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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 343 records · Page 19
All sourcesNASA NTRSDOE OSTI
DOE OSTI2026

Dataset for Top Model Decision Tree: Selecting Segmentation Models for Reliable Quantitative Analysis in Low- and Ultralow-Dose CryoEM

Motivation Multiple deep learning model architectures can be used to segment bacterial membranes in cryoEM images. However, an AI-based tool advancement is often presented with only a single segmentation model for broad use, and this single model may show inconsistent results across datasets from different users. Here, we present the Top Model Decision Tree, a model screening framework to screen for the best model to generate bacterial inner and outer membrane masks based on user priorities. We use pre-trained segmentation models from YOLOv11, YOLO26, U-Net, Detectron2 and SAM3 fine-tuned on bacterial inner and outer membranes imaged with cryoEM. Run the Framework This notebook must be opened in Google Colab. Mount Google Drive and run with a GPU-based runtime. Open the notebook and follow steps to git clone in folders and files within this repository. There will be a repeating top_model_decision_tree.ipynb (notebook clone) that will not be used. Save your .png binary mask files and .csv table outputs within your Google Drive or download before closing the notebook. The models and all analysis/training scripts are available at [GitHub: https://github.com/Lynnicia/CryoEM_membranes_top_model_decision_tree and https://github.com/Sireesiru/Semantic-Segmentation-of-bacterial-cell-envelope-using-U-Nets.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Data from "A Bayesian Record Linkage Approach to Applications in Tree Demography Using Overlapping LiDAR Scans"

Processed LiDAR data and environmental covariates from 2015 and 2019 LiDAR scans in the Vicinity of Snodgrass Mountain (Western Colorado, USA), in a geographic subset used in primary analysis for the research paper.This package contains LiDAR-derived canopy height maps for 2015 and 2019, crown polygons derived from the height maps using a segmentation algorithm, and environmental covariates supporting the model of forest growth. Source datasets include August 2015 and August 2019 discrete-return LiDAR point clouds collected by Quantum Geospatial for terrain mapping purposes on behalf of the Colorado Hazard Mapping Program and the Colorado Water Conservation Board. Both datasets adhere to the USGS QL2 quality standard. The point cloud data were processed using the R package lidR to generate a canopy height model representing maximum vegetation height above the ground surface, using a pit-free algorithm.This dataset was compiled to assess how spatial patterns of tree growth in montane and subalpine forests are influenced by water and energy availability. Understanding these growth patterns can provide insight into forest dynamics in the Southern Rocky Mountains under changing climatic conditions.This dataset contains .tif, .csv, and .txt files. This dataset additionally includes a file-level metadata (flmd.csv) file that lists each file contained in the dataset with associated metadata; and a data dictionary (dd.csv) file that contains column/row headers used throughout the files along with a definition, units, and data type.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

SPRUCE Bud Cold Hardiness of Trees and Shrubs in Experimental Plots, Marcell Experimental Forest, Minnesota, 2021-2025

This dataset contains bud cold hardiness measurements from the Spruce and Peatland Responses Under Changing Environments (SPRUCE) experimental site (Hanson et al, 2017) within the Marcell Experimental Forest in northern Minnesota, USA. Cold hardiness was quantified as the temperature at which low temperature exotherms (LTEs) were identified (i.e., the temperature at which supercooled water within a bud freezes) measured by differential thermal analysis (DTA). Buds were sampled at semi-regular intervals from September 2021 through May 2025 (2021-09-25 to 2025-05-21) across four seasons (2021-2022 through 2024-2025) for four co-occurring boreal peatland tree and shrub species: Picea mariana (PIMA), Larix laricina (LALA), Rhododendron groenlandicum (RHGR), and Chamaedaphne calyculata (CHCA). Samples were collected across the experiment's warming gradient (ambient to +9 degrees Celsius (C)) and pooled by species within each enclosure. These data were used to assess the species- and season-specific effects of experimental warming on cold hardiness and cold damage risk in boreal peatland vegetation (Campos-Arguedas et al, accepted). This dataset contains one data file in comma-separate values (*.csv) format. Additional metadata are provided: a data dictionary and a file-level metadata file in comma-separate values (*.csv) format and a user guide in PDF (*.pdf) format.

