to generate two transcripts that produce identical proteins, but one of these transcript variants is poorly characterized. We show that the Cdkn1a transcript variant 2, but not the better-studied variant 1, is selectively elevated during natural aging across multiple mouse tissues. Importantly, mouse cells induced to senescence in culture by genotoxic stress (ionizing radiation or doxorubicin) upregulated both transcripts, but with different temporal dynamics: variant 1 responded nearly immediately to genotoxic stress, whereas variant 2 increased much more slowly as cells acquired senescent characteristics. Upon treating mice systemically with doxorubicin, which induces widespread cellular senescence in vivo , variant 2 increased to a larger extent than variant 1. Variant 2 levels were also more sensitive to the senolytic drug ABT-263 in naturally aged mice. Thus, variant 2 is a novel and more sensitive marker than variant 1 or total p21 Cip1/Waf1 protein for assessing the senescent cell burden and clearance in mice.

60 APPLIED LIFE SCIENCES↗

ATS-5 observations of plasma sheet particles before the expansion-phase onset, appendix C.

Behavior of the plasma sheet around its earthward edge during substorms was studied by using high resolution (every 2.6 sec) measurements of proton and electron fluxes by ATS-5. In the injection region near midnight the flux increase at the expansion-phase onset is shown to lag behind the onset of the low-latitude positive bay by several minutes. Depending upon the case, before the above increase (1) the flux stays at a constant level, (2) it gradually increases for some tens of minutes, or (3) it briefly drops to a low level. Difference in the position of the satellite relative to the earthward edge and to the high-latitude boundary of the plasma sheet is suggested as a cause of the above difference in flux variations during the growth phase of substorms. Magnetograms and tables (data) are shown.

Fujii, K.↗

The 50-Year Landsat Collection 2 Archive

The Landsat global consolidated data archive now exceeds 50 years. In recognition of the need for consistently processed data across the Landsat satellite series, the U.S. Geological Survey (USGS) initiated collection-based processing of the entire archive that was processed as Collection 1 in 2016. In preparation for the data from the now successfully launched Landsat 9, the USGS reprocessed the Landsat archive as Collection 2 in 2020. This paper describes the rationale for, and the contents and advancements provided by Collection 2, and highlights the differences between the Collection 1 and Collection 2 products. Notably, the Collection 2 products have improved geolocation and, for the first time, the USGS provides a global inventory of Level 2 surface reflectance and surface temperature products. Also for the first time, the USGS used a commercial cloud computing architecture to efficiently process the archive and enable direct cloud access of the Landsat products. The paper concludes with discussion of likely improvements expected in Collection 3 in preparation for the Landsat Next mission that is planned for launch in the early 2030s.

Christopher J Crawford↗

Observation of Road Salt Aerosol Driving Inland Wintertime Atmospheric Chlorine Chemistry

Inland sources of particulate chloride for atmospheric nitryl chloride (ClNO2) formation remain unknown and unquantified, hindering air quality assessments. Globally each winter, tens of millions of tons of road salt are spread on roadways for deicing. Here, we identify road salt aerosol as the primary chloride aerosol source, accounting for 80–100% of ClNO 2 formation, at an inland urban area in the wintertime. This study provides experimental evidence of the connection between road salt and air quality through the production of this important reservoir for nitrogen oxides and chlorine radicals, which significantly impact atmospheric composition and pollutant fates. A numerical model was employed to quantify the contributions of chloride sources to ClNO 2 production. The traditional method for simulating ClNO 2 considers chloride to be homogeneously distributed across the atmospheric particle population; yet, we show that only a fraction of the particulate surface area contains chloride. Our new single-particle parametrization considers this heterogeneity, dramatically lowering overestimations of ClNO 2 levels that have been routinely reported using the prevailing methods. The identification of road salt as a ClNO 2 source links this common deicing practice to atmospheric composition and air quality in the urban wintertime environment.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Ocean liming effect on a North Atlantic microbial community: changes in composition and rates

