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DOE OSTI2023

AutoSourceID-Classifier: Star-galaxy classification using a convolutional neural network with spatial information

Aims.Traditional star-galaxy classification techniques often rely on feature estimation from catalogs, a process susceptible to introducing inaccuracies, thereby potentially jeopardizing the classification’s reliability. Certain galaxies, especially those not manifesting as extended sources, can be misclassified when their shape parameters and flux solely drive the inference. We aim to create a robust and accurate classification network for identifying stars and galaxies directly from astronomical images. Methods.The AutoSourceID-Classifier (ASID-C) algorithm developed for this work uses 32x32 pixel single filter band source cutouts generated by the previously developed AutoSourceID-Light (ASID-L) code. By leveraging convolutional neural networks (CNN) and additional information about the source position within the full-field image, ASID-C aims to accurately classify all stars and galaxies within a survey. Subsequently, we employed a modified Platt scaling calibration for the output of the CNN, ensuring that the derived probabilities were effectively calibrated, delivering precise and reliable results. Results.We show that ASID-C, trained on MeerLICHT telescope images and using the Dark Energy Camera Legacy Survey (DECaLS) morphological classification, is a robust classifier and outperforms similar codes such as SourceExtractor. To facilitate a rigorous comparison, we also trained an eXtreme Gradient Boosting (XGBoost) model on tabular features extracted by SourceExtractor. While this XGBoost model approaches ASID-C in performance metrics, it does not offer the computational efficiency and reduced error propagation inherent in ASID-C’s direct image-based classification approach. ASID-C excels in low signal-to-noise ratio and crowded scenarios, potentially aiding in transient host identification and advancing deep-sky astronomy.

Astronomy & Astrophysics↗

DOE OSTI2025

MicroFisher: Fungal taxonomic classification for metatranscriptomic and metagenomic data using multiple short hypervariable markers

AbstractProfiling the taxonomic and functional composition of microbes using metagenomic (MG) and metatranscriptomic (MT) sequencing is advancing our understanding of microbial functions. However, the sensitivity and accuracy of microbial classification using genome– or core protein-based approaches, especially the classification of eukaryotic organisms, is limited by the availability of genomes and the resolution of sequence databases. To address this, we propose the MicroFisher, a novel approach that applies multiple hypervariable marker genes to profile fungal communities from MGs and MTs. This approach utilizes the hypervariable regions of ITS and large subunit (LSU) rRNA genes for fungal identification with high sensitivity and resolution. Simultaneously, we propose a computational pipeline (MicroFisher) to optimize and integrate the results from classifications using multiple hypervariable markers. To test the performance of our method, we applied MicroFisher to the synthetic community profiling and found high performance in fungal prediction and abundance estimation. In addition, we also used MGs from forest soil and MTs of root eukaryotic microbes to test our method and the results showed that MicroFisher provided more accurate profiling of environmental microbiomes compared to other classification tools. Overall, MicroFisher serves as a novel pipeline for classification of fungal communities from MGs and MTs.

Wang, Haihua↗

DOE OSTI2024

Grid Edge Waveform Analytics Framework for Event Detection and Classification

This paper provides a grid edge waveform analytics framework for power system event detection and classification in the local as well as in the wide area. This framework overviews data excellence for event detection and classification. The data excellence describes the data acquisition process and requirements, data processing, data quality, and data integrity. Power system event detection in the local area based on different features such as energy-based, cyclostationary approach, template matching, and wavelet transform are also discussed. Furthermore, local area event detection and classification using approaches such as statistical, signal processing, artificial intelligence, and hybrid are also discussed. Moreover, an overview of wide-area event detection and classification along with several other aspects such as wide-area events, wide-area event detection approaches, event location and system performance, event pattern recognition, inter-area oscillation, and wide-area frequency response under variable deployment of inverter-based resources are also provided. The proposed framework is the first step toward the goal of developing appropriate tools and methodologies to detect and classify local as well as wide-area events using waveform analytics. The appropriate event detection and classification framework development is especially important now as more and more grid edge devices with communication capabilities are being deployed in the modern power grid than ever before.

