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At least 37 records · Page 2

Soil oxygen dynamics: a key mediator of tile drainage impacts on coupled hydrological, biogeochemical, and crop systems

Tile drainage removes excess water and is an essential, widely adopted management practice to enhance crop productivity in the US Midwest and throughout the world. Tile drainage has been shown to significantly change hydrological and biogeochemical cycles by lowering the water table and reducing the residence time of soil water, although examining the complex interactions and feedbacks in an integrated hydrology–biogeochemistry–crop system remains elusive. Oxygen dynamics are critical to unraveling these interactions and have been ignored or oversimplified in existing models. Understanding these impacts is essential, particularly so because tile drainage has been highlighted as an adaptation under projected wetter springs and drier summers in the changing climate in the US Midwest. We used the ecosys model that uniquely incorporates first-principle soil oxygen dynamics and crop oxygen uptake mechanisms to quantify the impacts of tile drainage on hydrological and biogeochemical cycles and crop growth in corn–soybean rotation fields. The model was validated with data from a multi-treatment, multi-year experiment in Washington, IA. The relative root mean square error (rRMSE) for the corn and soybean yield in validation is 5.66 % and 12.57 %, respectively. The Pearson coefficient (r) of the monthly tile flow during the growing season is 0.78. Plant oxygen stress turns out as an emergent property of the equilibrium between the soil oxygen supply and biological demand. The impact of tile drainage on the system is achieved through a series of coupled feedback mechanisms. The model results show that tile drainage reduces the soil water content and enhances soil oxygenation. It additionally increases the subsurface discharge and elevates inorganic nitrogen leaching, with seasonal variations influenced by climate and crop phenology. The improved aerobic condition alleviates crop oxygen stress during wet springs, thereby promoting crop root growth during the early growth stage. The development of greater root density, in turn, mitigates water stress during dry summers, leading to an overall increase in the crop yield by ∼6 %. These functions indicate the potential of tile drainage in bolstering crop resilience to climate change and the use of this modeling tool for large-scale assessments of tile drainage. The model reveals the underlying causal mechanisms that drive the agroecosystem response to drainage on the coupled hydrology, biogeochemistry, and crop system dynamics.

60 APPLIED LIFE SCIENCES↗

Applying double cropping and interactive irrigation in the North China Plain using WRF4.5

Abstract. Irrigated cultivation exerts a significant influence on the local climate and the hydrological cycle. The North China Plain (NCP) is known for its intricate agricultural system, marked by expansive cropland, high productivity, compact rotation, a semi-arid climate, and intensive irrigation practices. As a result, there has been considerable attention on the potential impact of this intensive irrigated agriculture on the local climate. However, studying the irrigation impact in this region has been challenging due to the lack of an accurate simulation of crop phenology and irrigation practices within the climate model. By incorporating double cropping with interactive irrigation, our study extends the capabilities of the Weather Research Forecast (WRF) model, which has previously demonstrated commendable performance in simulating single-cropping scenarios. This allows for two-way feedback between irrigated crops and climate, further enabling the inclusion of irrigation feedback from both ground and vegetation perspectives. The improved crop modeling system shows significant enhancement in capturing vegetation and irrigation patterns, which is evidenced by its ability to identify crop stages, estimate field biomass, predict crop yield, and project monthly leaf area index. The improved simulation of large-scale irrigated crops in the NCP can further enhance our understanding of the intricate relationship between agricultural development and climate change.

54 ENVIRONMENTAL SCIENCES↗

Preliminary evaluation of spectral, normal and meteorological crop stage estimation approaches

Several of the projects in the AgRISTARS program require crop phenology information, including classification, acreage and yield estimation, and detection of episodal events. This study evaluates several crop calendar estimation techniques for their potential use in the program. The techniques, although generic in approach, were developed and tested on spring wheat data collected in 1978. There are three basic approaches to crop stage estimation: historical averages for an area (normal crop calendars), agrometeorological modeling of known crop-weather relationships agrometeorological (agromet) crop calendars, and interpretation of spectral signatures (spectral crop calendars). In all, 10 combinations of planting and biostage estimation models were evaluated. Dates of stage occurrence are estimated with biases between -4 and +4 days while root mean square errors range from 10 to 15 days. Results are inconclusive as to the superiority of any of the models and further evaluation of the models with the 1979 data set is recommended.