The ongoing rise in atmospheric CO 2 levels and the consequent global warming make it increasingly difficult to maintain the global temperature within the 1.5 - 2°C target set by the Paris Agreement. Therefore, strategies to remove carbon dioxide from the atmosphere are being developed, with ocean alkalinity enhancement (OAE) gaining most attention. Within OAE, ocean liming- the addition of quicklime (CaO) or hydrated lime (Ca(OH) 2 )- can not only remove CO 2 from the atmosphere but potentially counteract the effects of ocean acidification. Although quite attractive, these technologies have yet to be tested regarding ecological safety and efficacy. Here we report the impacts of ocean liming on the abundance, composition and extracellular enzymatic activity (EEA) rates of a North Atlantic planktonic community. The results demonstrate that OAE led to a decreased phytoplankton development, mainly diatoms. The bacterial response to OAE was community-specific, with a consistent increase in the relative abundance of the order Oceanospirillales. OAE also led to increased EEA rates, especially within the bacterial community. These findings suggest that while initial effects on phytoplankton may be limited, the specific impacts on bacterial groups suggest that OAE could influence the remineralization of organic matter. If our results apply to other communities, OAE might initially affect marine microbial dynamics, but further studies are needed to determine if these effects are long-term.

16S↗

Mapping forest types in Worcester County, Maryland, using LANDSAT data

The feasibility of mapping Level 2 forest cover types for a county-sized area on Maryland's Eastern Shore was demonstrated. A Level 1 land use/land cover classification was carried out for all of Worcester County as well. A June 1978 LANDSAT scene was utilized in a classification which employed two software packages on different computers (IDIMS on an HP 3000 and ASTEP-II on a Univac 1108). A twelve category classification scheme was devised for the study area. Resulting products include black and white line printer maps, final color coded classification maps, digitally enhanced color imagery and tabulated acreage statistics for all land use and land cover types.

Burtis, J., Jr.↗

Outline for a theory of intelligence

Intelligence is defined as that which produces successful behavior. Intelligence is assumed to result from natural selection. A model is proposed that integrates knowledge from research in both natural and artificial systems. The model consists of a hierarchical system architecture wherein: (1) control bandwidth decreases about an order of magnitude at each higher level, (2) perceptual resolution of spatial and temporal patterns contracts about an order-of-magnitude at each higher level, (3) goals expand in scope and planning horizons expand in space and time about an order-of-magnitude at each higher level, and (4) models of the world and memories of events expand their range in space and time by about an order-of-magnitude at each higher level. At each level, functional modules perform behavior generation (task decomposition planning and execution), world modeling, sensory processing, and value judgment. Sensory feedback control loops are closed at every level.

Albus, James S.↗

Validation of MODIS Aerosol Optical Depth Retrievals over a Tropical Urban Site, Pune, India

In the present paper, MODIS (Terra and Aqua; level 2, collection 5) derived aerosoloptical depths (AODs) are compared with the ground-based measurements obtained from AERONET (level 2.0) and Microtops - II sun-photometer over a tropical urban station, Pune (18 deg 32'N; 73 deg 49'E, 559 m amsl). This is the first ever systematic validation of the MODIS aerosol products over Pune. Analysis of the data indicates that the Terra and Aqua MODIS AOD retrievals at 550 nm have good correlations with the AERONET and Microtops - II sun-photometer AOD measurements. During winter the linear regression correlation coefficients for MODIS products against AERONET measurements are 0.79 for Terra and 0.62 for Aqua; however for premonsoon, the corresponding coefficients are 0.78 and 0.74. Similarly, the linear regression correlation coefficients for Microtops measurements against MODIS products are 0.72 and 0.93 for Terra and Aqua data respectively during winter and are 0.78 and 0.75 during pre-monsoon. On yearly basis in 2008-2009, correlation coefficients for MODIS products against AERONET measurements are 0.80 and 0.78 for Terra and Aqua respectively while the corresponding coefficients are 0.70 and 0.73 during 2009-2010. The regressed intercepts with MODIS vs. AERONET are 0.09 for Terra and 0.05 for Aqua during winter whereas their values are 0.04 and 0.07 during pre-monsoon. However, MODIS AODs are found to underestimate during winter and overestimate during pre-monsoon with respect to AERONET and Microtops measurements having slopes 0.63 (Terra) and 0.74 (Aqua) during winter and 0.97 (Terra) and 0.94 (Aqua) during pre-monsoon. Wavelength dependency of Single Scattering Albedo (SSA) shows presence of absorbing and scattering aerosol particles. For winter, SSA decreases with wavelength with the values 0.86 +/- 0.03 at 440 nm and 0.82 +/- 0.04 at 1020nm. In pre-monsoon, it increases with wavelength (SSA is 0.87 +/- 0.02 at 440nm; and 0.88 +/-0.04 at 1020 nm).