Chamaedaphne calyculata↗
DOE OSTI2021

Functional trait data for 11 canopy tree species in the control and drought treatments at AU-DRO (2018-2019)

This data package contains foliar abscisic acid levels, xylem anatomy, foliar d13C, leaf mass per area, leaf water potentials, non-structural carbohydrates, and pressure volume curve traits for 11 canopy tree species in the control and drought treatments at the Daintree Rainforest Observatory in Queensland, Australia (AU-DRO). Data were collected at the end of the dry season (Nov 2018) and end of the wet season (May 2019). The species included in the dataset are: Castanospermum australe, Cleistanthus myrianthus, Cryptocarya mackinnoniana, Dysoxylum papuanum, Elaeocarpus angustifolius (Elaeocarpus grandis), Endiandra microneura, Mallotus paniculatus, Myristica globosa, Rockinghamia angustifolia, Synima cordierorum, Syzygium spp. These data correspond to the previously archived dataset “Leaf gas exchange data, Nov 2018 and May 2019, Daintree Rainforest, Australia. NGEE-Tropics Data Archive” (DOI: 10.15486/ngt/1773854).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

AmeriFlux US-xTR NEON Treehaven (TREE)

This is the AmeriFlux version of the carbon flux data for the site US-xTR NEON Treehaven (TREE). Site Description - Treehaven, situated between Rhinelander and Tomahawk, WI, is one of two relocatable sites located in NEON’s Great Lakes Domain. The Treehaven property spans 1400 acres and is owned and operated by the University of Wisconsin-Stevens Point (UWSP), College of Natural Resources. UWSP uses the property and conference center for summer field techniques courses but welcomes other educators, researchers, and the public to use and enjoy their forests, trails, and facility.

Network), NEON (National Ecological Observatory↗
DOE OSTI2025

AmeriFlux BR-ITA MataFLUX: Multi-species tree restoration planting

This is the AmeriFlux version of the carbon flux data for the site BR-ITA MataFLUX: Multi-species tree restoration planting. Site Description - This tower is situated at the Itatinga Research Station (USP-ESALQ), located within the Brazilian Atlantic Forest. The station focuses on promoting forest research and features a landscape consisting of eucalyptus plantations and native species restoration areas.

Guillemot, Joannès [Cirad]↗
DOE OSTI2021

Morphological and molecular characterization of Paratylenchus beltsvillensis n. sp. (Tylenchida: Paratylenchidae) from the rhizosphere of pine tree ( Pinus virginiana Mill) in Maryland, USA

The pin nematode, Paratylechus beltsvillensis sp. collected from rhizosphere soil of a Virginia pine tree (Pinus virginiana Mill) growing in Little Paint Branch Park, Beltsville, Prince George’s County, Maryland, USA, is described and illustrated along with light and scanning electron photomicrographs. Females, males, and juveniles of this new species were recovered from soil samples using the sugar centrifugal flotation and Baermann funnel extraction methods. Morphologically, females are short, body length ranging from 245 to 267 μm, stylet from 70 to 75 μm long with anchor shaped knobs, vulva located at 70–73% and small vulval flap, spermatheca large, and ovoid filled with sperms. Lateral field with three incisures, of which the outer two are prominent. Tail slender, having a rounded tail terminus. Males without stylet and have a degenerated pharynx, spicules = 17–20 µm and gubernaculum = 5.0–5.5 µm. Both morphological observations and molecular analysis of ITS and partial 28S ribosomal RNA gene sequences indicated that the specimens collected from the soil at Beltsville Park from rhizosphere soil samples from Virginia pine represents a new pin nematode species.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Statistics of Green's functions on a disordered Cayley tree and the validity of forward scattering approximation

The accuracy of the forward scattering approximation for two-point Green's functions of the Anderson localization model on the Cayley tree is studied. A relationship between the moments of the Green's function and the largest eigenvalue of the linearized transfer-matrix equation is proved in the framework of the supersymmetric functional-integral method. The new large-disorder approximation for this eigenvalue is derived and its accuracy is established. Using this approximation the probability distribution of the two-point Green's function is found and compared with that in the forward scattering approximation (FSA). It is shown that FSA overestimates the role of resonances and thus the probability for the Green's function to be significantly larger than its typical value. The error of FSA increases with increasing the distance between points in a two-point Green's function.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2024

Lorentzian contours for tree-level string amplitudes

We engineer compact contours on the moduli spaces of genus-zero Riemann surfaces that achieve analytic continuation from Euclidean to Lorentzian worldsheets. These generalized Pochhammer contours are based on the combinatorics of associahedra and make the analytic properties of tree-level amplitudes entirely manifest for any number and type of external strings. We use them in practice to perform first numerical computations of open and closed string amplitudes directly in the physical kinematics for n=4,5,6,7,8,9 n = 4 , 5 , 6 , 7 , 8 , 9 . We provide a code that allows anyone to do such computations.