Cate, R. B.↗

The Effect of Agricultural Growing Season Change on Market Prices in Africa

Local agricultural production is a key element of food security in many agricultural countries in Africa. Climate change and variability is likely to adversely affect these countries, particularly as they affect the ability of smallholder farmers to raise enough food to feed themselves. Seasonality influences farmers' decisions about when to sow and harvest, and ultimately the success or failure of their crops. At a 2009 conference in the United Kingdom hosted by the Institute of Development Studies, Jennings and Magrath (2009) described farmer reports from East Asia, South Asia, Southern Africa, East Africa and Latin America. Farmers indicate significant changes in the timing of rainy seasons and the pattern of rains within seasons, including: More erratic rainfall, coming at unexpected times in and out of season; Extreme storms and unusually intense rainfall are punctuated by longer dry spells within the rainy season; Increasing uncertainty as to the start of rainy seasons in many areas; Short or transitional second rainy seasons are becoming stronger than normal or are disappearing altogether. These farmer perceptions of change are striking in that they are geographically widespread and are remarkably consistent across diverse regions (Jennings and Magrath, 2009). The impact of these changes on farmers with small plots and few resources is large. Farming is becoming riskier because of heat stress, lack of water, pests and diseases that interact with ongoing pressures on natural resources. Lack of predictability in the start and length of the growing season affects the ability of farmers to invest in appropriate fertilizer levels or improved, high yielding varieties. These changes occur at the same time as the demand for food is rising and is projected to continue to rise for the next fifty years (IAASTD, 2008). Long-term data records derived from satellite remote sensing can be used to verify these reports, providing necessary analysis and documentation required to plan effective adaptation strategies. Remote sensing data can also provide some understanding of the spatial extent of these changes and whether they are likely to continue. Given the agricultural nature of most economies on the African continent, agricultural production continues to be a critical determinant of both food security and economic growth (Funk and Brown, 2009). Crop phenological parameters, such as the start and end of the growing season, the total length of the growing season, and the rate of greening and senescence are important for planning crop management, crop diversification, and intensification. The World Food Summit of 1996 defined food security as: "when all people at all times have access to sufficient, safe, nutritious food to maintain a healthy and active life". Food security roughly depends on three factors: 1) availability of food; 2) access to food and 3) appropriate use of food, as well as adequate water and sanitation. The first factor is dependent on growing conditions and weather and climate. In a previous paper we have investigated this factor by evaluating the effect of large scale climate oscillation on land surface phenology (Brown et al., 2010). We found that all areas in Africa are significantly affected by at least one type of large scale climate oscillations and concluded that these somewhat predictable oscillations could perhaps be used to forecast agricultural production. In addition, we have evaluated changes in agricultural land surface phenology over time (Brown et al., 2012). We found that land surface phenology models, which link large-scale vegetation indices with accumulated humidity, could successfully predict agricultural productivity in several countries around the world. In this chapter we are interested in the effect of variability in peak timing of the growing season, or phenology, on the second factor of food security, food access. In this chapter we want to determine if there is a link between market prices and land surface phenology and to determine which markets are vulnerable to land surface phenology changes and variability and which market prices are not correlated.

Prices↗

The role of phenology in statistical crop acreage measurement

In order to achieve market acceptance, the accuracy of remote sensing systems needs to be increased from the historically achieved average level of approximately 80-85% to 96-98%, i.e., by a factor of at least three, preferably five. A theory of discrimination is developed based on the fine-grained spectral data from LACIE supersites. It is shown that significant improvements in discrimination accuracy are possible by exploiting the differentials of crop spectra occurring between different phenologic stages. The major effects of such techniques on data system design are examined with respect to recurrence frequency, data volume, and information extraction.

