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At least 37 records · Page 2

Extended kinetic lattice grand canonical Monte Carlo simulation method for transport of multicomponent ion mixtures through a model nanopore system

Abstract An extended version of the original kinetic lattice grand canonical Monte Carlo simulation method combined with mean field theory (KLGCMC/MF) ( J. Chem. Phys. 2007 , 127, 024706) is presented for the study of transport of multicomponent ion mixtures through a model nanopore. Comparison of the extended KLGCMC/MF (eKLGCMC/MF) simulation results with Poisson–Nernst–Planck (PNP) calculations is also made to confirm the validity of the extended simulation approach. Unlike the original version of KLGCMC/MF simulation method that treats only a binary ionic solution with one cation and one anion species, this extended version can deal with a system that includes ternary ion mixtures. A diffusion probability algorithm is also added to the extended version of the simulation method to describe the inhomogeneous diffusivity of ions that is often observed in the ion permeation through nanopores. Both Legendre and Chebyshev polynomials of the second kind were tested as a basis set for the basis set expansion (BSE) method with which to calculate the reaction field energy in the eKLGCMC/MF simulation. It turned out that the Legendre polynomials perform better than the Chebyshev polynomials, and as a result, the Legendre polynomials were implemented in the current version of eKLGCMC/MF simulation algorithm. The presented eKLGCMC/MF simulation method with new features finds its potential applications in nanopore systems where the correlation between ion species with the same sign of charges plays a key role such as oscillating ion currents or anomalous mole fraction effects.

Choi, Inhyeok↗

Analytical theory for artificial satellites

A theory for generating segmented ephemerides is discussed as a means for fast generation and simple retrieval of nominal orbit data. Over a succession of finite intervals of time, the orbit is represented by a best approximation expressed by Chebyshev polynomials. Storage of coefficients tables for Chebyshev polynomials is seen as a method to reduce data and decrease transmission costs. A general algorithm was constructed and computer programs were designed. The possibility of storing an ephemeris for a few days in the on-board computer, or in microprocessors attached to the data collectors is suggested.

Deprit, A.↗

Meshless Local Petrov-Galerkin (MLPG) Method with Orthogonal Polynomials for Euler-Bernoulli Beam Problems

In this paper, the feasibility of orthogonal polynomials in the meshless local Petrov Galerkin method (MLPG) method is studied. The orthogonal polynomials, Chebyshev and Legendre polynomials, are used in this MLPG method as trial functions. The test functions used were power functions with smooth derivatives at their ends. The performance of these methods is studied by applying these methods to Euler-Bernoulli beam problems. The MLPG-Galerkin and Legendre methods passed all the patch tests for simple beam problems. Next the formulations are tested on complex beam problems such as beams with partial loadings and continuous beam problems. Problems with load discontinuities and additional supports require special attention. Near discontinuities, judicious choice of number of nodes and nodal placements are needed to obtain accurate deflections, slopes, moments and shear forces. As polynomial functions are used, the large number of nodes can create a transformation matrix that is ill-conditioned, resulting in problems with the inversion of the matrix. The conditioning worsens as the number of nodes are increased beyond 20. Quadruple precision was needed for models to obtain accurate solutions. Even with quadruple precision the accuracy of the method suffers as the number of nodes is increased beyond 20. This appears to be a drawback of the MLPG-Chebyshev and MLPG-Legendre methods.

Raju, Ivatury S.↗

Davis Computational Spectroscopy Workflow—From Structure to Spectra

Here, we describe an automated workflow that connects a series of atomic simulation tools to investigate the relationship between atomic structure, lattice dynamics, materials properties, and inelastic neutron scattering (INS) spectra. Starting from the atomic simulation environment (ASE) as an interface, we demonstrate the use of a selection of calculators, including density functional theory (DFT) and density functional tight binding (DFTB), to optimize the structures and calculate interatomic force constants. We present the use of our workflow to compute the phonon frequencies and eigenvectors, which are required to accurately simulate the INS spectra in crystalline solids like diamond and graphite as well as molecular solids like rubrene. We have also implemented a machine-learning force field based on Chebyshev polynomials called the Chebyshev interaction model for efficient simulation (ChIMES) to improve the accuracy of the DFTB simulations. We then explore the transferability of our DFTB/ChIMES models by comparing simulations derived from different training sets. We show that DFTB/ChIMES demonstrates ~100× reduction in computational expense while retaining most of the accuracy of DFT as well as yielding high accuracy for different materials outside of our training sets. The DFTB/ChIMES method within the workflow expands the possibilities to use simulations to accurately predict materials properties of increasingly complex structures that would be unfeasible with ab initio methods.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Spectral function for 4 He using the Chebyshev expansion in coupled-cluster theory

Here, we compute spectral function for 4 He by combining coupled-cluster theory with an expansion of integral transforms into Chebyshev polynomials. Our method allows us to estimate the uncertainty of spectral reconstruction. The properties of the Chebyshev polynomials make the procedure numerically stable and considerably lower in memory usage than the typically employed Lanczos algorithm. We benchmark our predictions with other calculations in the literature and with electron-scattering data in the quasi-elastic peak. The spectral function formalism allows one to extend ab initio lepton-nucleus cross sections into the relativistic regime. This makes it a promising tool for modeling this process at higher-energy transfers. The results we present open the door for studies of heavier nuclei, important for the neutrino oscillation programs.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Prediction of compliant wall drag reduction, part 1

