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At least 37 records · Page 2

Data movement engine

A memory system of a data processing system includes one or more storage devices and a data rearrangement engine for moving data between memory regions of the plurality of memory regions. The data rearrangement engine is configured to rearrange data stored at non-contiguous addresses in a source memory region into contiguous address in a destination region responsive to a rearrangement specified by a host processing unit of the data processing system. A description of the rearranged data is maintained in a metadata memory region. Rearranged data may be accessed by one or more host processing units. Write-back of data from the destination to the source region may be reduced by use of Bloom filter or the like.

Beard, Jonathan Curtis↗

Graph Analytics and Optimization Methods for Insights from the Uber Movement Data

In this work we leverage the Uber movement dataset for the Los Angeles (LA) area where partial TAZ to TAZ (Traffic Analysis Zone) trip time data is available. We first create a TAZ-TAZ network based on nearest neighbors and propose a model that allows us to complete the $(O-D)$ (Origin-Destination) travel time matrix, using optimization methods such as non-negative least squares. We apply these algorithms for several communities in the TAZ-TAZ network and present insights in the form of completed $(O-D)$ matrices and associated temporal trends. We qualify the error performance and scalability of our flows. We conclude by pointing out the directions in our ongoing work to improve the quality and scale of travel time estimation.

Visweswara Sathanur, Arun↗

Deriving spatially explicit direct and indirect interaction networks from animal movement data

Abstract Quantifying spatiotemporally explicit interactions within animal populations facilitates the understanding of social structure and its relationship with ecological processes. Data from animal tracking technologies (Global Positioning Systems [“GPS”]) can circumvent longstanding challenges in the estimation of spatiotemporally explicit interactions, but the discrete nature and coarse temporal resolution of data mean that ephemeral interactions that occur between consecutive GPS locations go undetected. Here, we developed a method to quantify individual and spatial patterns of interaction using continuous‐time movement models (CTMMs) fit to GPS tracking data. We first applied CTMMs to infer the full movement trajectories at an arbitrarily fine temporal scale before estimating interactions, thus allowing inference of interactions occurring between observed GPS locations. Our framework then infers indirect interactions—individuals occurring at the same location, but at different times—while allowing the identification of indirect interactions to vary with ecological context based on CTMM outputs. We assessed the performance of our new method using simulations and illustrated its implementation by deriving disease‐relevant interaction networks for two behaviorally differentiated species, wild pigs ( Sus scrofa ) that can host African Swine Fever and mule deer ( Odocoileus hemionus ) that can host chronic wasting disease. Simulations showed that interactions derived from observed GPS data can be substantially underestimated when temporal resolution of movement data exceeds 30‐min intervals. Empirical application suggested that underestimation occurred in both interaction rates and their spatial distributions. CTMM‐Interaction method, which can introduce uncertainties, recovered majority of true interactions. Our method leverages advances in movement ecology to quantify fine‐scale spatiotemporal interactions between individuals from lower temporal resolution GPS data. It can be leveraged to infer dynamic social networks, transmission potential in disease systems, consumer–resource interactions, information sharing, and beyond. The method also sets the stage for future predictive models linking observed spatiotemporal interaction patterns to environmental drivers.

59 BASIC BIOLOGICAL SCIENCES↗

Harnessing Data Movement in Virtual Clusters for In-Situ Execution

As a result of increasing data volume and velocity, Big Data science at exascale has shifted towards the in-situ paradigm, where large scale simulations run concurrently alongside data analytics. With in-situ, data generated from simulations can be processed while still in memory, thereby avoiding the slow storage bottleneck. However, running simulations and analytics together on shared resources will likely result in substantial contention if left unmanaged, as demonstrated in this work, leading to much reduced efficiency of simulations and analytics. Recently, virtualization technologies such as Linux containers have been widely applied to data centers and physical clusters to provide highly efficient and elastic resource provisioning for consolidated workloads including scientific simulations and data analytics. In this paper, we investigate to facilitate network traffic manipulation and reduce mutual interference on the network for in-situ applications in virtual clusters. In order to dynamically allocate the network bandwidth when it is needed, we adopt SARIMA-based techniques to analyze and predict MPI traffic issued from simulations. Although this can be an effective technique, the naïve usage of network virtualization can lead to performance degradation for bursty asynchronous transmissions within an MPI job. Here, we analyze and resolve this performance degradation in virtual clusters.

97 MATHEMATICS AND COMPUTING↗

Flexible Bandwidth Scheduling for Streaming Data Movement Over Dedicated Networks

A wide range of scientific disciplines are generating large amounts of data at a high speed, which must be transferred to remote sites for real-time processing. Reserving bandwidths over dedicated channels in high-performance networks (HPNs) within a specified time interval has proved to be an effective solution to such high-demanding data transfer. Given a bandwidth reservation request, if the desired bandwidth within the specified time interval cannot be satisfied, most of the existing scheduling algorithms simply reject the request, which would immediately terminate the application. One reasonable approach to mitigate this issue is to provide an alternative bandwidth reservation option to schedule the desired bandwidth within the time interval closest to the specified one. We propose a flexible bandwidth reservation algorithm that considers both the best and alternative bandwidth reservation options for a given request. Extensive simulations are conducted to show the superior performance of the proposed scheduling algorithm compared with a heuristic approach adapted from existing scheduling algorithms.

Zuo, Liudong↗

Hardware assisted fine-grained data movement

A processor includes a task scheduling unit and a compute unit coupled to the task scheduling unit. The task scheduling unit performs a task dependency assessment of a task dependency graph and task data requirements that correspond to each task of the plurality of tasks. Based on the task dependency assessment, the task scheduling unit schedules a first task of the plurality of tasks and a second proxy object of a plurality of proxy objects specified by the task data requirements such that a memory transfer of the second proxy object of the plurality of proxy objects occurs while the first task is being executed.

Hassaan, Muhammad Amber↗

Hardware assisted fine-grained data movement

A processor includes a task scheduling unit and a compute unit coupled to the task scheduling unit. The task scheduling unit performs a task dependency assessment of a task dependency graph and task data requirements that correspond to each task of the plurality of tasks. Based on the task dependency assessment, the task scheduling unit schedules a first task of the plurality of tasks and a second proxy object of a plurality of proxy objects specified by the task data requirements such that a memory transfer of the second proxy object of the plurality of proxy objects occurs while the first task is being executed.

Hassaan, Muhammad Amber↗