Castruccio, P. A.↗

Evapotranspiration-Based Irrigation Scheduling in Salinas Valley Vegetable Crops

Crop evapotranspiration (ETc) monitoring may support improved irrigation water management in California's Central Coast agricultural region. The CropManage (CM) web-application, developed and operated by the University of California, informs irrigation and nitrogen scheduling decisions made by growers and crop consultants. Daily weather conditions are accounted for by use of grass reference ET data imported from the California Dept. Water Resources. Satellite observations of crop development from NASA's Satellite Irrigation Management Support can be imported and used by CM to adjust crop phenology. A replicated irrigation trial was performed July-October 2018 to investigate yield response of drip-irrigated celery (Apium graveolens) to applied water volume, and to further calibrate CM for use in that crop. Water was uniformly applied by sprinklers to establish the crop, and CM was then used to guide surface drip irrigation treatments applied three times weekly at 50%, 75%, 100%, 125% and 150% of ETc replacement level. Nitrogen fertilizer totaling 380 kg/ha was applied through the drip system generally once per week. Treatments were evaluated for commercial yield 85 and 93 days after transplanting (DAT). The 100% ETc treatment yielded 83 Mg/ha 93 DAT, which was 10 Mg/ha higher than the reported regional average yield in 2017. The 100% treatment received a seasonal total of 34 cm of water, compared with reported grower average exceeding 48 cm. Higher yields of 102 and 108 Mg/ha were observed in the 125% and 150% ETc treatments, respectively. Regarding crop quality, however, the 150% ETc treatment suffered greater incidence of pith breakdown and basal rot than the 100% treatment. Yields from the 50% and 75% treatments were below regional average. Aboveground biomass was evaluated 87 DAT. Fresh and dry biomass accumulations were positively related to applied water volume. Additional findings will be presented for a cauliflower trial conducted spring/summer 2019.

Johnson, Lee F.↗

Coupling localized Noah-MP-Crop model with the WRF model improved dynamic crop growth simulation across Northeast China

Croplands play a critical role in regulating the energy and moisture exchanges between the land surface and atmosphere. However, the interactions between cropland and climate are usually poorly represented due to a lack of detailed representation in crop types and field management. Here, we coupled the Noah-MP-Crop model with the state-of-the-art Weather Research and Forecasting (WRF) model to explore and evaluate the crop growth dynamics in response to climate variations across Northeast China. The default parameters of the crop model were not exactly suitable for the agricultural ecosystems in Northeast China. The detailed cropland distribution, and crop phenology parameters including growing degree days (GDD) and planting (harvesting) date were first created using multi-source remote sensing products and reanalysis data, and was then successfully used to simulate the growth and yield for corn and soybean and associated energy exchanges. We also optimized and calibrated other crop parameters using the time-series of the Moderate Resolution Imaging Spectroradiometer (MODIS) land surface products. The modified crop model substantially improved the simulation of crop growth, plant physiology, and biomass accumulation for both corn and soybean. Coupling the localized dynamic crop model into the WRF led to considerable decreases in the simulated mean-absolute-errors (MAEs) and biases of the leaf area index, evapotranspiration, and gross primary production compared with the MODIS observed values. Compared with the statistical yield from each province, the modified crop model underestimated the corn yield from 11.1% to 48.6%, whereas overestimated the soybean yield from 16.5% to 162.6%.

54 ENVIRONMENTAL SCIENCES↗

A comprehensive data processing plan for crop calendar MSS signature development from satellite imagery: Crop identification using vegetation phenology

The author has identified the following significant results. The phenological method of crop identification involves the creation of crop signatures which characterize multispectral observations as phenological growth states. The phenological signature models spectral reflectance explicitly as a function of crop maturity rather than as a function of date. A correspondence of time to growth state is established which minimizes the smallest difference between the given multispectral multitemporal vector and a category mean vector. The application of the method to the identification of winter wheat and corn shows (1) the method is capable of discriminating crop type with about the same degree of accuracy as more traditional classifiers; (2) the use of LANDSAT observations on two or more dates yields better results than the use of a single observation; and (3) some potential is demonstrated for labeling the degree of maturity of the crop, as well as the crop type.

Hlavka, C. A.↗

Initial Evaluation of CropManage Decision-Support Model for Vineyard ET Estimation