Computer codes developed to test Bushnell's compliant wall drag reduction model are discussed. One code computes the evolution of mean velocity profiles during the period between bursts as forced by an imposed large-scale pressure pulse due to earlier bursts. Another code computes the local stability characteristics of these computed profiles. The programs use Chebyshev polynomials to resolve the normal boundary layer (y) direction and a staggered grid of mesh points to resolve the x direction. Typically, 257 grid points and 33 Chebyshev polynomials are used in the computations.

Orszag, S. A.↗

A high-order time-parallel scheme for solving wave propagation problems via the direct construction of an approximate time-evolution operator

Our manuscript demonstrates a technique for efficiently solving the classical wave equation, the shallow water equations, and, more generally, equations of the form ∂u/∂t=Lu∂u/∂t=Lu, where LL is a skew-Hermitian differential operator. The idea is to explicitly construct an approximation to the time-evolution operator exp(τL)exp(τL) for a relatively large time-step ττ. Recently developed techniques for approximating oscillatory scalar functions by rational functions, and accelerated algorithms for computing functions of discretized differential operators are exploited. Principal advantages of the proposed method include: stability even for large time-steps, the possibility to parallelize in time over many characteristic wavelengths and large speed-ups over existing methods in situations where simulation over long times are required. Numerical examples involving the 2D rotating shallow water equations and the 2D wave equation in an inhomogenous medium are presented, and the method is compared to the 4th order Runge–Kutta (RK4) method and to the use of Chebyshev polynomials. The new method achieved high accuracy over long-time intervals, and with speeds that are orders of magnitude faster than both RK4 and the use of Chebyshev polynomials.

97 MATHEMATICS AND COMPUTING↗

A sparse matrix–vector multiplication based algorithm for accurate density matrix computations on systems of millions of atoms

Here we present an efficient sparse matrix–vector (SpMV) based method to compute the density matrix P from a given Hamiltonian in electronic structure computations. Our method is a hybrid approach based on Chebyshev–Jackson approximation theory and matrix purification methods like the second order spectral projection purification (SP2). Recent methods to compute the density matrix scale as O(N) in the number of floating point operations but are accompanied by large memory and communication overhead, and they are based on iterative use of the sparse matrix–matrix multiplication kernel (SpGEMM), which is known to be computationally irregular. In addition to irregularity in the sparse Hamiltonian H, the nonzero structure of intermediate estimates of P depends on products of H and evolves over the course of computation. On the other hand, an expansion of the density matrix P in terms of Chebyshev polynomials is straightforward and SpMV based; however, the resulting density matrix may not satisfy the required constraints exactly. In this paper, we analyze the strengths and weaknesses of the Chebyshev–Jackson polynomials and the second order spectral projection purification (SP2) method, and propose to combine them so that the accurate density matrix can be computed using the SpMV computational kernel only, and without having to store the density matrix P. Our method accomplishes these objectives by using the Chebyshev polynomial estimate as the initial guess for SP2, which is followed by using sparse matrix–vector multiplications (SpMVs) to replicate the behavior of the SP2 algorithm for purification. We demonstrate the method on a tight-binding model system of an oxide material containing more than 3 million atoms. In addition, we also present the predicted behavior of our method when applied to near-metallic Hamiltonians with a wide energy spectrum.

42 ENGINEERING↗

Jig Twist Optimization of Mach 0.8 Transonic Truss-Braced Wing Aircraft

This paper presents a jig twist optimization study of Mach 0.8 Transonic Truss-Braced Wing (TTBW) aircraft using FUN3D. The solver has been validated against wind tunnel test data. An aeroelastic model deformation correction method is developed for the wind tunnel model to improve the validation. The flight condition corresponding to Mach 0.8 and design lift coefficient 0.695 is selected for the TTBW aircraft jig twist optimization to reduce the drag coefficient. The static aeroelastic simulation module in FUN3D is used for the aeroelastic simulation. Three different orders of the Chebyshev polynomials are used as shape function to represent the variations of the jig twist distribution along the wing span. The preliminary optimization results show that the Mach 0.8 TTBW aircraft with the optimized jig twist achieves a drag reduction of about 5.7 counts at the design condition when 5 𝑡ℎ order Chebyshev polynomials are used as shape function.

TTBW↗

Boundary layer stability calculations

In this paper numerical calculation of the spatial stability of disturbances in the parallel and nonparallel Blasius boundary layers is considered. Chebyshev polynomials are used for discretization. The problem with the boundary condition at infinity is overcome, and the resulting nonlinear matrix eigenvalue problem is attacked directly. The secondary eigenvalue problem for three-dimensional disturbances is shown to be uniformly stable, and particular solutions of this problem generated by the Orr-Sommerfeld equation are shown. A numerical solution of the nonparallel problem is considered using Chebyshev polynomials. The matrix equations are analyzed directly and the problem of uniqueness of the nonparallel correction is settled by careful application of the Fredholm alternative. Nonparallel corrections to the streamwise eigenfunction are shown.