More, Sanjay↗

A phytophotonic approach to enhanced photosynthesis

Photosynthesis is the dominant biotic carbon sink on earth and hence presents an opportunity for enhanced sequestration of CO 2 . If the average net carbon fixation efficiency of terrestrial plants could be increased by 3.3%, all anthropogenic CO 2 accumulating in the atmosphere could instead be reduced and incorporated into terrestrial biomass. Plants make inefficient use of the overly abundant sunlight available to them, a result of having evolved to be competitive and survive highly dynamic environmental conditions rather than maximize photosynthetic productivity. We explore herein a phytophotonic approach to enhanced photosynthesis, whereby sunlight is redistributed by means of luminescent or persistent luminescent (PersL) materials. Phytophotonics has potential at varied scales, ranging from photobioreactors to greenhouses all the way to crops in the field, the latter having the potential to impact planetary CO 2 levels. The approach is three-fold: a spectral redistribution to relieve high-light-stress at the top surface of leaves and increasingly drive photosynthesis deeper in leaves and canopies; a minute-scale temporal redistribution to bridge periods of intermittent shade and reduce shock associated with variable light conditions; and a multiple-hour temporal redistribution to shift a fraction of high-intensity midday lighting to evening hours. Based on simulations of photoluminescent materials and light quality experiments with a model algal system, it is shown that while lengthening daylight hours will require significant improvements in PersL materials, the other two approaches show more immediate promise. We demonstrate a means of concentrating PersL light from SrAl 2 O 4 :Eu,Dy, approaching levels needed to effectively bridge periods of natural shade, and outline the scientific questions and technical hurdles remaining to realize the benefits of the proposed spectral shift.

59 BASIC BIOLOGICAL SCIENCES↗

Annoyance response to simulated advanced turboprop aircraft interior noise containing tonal beats

A study is done to investigate the effects on subjective annoyance of simulated advanced turboprop (ATP) interior noise environments containing tonal beats. The simulated environments consisted of low-frequency tones superimposed on a turbulent-boundary-layer noise spectrum. The variables used in the study included propeller tone frequency (100 to 250 Hz), propeller tone levels (84 to 105 dB), and tonal beat frequency (0 to 1.0 Hz). Results indicated that propeller tones within the simulated ATP environment resulted in increased annoyance response that was fully predictable in terms of the increase in overall sound pressure level due to the tones. Implications for ATP aircraft include the following: (1) the interior noise environment with propeller tones is more annoying than an environment without tones if the tone is present at a level sufficient to increase the overall sound pressure level; (2) the increased annoyance due to the fundamental propeller tone frequency without harmonics is predictable from the overall sound pressure level; and (3) no additional noise penalty due to the perception of single discrete-frequency tones and/or beats was observed.