Bhusal, Narayan↗

DOE OSTI2026

Feature-Based PMU Event Classification under Variable PMU Participation and Overlapping Events

Danovo Energy Solution's presented its paper named: Feature-Based PMU Event Classification under Variable PMU Participation and Overlapping Events at the 2026 Georgia Tech Fault & Disturbance Analysis Conference. The full paper can be found at OSTI ID# 3169150 Paper Abstract—Phasor Measurement Units (PMUs) stream time synchronized, high-resolution measurements from the grid, enabling data-driven techniques for event detection and classification. Accurate event classification improves grid reliability and stability. Events can be detected by varying numbers of PMUs and exhibit different durations depending on the event type. This variability challenges standard classifiers that require uniform input sizes. Moreover, multiple events may coincide, which increases classification complexity. Standard classifiers assign each instance to the class with the highest predicted probability, whereas overlapping events may exhibit comparable probabilities across multiple classes. In this study, to handle data size variability, we extract a wide range of time–frequency domain features from all available PMUs for each event into a fixed-length vector, facilitating the application of standard machine learning classifiers, including Random Forest, XGBoost, LightGBM, Support Vector Machine, and Multilayer Perceptron. To account for overlapping events, a probabilistic post-processing step is applied. For a given data instance, if multiple predicted class probabilities exceed 30% and the differences between them are less than 10%, the event is assigned to multiple classes. Experiments using real-world PMU data demonstrate that the Random Forest and XGBoost models achieve the highest accuracy, while the proposed post-processing method yields perfect classification performance on external unseen test sets.

Nematirad, Reza [Danova Energy Solutions]↗

NASA NTRS1971

The minimum distance approach to classification

The work to advance the state-of-the-art of miminum distance classification is reportd. This is accomplished through a combination of theoretical and comprehensive experimental investigations based on multispectral scanner data. A survey of the literature for suitable distance measures was conducted and the results of this survey are presented. It is shown that minimum distance classification, using density estimators and Kullback-Leibler numbers as the distance measure, is equivalent to a form of maximum likelihood sample classification. It is also shown that for the parametric case, minimum distance classification is equivalent to nearest neighbor classification in the parameter space.

Wacker, A. G.↗

NASA NTRS1977

Application of LANDSAT images to wetland study and land use classification in west Tennessee, part 1

The author has identified the following significant results. densitometric analysis was performed on LANDSAT data to permit numerical classification of objects observed in the imagery on the basis of measurements of optical density. Relative light transmission measurements were taken on four types of scene elements in each of three LANDSAT black and white bands in order to determine which classification could be distinguished. The analysis of band 6 determined forest and agricultural classifications, but not the urban and wetlands. Both bands 4 and 5 showed a significant difference existed between the confirmed classification of wetlands-agriculture, and urban areas. Therefore, the combination of band 6 with either 4 or 5 would permit the separation of the urban from the wetland classification. To enhance the urban and wetland boundaries, the LANDSAT black and white bands were combined in a multispectral additive color viewer. Several combinations of filters and light intensities were used to obtain maximum discrimination between points of interest. The best results for enhancing wetland boundaries and urban areas were achieved by using a color composite (a blue, green, and red filter on bands 4, 5 and 6 respectively).

Shahrokhi, F.↗

NASA NTRS1980

LANDSAT applications to wetlands classification in the upper Mississippi River Valley

A 25% improvement in average classification accuracy was realized by processing double-date vs. single-date data. Under the spectrally and spatially complex site conditions characterizing the geographical area used, further improvement in wetland classification accuracy is apparently precluded by the spectral and spatial resolution restrictions of the LANDSAT MSS. Full scene analysis of scanning densitometer data extracted from scale infrared photography failed to permit discrimination of many wetland and nonwetland cover types. When classification of photographic data was limited to wetland areas only, much more detailed and accurate classification could be made. The integration of conventional image interpretation (to simply delineate wetland boundaries) and machine assisted classification (to discriminate among cover types present within the wetland areas) appears to warrant further research to study the feasibility and cost of extending this methodology over a large area using LANDSAT and/or small scale photography.