Bridges, Thomas J.↗

Bounds for Horner sums

Estimation of absolute values of Horner sum, using Chebyshev polynomials as maximizing polynomials

POLYNOMIAL↗

Planetary ephemerides approximation for radar astronomy

The planetary ephemerides approximation for radar astronomy is discussed, and, in particular, the effect of this approximation on the performance of the programmable local oscillator (PLO) used in Goldstone Solar System Radar is presented. Four different approaches are considered and it is shown that the Gram polynomials outperform the commonly used technique based on Chebyshev polynomials. These methods are used to analyze the mean square, the phase error, and the frequency tracking error in the presence of the worst case Doppler shift that one may encounter within the solar system. It is shown that in the worst case the phase error is under one degree and the frequency tracking error less than one hertz when the frequency to the PLO is updated every millisecond.

Sadr, R.↗

To the Theory of C{sub 0}-Operator Orthogonal Polynomials

Operator orthogonal polynomials are considered whose arguments are generators of strongly continuous semigroups of transformations of class C{sub 0} acting in a Banach space. Earlier such polynomials were considered by the authors in the case of the Chebyshev polynomials of the first and second kind. In this paper, more general classes of operator orthogonal polynomials are considered, which include the Jacobi and Aptekarev polynomials. Integral representations of operator fractional-rational functions and also of Bessel operator-valued functions of an imaginary argument are presented.

97 MATHEMATICS AND COMPUTING↗

A GENERAL FRAMEWORK FOR ENHANCING SPARSITY OF GENERALIZED POLYNOMIAL CHAOS EXPANSIONS

Compressive sensing has become a powerful addition to uncertainty quantification when only limited data are available. In this paper, we provide a general framework to enhance the sparsity of the representation of uncertainty in the form of generalized polynomial chaos expansion. We use an alternating direction method to identify new sets of random variables through iterative rotations so the new representation of the uncertainty is sparser. Consequently, we increase both the efficiency and accuracy of the compressive-sensing-based uncertainty quantification method. We demonstrate that the previously developed iterative method to enhance the sparsity of Hermite polynomial expansion is a special case of this general framework. Moreover, we use Legendre and Chebyshev polynomial expansions to demonstrate the effectiveness of this method with applications in solving stochastic partial differential equations and high-dimensional (O(100)) problems.

Yang, Xiu↗

Two-Level Chebyshev Filter Based Complementary Subspace Method: Pushing the Envelope of Large-Scale Electronic Structure Calculations

We describe here a novel iterative strategy for Kohn–Sham density functional theory calculations aimed at large systems (>1,000 electrons), applicable to metals and insulators alike. In lieu of explicit diagonalization of the Kohn–Sham Hamiltonian on every self-consistent field (SCF) iteration, we employ a two-level Chebyshev polynomial filter based complementary subspace strategy to (1) compute a set of vectors that span the occupied subspace of the Hamiltonian; (2) reduce subspace diagonalization to just partially occupied states; and (3) obtain those states in an efficient, scalable manner via an inner Chebyshev filter iteration. By reducing the necessary computation to just partially occupied states and obtaining these through an inner Chebyshev iteration, our approach reduces the cost of large metallic calculations significantly, while eliminating subspace diagonalization for insulating systems altogether. We describe the implementation of the method within the framework of the discontinuous Galerkin (DG) electronic structure method and show that this results in a computational scheme that can effectively tackle bulk and nano systems containing tens of thousands of electrons, with chemical accuracy, within a few minutes or less of wall clock time per SCF iteration on large-scale computing platforms. We anticipate that our method will be instrumental in pushing the envelope of large-scale ab initio molecular dynamics. As a demonstration of this, we simulate a bulk silicon system containing 8,000 atoms at finite temperature, and obtain an average SCF step wall time of 51 s on 34,560 processors; thus allowing us to carry out 1.0 ps of ab initio molecular dynamics in approximately 28 h (of wall time).

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

High degree interpolation polynomial in Newton form

Polynomial interpolation is an essential subject in numerical analysis. Dealing with a real interval, it is well known that even if f(x) is an analytic function, interpolating at equally spaced points can diverge. On the other hand, interpolating at the zeroes of the corresponding Chebyshev polynomial will converge. Using the Newton formula, this result of convergence is true only on the theoretical level. It is shown that the algorithm which computes the divided differences is numerically stable only if: (1) the interpolating points are arranged in a different order, and (2) the size of the interval is 4.

Tal-Ezer, Hillel↗

Analysis of spectral projectors in one-dimensional domains

A class of projection operators with values in a subspace of polynomials is analyzed. These projection operators are related to the Hilbert spaces involved in the numerical analysis of spectral methods. They are, in the first part of the paper, the standard Sobolev spaces and, in the second part, some weighted Sobolev spaces, the weight of which is related to the orthoronality relation satisfied by the Chebyshev polynomials. These results are used to study the approximation of a model fourth-order problem.

Maday, Y.↗