The CropManage(CM) decision-support web application was originally developed by U.C. Cooperative Extension to support evapotranspiration (ET) based irrigation scheduling and nutrient management of cool-season vegetables. The model uses prescribed crop phenology curves to develop daily estimates of fractional green canopy cover (Fc) within the field. Periodic Fc observations acquired by ground-based methods or imported from NASA’s Satellite Irrigation Management Support (SIMS) can be used to adjust the prescribed timeseries for such factors as weather anomalies or non-standard agronomic practice, as needed. Fc is then converted to daily crop coefficient (fraction of reference ET) values. The crop coefficient is combined with reference evapotranspiration, collected by the California Irrigation Management Information System, to derive daily ET estimates for the given field. Irrigation runtime recommendations are issued for a given date based on total ET since the last irrigation event (less any rainfall), and corrected for distribution uniformity of the water delivery system. In this project, CM was adapted to vineyards by adding sub-models to account for early-season depletion of stored soil moisture, cover crop presence, and intentional water stress. An initial trial was performed on a Central Coast winegrape vineyard, where an eddy covariance tower measured daily ET during from May-Dec 2020. Total ET for the period showed strong agreement between the tower-based measurements (443 mm) and the CM model (431 mm). The model tended to overestimate cumulative ET during mid-June by up to 30 mm (about 15%) and later underestimated cumulative ET by as much as 65 mm (about 23%) in late September, suggesting that additional model calibration is needed to improve simulation of within-season variability. Results will be reported for trials on additional vineyard sites conducted during the 2021 season.

Evaluation↗

ShadeLab/PAPER_Howe_2023_switchgrass_MetaT

The raw data (metagenomes and metatranscriptomes) for this study are available in the Joint Genomes Institute Genome Portal (https://genome.jgi.doe.gov/portal/ Project ID 503249) with projects designated by year and product type. The MAG genomes analyzed in this paper are available on NCBI, as bioproject PRJNA800073. Plants and microorganisms form beneficial associations. Understanding plant-microbe interactions will inform microbiome management to enhance crop productivity and resilience to stress. Here, we apply a genome-centric approach to identify ecologically important leaf microbiome members on field-grown switchgrass and miscanthus and to quantify their activities for switchgrass over two growing seasons. We integrate metagenome and metatranscriptome sequencing from 192 leaf samples collected over representative time points in crop phenology. We curated 40 medium- and high-quality metagenome-assembled-genomes (MAGs) and focused analysis on seasonal transcript recruitment to them. Classes represented by these focal MAGs (Actinomycetia, Alpha- and Gamma- Proteobacteria, and Bacteroidota) were active and had increases in transcripts for short-chain dehydrogenase, molybdopterin oxidoreductase, and polyketide cyclase in the late season. The majority of MAGs had activated stress-associated pathways, including trehalose metabolism, indole acetic acid degradation, betaine biosynthesis, and reactive oxygen species degradation, suggesting direct engagement with the host environment. We also detected seasonally activated biosynthetic pathways for terpenes (carotenoids and isoprenoids) and for various non-ribosomal peptide pathways that were poorly annotated. Overall, this study overcame laboratory and bioinformatic challenges associated with field-based leaf metatranscriptome analysis to inform both general and likely specialized activities of these phyllosphere populations. These activities collectively support that leaf-associated bacterial populations are seasonally dynamic, responsive to host cues, and interactively engage in feedback with the plant. This analysis represented quality filtering of metagenomes and metatranscriptomes (data-preparation folder), metagenome assemblies (metagenome-assembly folder) and metagenome-assembled genome binning, curation, refinement, annotation (mag-evaluation folder). Abundances of sequencing libraries were calculated based on reads mapped (mapping folder). Additionallly, analysis of our annotated results are also included (analysis folder).

Howe, Adina↗

A meteorologically driven grain sorghum stress indicator model

A grain sorghum soil moisture and temperature stress model is described. It was developed to serve as a meteorological data filter to alert commodity analysts to potential stress conditions and crop phenology in selected grain sorghum production areas. The model also identifies optimum conditions on a daily basis and planting/harvest problems associated with poor tractability.

Taylor, T. W.↗

Relating Land Cover Change to Runoff Distribution Using NASA Earth Observations in Riley County, Kansas

In recent years, Riley County, Kansas experienced high levels of flooding potentially due to changes in land use and impervious surface. To analyze the increase in floods and runoff patterns over time, this study contrasted two methods of curve number (CN) calculation, which estimated runoff from rainfall events, from 2006-2020. The conventional calculation method used a look-up table and tracked land use/land cover change. This method resulted in static tables from various inputs such as soil type, surface imperviousness, slope, and crop phenology to estimate runoff versus infiltration. These tables allowed for phenology specific curve numbers and accounted for various farming techniques but required many inputs and lacked flexibility to include seasonal variations in vegetation. In contrast, the dynamic method is a more modern and simple calculation employing normalized difference vegetation index (NDVI) data from Landsat 5, Landsat 7, and Landsat 8 satellites compiled over the rainy season each year to calculate curve numbers based off seasonal vegetation. This dynamic method allowed for more precise analysis of runoff variability because NDVI is a more accurate, real-time measurement for land cover and it could be calculated with greater temporal detail. The results will allow decision makers to make more informed decisions on resiliency strategies to address future flooding.