Lillesand, T. M.↗

NASA NTRS1982

An initial analysis of LANDSAT 4 Thematic Mapper data for the classification of agricultural, forested wetland, and urban land covers

An initial analysis of LANDSAT 4 thematic mapper (TM) data for the delineation and classification of agricultural, forested wetland, and urban land covers was conducted. A study area in Poinsett County, Arkansas was used to evaluate a classification of agricultural lands derived from multitemporal LANDSAT multispectral scanner (MSS) data in comparison with a classification of TM data for the same area. Data over Reelfoot Lake in northwestern Tennessee were utilized to evaluate the TM for delineating forested wetland species. A classification of the study area was assessed for accuracy in discriminating five forested wetland categories. Finally, the TM data were used to identify urban features within a small city. A computer generated classification of Union City, Tennessee was analyzed for accuracy in delineating urban land covers. An evaluation of digitally enhanced TM data using principal components analysis to facilitate photointerpretation of urban features was also performed.

Quattrochi, D. A.↗

DOE OSTI2026

Vegetation classification map and covariates associated with NEON AOP survey, East River, CO 2018

This package includes geospatial data layers developed to investigate how environmental gradients—specifically topography and near-surface soil properties—drive the spatial arrangement of dominant plant communities in mountainous watersheds. The geospatial products, which support the analysis of these ecological relationships, are derived from airborne hyperspectral and LiDAR datasets acquired by the National Ecological Observatory Network (NEON) Airborne Observation Platform (AOP), in conjunction with an extensive ground field campaign conducted in summer 2018. This work is part of the DOE Watershed Function Science Focus Area (SFA) and features geospatial datasets developed based on observations and ground data collected at East River, Colorado, in collaboration with the National Ecological Observatory Network (NEON) Airborne Observation Platform (AOP) survey in June 2018. Classification Map: - Classification Map (PNG, GeoTIFF): Derived from hyperspectral and LiDAR airborne data using a machine learning approach. - Class Code Mapper (CSV): Associates pixel values with corresponding vegetation/non-vegetation classes. - Classification Reference Data (CSV): Reference data used in the machine learning procedure. LiDAR-Derived Products: - Topographical Metrics (GeoTIFFs): Elevation, slope, curvature, TWI, TPI, solar insolation, and canopy height model (CHM), smoothed with a 5x5 pixel window. Vegetation Indices: - GeoTIFFs of NDVI, NDNI, NDWI: Vegetation indices derived from hyperspectral data. Urban Masks: - Urban Mask (GeoTIFF): Applied to the mapping to convert bare soil classes to urban classes. Software Compatibility: GeoTIFFs: Can be visualized with GIS software or libraries that support GeoTIFF images. CSV Files: Can be opened with any software that handles comma-separated values. The FLMD file provides details and links to the source datasets used to derive the products. The manuscript (in the Method session) provides details on how each product was derived. This work was supported by the Watershed Function Science Focus Area at Lawrence Berkeley National Laboratory funded by the US Department of Energy, Office of Science, Biological and Environmental Research under Contract No. DE-AC02-05CH11231. Update on 2026-03-25: Since the original dataset publication date of 02/28/2020, this package has a new classification map derived by an improved methodology. This update also includes additional ground data that improved the representation of some of the communities. See the methods for further details on what has changed between versions.

2018 NEON and 2025 CHESS Campaigns↗

DOE OSTI2025

Parallel sorting algorithm classification: is manual instrumentation necessary?