Leatherwood, Jack D.↗

TES Level 1 Algorithms: Interferogram Processing, Geolocation, Radiometric, and Spectral Calibration

The Tropospheric Emission Spectrometer (TES) on the Earth Observing System (EOS) Aura satellite measures the infrared radiance emitted by the Earth's surface and atmosphere using Fourier transform spectrometry. The measured interferograms are converted into geolocated, calibrated radiance spectra by the L1 (Level 1) processing, and are the inputs to L2 (Level 2) retrievals of atmospheric parameters, such as vertical profiles of trace gas abundance. We describe the algorithmic components of TES Level 1 processing, giving examples of the intermediate results and diagnostics that are necessary for creating TES L1 products. An assessment of noise-equivalent spectral radiance levels and current systematic errors is provided. As an initial validation of our spectral radiances, TES data are compared to the Atmospheric Infrared Sounder (AIRS) (on EOS Aqua), after accounting for spectral resolution differences by applying the AIRS spectral response function to the TES spectra. For the TES L1 nadir data products currently available, the agreement with AIRS is 1 K or better.

infrared remote sensing↗

Extreme Ultraviolet Variability Experiment (EVE) on the Solar Dynamics Observatory (SDO): Overview of Science Objectives, Instrument Design, Data Products, and Model Developments

The highly variable solar extreme ultraviolet (EUV) radiation is the major energy input to the Earth's upper atmosphere, strongly impacting the geospace environment, affecting satellite operations, communications, and navigation. The Extreme ultraviolet Variability Experiment (EVE) onboard the NASA Solar Dynamics Observatory (SDO) will measure the solar EUV irradiance from 0.1 to 105 nm with unprecedented spectral resolution (0.1 nm), temporal cadence (ten seconds), and accuracy (20%). EVE includes several irradiance instruments: The Multiple EUV Grating Spectrographs (MEGS)-A is a grazingincidence spectrograph that measures the solar EUV irradiance in the 5 to 37 nm range with 0.1-nm resolution, and the MEGS-B is a normal-incidence, dual-pass spectrograph that measures the solar EUV irradiance in the 35 to 105 nm range with 0.1-nm resolution. To provide MEGS in-flight calibration, the EUV SpectroPhotometer (ESP) measures the solar EUV irradiance in broadbands between 0.1 and 39 nm, and a MEGS-Photometer measures the Sun s bright hydrogen emission at 121.6 nm. The EVE data products include a near real-time space-weather product (Level 0C), which provides the solar EUV irradiance in specific bands and also spectra in 0.1-nm intervals with a cadence of one minute and with a time delay of less than 15 minutes. The EVE higher-level products are Level 2 with the solar EUV irradiance at higher time cadence (0.25 seconds for photometers and ten seconds for spectrographs) and Level 3 with averages of the solar irradiance over a day and over each one-hour period. The EVE team also plans to advance existing models of solar EUV irradiance and to operationally use the EVE measurements in models of Earth s ionosphere and thermosphere. Improved understanding of the evolution of solar flares and extending the various models to incorporate solar flare events are high priorities for the EVE team.

Woods, T. N.↗

Metabolic Profiling Reveals Biochemical Pathways Responsible for Eelgrass Response to Elevated CO2 and Temperature

Abstract As CO 2 levels in Earth’s atmosphere and oceans steadily rise, varying organismal responses may produce ecological losers and winners. Increased ocean CO 2 can enhance seagrass productivity and thermal tolerance, providing some compensation for climate warming. However, the metabolic shifts driving the positive response to elevated CO 2 by these important ecosystem engineers remain unknown. We analyzed whole-plant performance and metabolic profiles of two geographically distinct eelgrass ( Zostera marina L.) populations in response to CO 2 enrichment. In addition to enhancing overall plant size, growth and survival, CO 2 enrichment increased the abundance of Calvin Cycle and nitrogen assimilation metabolites while suppressing the abundance of stress-related metabolites. Overall metabolome differences between populations suggest that some eelgrass phenotypes may be better suited than others to cope with an increasingly hot and sour sea. Our results suggest that seagrass populations will respond variably, but overall positively, to increasing CO 2 concentrations, generating negative feedbacks to climate change.