Trista Brophy↗

CropManage Application for Vineyard Irrigation Decision-Support

CropManage is a free web-application developed by U.C. Cooperative Extension to support evapotranspiration based irrigation scheduling and nutrient management for major specialty crops. Prescribed phenology curves are used to develop daily estimates of canopy cover within a given field, based on days since planting (annual crops) or budbreak (trees, vines). These curves are modulated by a MaxCan parameter representing seasonal maximum canopy cover. Crop development observations can be used to adjust for such factors as weather anomalies or non-standard agronomic practice, as needed. Canopy cover is converted to crop coefficient and combined with reference evapotranspiration to derive daily water consumption. Guidance on crop water requirement is then conveyed to users in terms of system runtime issued on-demand for a given date, largely based on total evapotranspiration since last irrigation event. In this study, CropManage was adapted to vineyards by adding modules accounting for early-season soil moisture depletion and cover crop presence. A crop stress parameter was added to accommodate deficit irrigation practice, allowing the user to specify percentage departure from full water requirement along with start/stop dates. An initial verification exercise was performed on three winegrape vineyards located in California’s Central Coast (2020), North Coast (2020) and Central Valley (2019). Daily crop evapotranspiration was monitored by eddy-covariance fluxtowers. MaxCan was measured by ground and satellite observation. Stress regime was specified by grower practice where available, otherwise stress levels were inferred from applied water records. Mean absolute error and mean bias error of modeled cumulative evapotranspiration were computed with respect to the eddy covariance measurements collected throughout the growing season. Results indicate the modified CropManage water management module performs reasonably well for winegrape. Additional effort is planned to modify the nutrient module for vineyard use.

CropManage↗

Infrared-temperature variability in a large agricultural field

The combined effect of water carved gullies, varying soil color, moisture state of the soil and crop, nonuniform phenology, and bare spots was measured for commercially grown barley planted on varying terrain. For all but the most rugged terrain, over 80% of the area within 4, 16, 65, and 259 ha cells was at temperatures within 3 C of the mean cell temperature. The result of using relatively small, 4 ha instantaneous field of views for remote sensing applications is that either the worst or the best of conditions is often observed. There appears to be no great advantage in utilizing a small instantaneous field of view instead of a large one for remote sensing of crop canopy temperatures. The two alternatives for design purposes are then either a very high spatial resolution, of the order of a meter or so, where the field is very accurately temperature mapped, or a low resolution, where the actual size seems to make little difference.

Millard, J. P.↗

Houston area multicrop inspection trips

The phenology of crops such as corn, cotton, soybeans, sorghum, sunflowers, and rice and their observed signatures on LANDSAT imagery was studied. This was accomplished by photographing the various crops in segments 275 and 276 located in Wharton County, Texas and comparing those photographs with LANDSAT imagery of the same dates. These comparisons gave insight as to why a particular crop growth stage appeared as a definite signature on LANDSAT and how the percentage of ground cover of various crops affected the signatures on LANDSAT imagery. Numerous crop growth stages could not be directly compared due to cloud cover during several LANDSAT overpasses.

Dunham, E. W.↗

The Landsat-D responsiveness to user community needs

Initial examinations of the Landsat-4 Multispectral Scanner and Thematic Mapper (IM) imagery indicate that these systems and the ground-based data processing systems are performing well. A combination of the spatial resolution of the multispectral scanner with the four band (0.5-0.6, 0.6-0.7, 0.7-0.8, and 0.8-1.1 microns) multispectral capability provides a useful observation technique for identifying crop type, phenological state of development, and a real condition assessment. Landsat multispectral scanner imagery has become more important in the search for new deposits of oil and mineral resources, and geological applications indicate that image analysis complements geological mapping techniques. Advantages of the TM include more precise measurements of the increased reflectance of vegetation in the green and near infrared. In addition, TM has improvement vegetation species differentiation, due to measurements made in new spectral bands. Preliminary TM data analysis reveals that systems have performed to optimum expectations.

Salomonson, V. V.↗