Understanding parallel algorithms is crucial for accelerating scientific simulations on complex, distributed memory, high-performance computers. Modern algorithm classification approaches learn semantics directly from source code to differentiate between algorithms, however, accessing source code is not always possible. We can learn about parallel algorithms from observing their performance, as programs running the same algorithms and using the same hardware should exhibit similar performance characteristics. We present an approach to learn algorithm classes from parallel performance data directly in order to classify algorithms without access to the source code. We extend previous work to enable classifying parallel sorting algorithms using automatic instrumentation instead of requiring manual region annotations in the source code. In this work, we design and demonstrate a study for classification of parallel sorting algorithms using parallel performance data collected from automatic instrumentation, and evaluate the performance of our new methodology on classification. We leverage Caliper to collect the performance data, Thicket for our exploratory data analysis (EDA), and PyTorch and Scikit-learn to evaluate the effectiveness of random forests, support vector machines (SVMs), decision trees, neural networks, and logistic regressions on parallel performance data. Additionally, we study noise in parallel performance data, whether the removal of noise and pre-processing of the data is necessary to accurately classify parallel sorting algorithms, and determine the effectiveness of features created from performance data. In conclusion, we demonstrate classification accuracy for these five different models of up to 97.7% across four different parallel algorithm classes.

Algorithm Classification↗

DOE OSTI2025

Chemical classification program synthesis using generative artificial intelligence

Accurately classifying chemical structures is essential for cheminformatics and bioinformatics, including tasks such as identifying bioactive compounds of interest, screening molecules for toxicity to humans, finding non-organic compounds with desirable material properties, or organizing large chemical libraries for drug discovery or environmental monitoring. However, manual classification is labor-intensive and difficult to scale to large chemical databases. Existing automated approaches either rely on manually constructed classification rules, or are deep learning methods that lack explainability. This work presents an approach that uses generative artificial intelligence to automatically write chemical classifier programs for classes in the Chemical Entities of Biological Interest (ChEBI) database. These programs can be used for efficient deterministic run-time classification of SMILES structures, with natural language explanations. The programs themselves constitute an explainable computable ontological model of chemical class nomenclature, which we call the ChEBI Chemical Class Program Ontology (C3PO). We validated our approach against the ChEBI database, and compared our results against deep learning models and a naive SMARTS pattern based classifier. C3PO outperforms the naive classifier, but does not reach the performance of state of the art deep learning methods. However, C3PO has a number of strengths that complement deep learning methods, including explainability and reduced data dependence. C3PO can be used alongside deep learning classifiers to provide an explanation of the classification, where both methods agree. The programs can be used as part of the ontology development process, and iteratively refined by expert human curators.

Artificial Intelligence↗

DOE OSTI2025

Machine learning models for segmentation and classification of cyanobacterial cells

Abstract Timelapse microscopy has recently been employed to study the metabolism and physiology of cyanobacteria at the single-cell level. However, the identification of individual cells in brightfield images remains a significant challenge. Traditional intensity-based segmentation algorithms perform poorly when identifying individual cells in dense colonies due to a lack of contrast between neighboring cells. Here, we describe a newly developed software package called Cypose which uses machine learning (ML) models to solve two specific tasks: segmentation of individual cyanobacterial cells, and classification of cellular phenotypes. The segmentation models are based on the Cellpose framework, while classification is performed using a convolutional neural network named Cyclass. To our knowledge, these are the first developed ML-based models for cyanobacteria segmentation and classification. When compared to other methods, our segmentation models showed improved performance and were able to segment cells with varied morphological phenotypes, as well as differentiate between live and lysed cells. We also found that our models were robust to imaging artifacts, such as dust and cell debris. Additionally, the classification model was able to identify different cellular phenotypes using only images as input. Together, these models improve cell segmentation accuracy and enable high-throughput analysis of dense cyanobacterial colonies and filamentous cyanobacteria.

Huffine, Clair A.↗

NASA NTRS1972

Minimum distance classification in remote sensing

The utilization of minimum distance classification methods in remote sensing problems, such as crop species identification, is considered. Literature concerning both minimum distance classification problems and distance measures is reviewed. Experimental results are presented for several examples. The objective of these examples is to: (a) compare the sample classification accuracy of a minimum distance classifier, with the vector classification accuracy of a maximum likelihood classifier, and (b) compare the accuracy of a parametric minimum distance classifier with that of a nonparametric one. Results show the minimum distance classifier performance is 5% to 10% better than that of the maximum likelihood classifier. The nonparametric classifier is only slightly better than the parametric version.