Physics↗
DOE OSTI2022

Many-gluon tree amplitudes on modern GPUs: A case study for novel event generators

The compute efficiency of Monte-Carlo event generators for the Large Hadron Collider is expected to become a major bottleneck for simulations in the high-luminosity phase. Aiming at the development of a full-fledged generator for modern GPUs, we study the performance of various recursive strategies to compute multi-gluon tree-level amplitudes. We investigate the scaling of the algorithms on both CPU and GPU hardware. Finally, we provide practical recommendations as well as baseline implementations for the development of future simulation programs. The GPU implementations can be found at: https://www.gitlab.com/ebothmann/blockgen-archive.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

Acoustic and Genetic Approaches for Informing Population Status and Trends of Migratory Tree Bats

Through the systematic collection of acoustic and genetic data over time, a weight of evidence may be built that will support an improved understanding around population stability for migratory tree-roosting bat species. This information can be leveraged to infer the influence stressors have on population stability, and subsequently determine the level of response necessary to sustain healthy populations. Here, we synthesize the existing information related to bat population status and trends, uncertainty regarding existing estimates, current and novel methods for assessing population-level data, and recommendations for near-term and long-term studies to reduce uncertainty surrounding population data. Although this report focuses on wind energy development and bats, the methods used are broadly applicable and are being implemented by other industries, academia, government agencies, and nongovernmental organizations. Through efforts outside of the wind energy industry, it is likely we will gain a better understanding of bat populations, but the pace of data collection and analysis will be expedited by further participation by the wind energy industry. In return, the wind energy industry will benefit by contributing to these efforts either by 1) discovering that the population status of the species of interest is stable or growing, which may prevent the need for listing one or more species; or 2) recognizing the population status of certain species is in decline and implementing relatively moderate measures to reduce wind turbine-related mortality in the near term to stave off more stringent measures, which may be necessary if action is delayed.

17 WIND ENERGY↗
DOE OSTI2024

Understanding spatial and temporal drivers of variation in tree hydraulic processes and their consequences for climate feedbacks (Final Technical Report)

This is the final technical report from the first phase of a project that changed institutions. The grant was titled “Understanding spatial and temporal drivers of variation in tree hydraulic processes and their consequences for climate feedbacks.” The overall objectives of this project were to (1) provide model‐compatible datasets of key plant hydraulic traits and status for model evaluation, parameterization and validation and (2) use these data to pinpoint ecosystem responses to a changing hydroclimate by addressing both long‐term climatic drying and episodic extreme droughts. We planned to address the objectives with three research activities to quantify plant responses to chronic water stress and episodic drought: (1) generate high frequency observations of soil and plant hydraulic data across different landscape positions at multiple sites, (2) quantify plant hydraulic trait plasticity in response to experimental soil moisture reduction in situ in two central hardwood forests, and (3) simulate the carbon consequences of incorporating plant hydrodynamics and plant acclimation to water stress in the DOE‐sponsored plant hydrodynamics model FATES‐HYDRO. As of the transfer of this project to another institution, we had made substantial progress on activities 1 and 2, and started activity 3.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2026

Tree Tops Site - Halo Streamline Scanning Lidar High-Frequency Wind Profile / Derived data

This dataset contains wind profiles retrieved from 6-beam Velocity Azimuth Display (VAD) scans done by a Streamline XR Doppler Lidar operated by Lawrence Livermore National Laboratory and deployed at the Tree Tops site (1.5 km South-West of MLBS site). The wind components (expressed as zonal, meridional and vertical) are retrieved through the algorithm of Paschke et al. (2015). The quality control of the radial wind speed is performed following the algorithm of Foken et al. (2004).

17 WIND ENERGY↗
DOE OSTI2025

Tree Tops Halo scanning Lidar / Raw Data

These data are collected by a Streamline XR Doppler Lidar operated by Lawrence Livermore National Laboratory and deployed at the Tree Tops site (1.5 km South-West of MLBS site).

17 WIND ENERGY↗
DOE OSTI2020

Functional Imaging of Microbial Interactions With Tree Roots Using a Microfluidics Setup

Coupling microfluidics with microscopy has emerged as a powerful approach to study at cellular resolution the dynamics in plant physiology and root-microbe interactions (RMIs). Most devices have been designed to study the model plant Arabidopsis thaliana at higher throughput than conventional methods. However, there is a need for microfluidic devices which enable in vivo studies of root development and RMIs in woody plants. Here, we developed the RMI-chip, a simple microfluidic setup in which Populus tremuloides (aspen tree) seedlings can grow for over a month, allowing continuous microscopic observation of interactions between live roots and rhizobacteria. We find that the colonization of growing aspen roots by Pseudomonas fluorescens in the RMI-chip involves dynamic biofilm formation and dispersal, in keeping with previous observations in a different experimental set-up. Also, we find that whole-cell biosensors based on the rhizobacterium Bacillus subtilis can be used to monitor compositional changes in the rhizosphere but that the application of these biosensors is limited by their efficiency at colonizing aspen roots and persisting. These results indicate that functional imaging of dynamic root-bacteria interactions in the RMI-chip requires careful matching between the host plant and the bacterial root colonizer.

59 BASIC BIOLOGICAL SCIENCES↗