59 BASIC BIOLOGICAL SCIENCES↗

Role of Ca++ in Shoot Gravitropism

A cornerstone in the argument that Ca(2+) levels may regulate growth is the finding the EGTA promotes straight growth. The usual explanation for these results is that Ca(2+) chelation from cell walls results in wall loosening and thus accelerated straight growth. The ability of frozen-thawed Avena coleoptile tissue (subjected to 15g tension) to extend in response to EGTA and Quin II was examined. The EGTA when applied in weakly buffered (i.e., 0.1mM) neutral solutions initiates rapid extension. When the buffer strength is increased, similar concentrations of EGTA produce no growth response. This implies when EGTA liberated protons are released upon Ca(2+) chelation they can either initiate acid growth (low buffer conditions) or if consumed (high buffer conditions) have no effect. Thus Ca(2+) chelation in itself apparently does not result in straight growth.

Rayle, D. L.↗

Experimental Results of a Rapidly Cycled Temperature Swing Adsorption Pump in a Terrestrial Environment

To improve the increasing CO 2 levels on Earth, technology for carbon capture and utilization must be efficient and cost effective. One major contributor of atmospheric CO 2 is post-combustion flue gas, which can contain up to 20% CO 2 . Scrubbing this CO 2 could reduce the environmental impact of this common industrial process. In off-Earth environments, capturing and utilizing CO 2 from space resources is useful for crewed spaceflight life support. Specifically, the Bosch process, which produces water and carbon powder by reacting CO 2 and hydrogen, is a possible in-situ resource utilization (ISRU) architecture for the Moon and Mars. The Rapid Cycle Temperature Swing Adsorption (RC-TSA) pump is an innovative technology designed to capture CO 2 efficiently. The RC-TSA leverages a stacked plate geometry to cycle multiple zeolite-coated beds. The thin layers allow for rapid heat transfer of the zeolite coating, which improves performance over previously tested pump designs. The design is favorable for scalability and manufacturability, which are forward work. Initial testing of the sorption pump using a simulated flue gas environment shows favorable breakthrough capacities and reduced cycle times. Results show promise for on- and off-Earth applications, such as a Martian surface and crewed spaceflight environments.

adsorption pump↗

Ultraviolet H 2 luminescence in molecular clouds induced by cosmic rays

Context. Galactic cosmic rays (CRs) play a crucial role in ionisation, dissociation, and excitation processes within dense cloud regions where UV radiation is absorbed by dust grains and gas species. CRs regulate the abundance of ions and radicals, leading to the formation of more and more complex molecular species, and determine the charge distribution on dust grains. A quantitative analysis of these effects is essential for understanding the dynamical and chemical evolution of star-forming regions. Aims. The CR-induced photon flux has a significant impact on the evolution of the dense molecular medium in its gas and dust components. This study evaluates the flux of UV photons generated by CRs to calculate the photon-induced dissociation and ionisation rates of a vast number of atomic and molecular species, as well as the integrated UV photon flux. Methods. To achieve these goals, we took advantage of recent developments in the determination of the spectra of secondary electrons, in the calculation of state-resolved excitation cross sections of H 2 by electron impact, and of photodissociation and photoionisation cross sections. Results. We calculated the H 2 level population of each rovibrational level of the X, B, C, B′, D, B″, D′, and a states. We then computed the UV photon spectrum of H 2 in its line and continuum components between 72 and 700 nm, with unprecedented accuracy, as a function of the CR spectrum incident on a molecular cloud, the H 2 column density, the isomeric H 2 composition, and the dust properties. The resulting photodissociation and photoionisation rates are, on average, lower than previous determinations by a factor of about 2, with deviations of up to a factor of 5 for the photodissociation of species such as AlH, C 2 H 2 , C 2 H 3 , C 3 H 3 , LiH, N 2 , NaCl, NaH, O 2 + , S2, SiH, l-C 4 , and l-C 5 H. A special focus is given to the photoionisation rates of H 2 , HF, and N 2 , as well as to the photodissociation of H 2 , which we find to be orders of magnitude higher than previous estimates. We give parameterisations for both the photorates and the integrated UV photon flux as a function of the CR ionisation rate, which implicitly depends on the H 2 column density, as well as the dust properties.

79 ASTRONOMY AND ASTROPHYSICS↗