Wacker, A. G.↗

NASA NTRS1973

ERTS-1 data applications to Minnesota forest land use classification

The author has identified the following significant results. Color-combined ERTS-1 MSS spectral slices were analyzed to determine the maximum (repeatable) level of meaningful forest resource classification data visually attainable by skilled forest photointerpreters for the following purposes: (1) periodic updating of the Minnesota Land Management Information System (MLMIS) statewide computerized land use data bank, and (2) to provide first-stage forest resources survey data for large area forest land management planning. Controlled tests were made of two forest classification schemes by experienced professional foresters with special photointerpretation training and experience. The test results indicate it is possible to discriminate the MLMIS forest class from the MLMIS nonforest classes, but that it is not possible, under average circumstances, to further stratify the forest classification into species components with any degree of reliability with ERTS-1 imagery. An ongoing test of the resulting classification scheme involves the interpretation, and mapping, of the south half of Itasca County, Minnesota, with ERTS-1 imagery. This map is undergoing field checking by on the ground field cooperators, whose evaluation will be completed in the fall of 1973.

Sizer, J. E.↗

NASA NTRS1975

Computer implemented classification of vegetation using aircraft acquired multispectral scanner data

The use of aircraft 24-channel multispectral scanner data in conjunction with computer processing techniques to obtain an automated classification of plant species association was discussed. The classification of various plant species associations was related to information needed for specific applications. In addition, the necessity for multiple selection of training fields for a single class in situations where the study area consists of highly irregular terrain was detailed. A single classification was illuminated differently in different areas, resulting in the existence of multiple spectral signatures for a given class. These different signatures result since different qualities of radiation upwell to the detector from portions that have differing qualities of incident radiation. Techniques of training field selection were outlined, and a classification obtained from a natural area in Tishomingo State Park in northern Mississippi was presented.

Cibula, W. G.↗

NASA NTRS1976

Classification improvement by optimal dimensionality reduction when training sets are of small size

A computer simulation was performed to test the conjecture that, when the sizes of the training sets are small, classification in a subspace of the original data space may give rise to a smaller probability of error than the classification in the data space itself; this is because the gain in the accuracy of estimation of the likelihood functions used in classification in the lower dimensional space (subspace) offsets the loss of information associated with dimensionality reduction (feature extraction). A number of pseudo-random training and data vectors were generated from two four-dimensional Gaussian classes. A special algorithm was used to create an optimal one-dimensional feature space on which to project the data. When the sizes of the training sets are small, classification of the data in the optimal one-dimensional space is found to yield lower error rates than the one in the original four-dimensional space.

Starks, S. A.↗

NASA NTRS1976

Evaluation criteria for software classification inventories, accuracies, and maps

Statistical criteria are presented for modifying the contingency table used to evaluate tabular classification results obtained from remote sensing and ground truth maps. This classification technique contains information on the spatial complexity of the test site, on the relative location of classification errors, on agreement of the classification maps with ground truth maps, and reduces back to the original information normally found in a contingency table.

Jayroe, R. R., Jr.↗

NASA NTRS1976

Additional studies of forest classification accuracy as influenced by multispectral scanner spatial resolution

First, an analysis of forest feature signatures was used to help explain the large variation in classification accuracy that can occur among individual forest features for any one case of spatial resolution and the inconsistent changes in classification accuracy that were demonstrated among features as spatial resolution was degraded. Second, the classification rejection threshold was varied in an effort to reduce the large proportion of unclassified resolution elements that previously appeared in the processing of coarse resolution data when a constant rejection threshold was used for all cases of spatial resolution. For the signature analysis, two-channel ellipse plots showing the feature signature distributions for several cases of spatial resolution indicated that the capability of signatures to correctly identify their respective features is dependent on the amount of statistical overlap among signatures. Reductions in signature variance that occur in data of degraded spatial resolution may not necessarily decrease the amount of statistical overlap among signatures having large variance and small mean separations. Features classified by such signatures may thus continue to have similar amounts of misclassified elements in coarser resolution data, and thus, not necessarily improve in classification accuracy.

Sadowski, F. E.↗