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At least 37 records · Page 2

The beetle Tribolium castaneum has a fushi tarazu homolog expressed in stripes during segmentation

The genetic control of embryonic organization is far better understood for the fruit fly Drosophila melanogaster than for any other metazoan. A gene hierarchy acts during oogenesis and embryogenesis to regulate the establishment of segmentation along the anterior-posterior axis, and homeotic selector genes define developmental commitments within each parasegmental unit delineated. One of the most intensively studied Drosophila segmentation genes is fushi tarazu (ftz), a pair-rule gene expressed in stripes that is important for the establishment of the parasegmental boundaries. Although ftz is flanked by homeotic selector genes conserved throughout the metazoa, there is no evidence that it was part of the ancestral homeotic complex, and it has been unclear when the gene arose and acquired a role in segmentation. We show here that the beetle Tribolium castaneum has a ftz homolog located in its Homeotic complex and expressed in a pair-rule fashion, albeit in a register differing from that of the fly gene. These and other observations demonstrate that a ftz gene preexisted the radiation of holometabolous insects and suggest that it has a role in beetle embryogenesis which differs somewhat from that described in flies.

NASA Discipline Developmental Biology↗

The Tribolium homeotic gene Abdominal is homologous to abdominal-A of the Drosophila bithorax complex

The Abdominal gene is a member of the single homeotic complex of the beetle, Tribolium castaneum. An integrated developmental genetic and molecular analysis shows that Abdominal is homologous to the abdominal-A gene of the bithorax complex of Drosophila. abdominal-A mutant embryos display strong homeotic transformations of the anterior abdomen (parasegments 7-9) to PS6, whereas developmental commitments in the posterior abdomen depend primarily on Abdominal-B. In beetle embryos lacking Abdominal function, parasegments throughout the abdomen are transformed to PS6. This observation demonstrates the general functional significance of parasegmental expression among insects and shows that the control of determinative decisions in the posterior abdomen by homeotic selector genes has undergone considerable evolutionary modification.

Non-NASA Center↗

Oscillator strength trends in group IVb homologous ions

Shock tube data are used to examine the systematic f value behavior in prominent visible transition arrays (ns-np, np-(n+l)s, np-nd) for the homologous emitter sequence Si 11, Ge 11, Sn 11, and Pb 11. Regularities found for these data are compared with trends in lighter elements. Agreements and s disparities with theoretical and experimental oscillator strengths from the literature are noted.

Miller, M. H.↗

Oscillator strength trends in group IV homologous ions

Shock-tube data are used to examine systematic f-value behavior in prominent visible transition arrays for the homologous emitter sequence Si-II, Ge-II, Sn-II, and Pb-II. Regularities found in these data are compared with trends in lighter elements. Agreements and disparities with theoretical and experimental oscillator strengths from existing literature are noted.

Miller, M. H.↗

About the onsets of closely-consecutive homologous flares

The onsets of closely consecutive homologous flares (CCHF), which are separated by less than 6 hours and most often by about 1 hour, are compared with that of isolated flares (no flare in the region half a day before). Isolated flares appear to be formed of two components, a surging arch and a flaring arch, while a set of CCHF may be composed of consecutive elementary flares or of a series of complex ones. It is shown that the onset of eruptive flare phenomena is not the same for an isolated event and for a member of CCHF (excluding the first) as found in H-alpha and EUV observations, and probably in X-ray observations also. It is suggested that a CCHF set would become a single flare with episodic enhancement of brightness by taking account of the common H-alpha behavior of surging and flaring arches as well as the EUV emission.

Martres, M. J.↗

Establishing homologies in protein sequences

Computer-based statistical techniques used to determine homologies between proteins occurring in different species are reviewed. The technique is based on comparison of two protein sequences, either by relating all segments of a given length in one sequence to all segments of the second or by finding the best alignment of the two sequences. Approaches discussed include selection using printed tabulations, identification of very similar sequences, and computer searches of a database. The use of the SEARCH, RELATE, and ALIGN programs (Dayhoff, 1979) is explained; sample data are presented in graphs, diagrams, and tables and the construction of scoring matrices is considered.

Dayhoff, M. O.↗

Progress in the study of homologous flares on the sun. II

Studies of groups of homologous flares in active regions in 1980 were performed using a variety of space and ground-based instruments. The properties of three of the groups are described and combined to form a possible sequence of events.

Woodgate, B. E.↗

Deviations Of Microwave Antennas From Homology

Surface distortions quantified over range of tilt angles. Formula advanced to quantify deviation of paraboloidal antenna reflector from intended homologous shape, over range of tilt ranges.

Kiedron, Krystyna↗

Relative rates for plasma homo- and copolymerizations of olefins in a homologous series of fluorinated ethylenes

It is well known that the rate of plasma polymerization, or deposition rate, of a given monomer depends on various plasma process parameters, e.g., monomer flow rate, pressure, power, frequency (DC, rf or microwave), location of the substrate in the reactor, reactor geometry or configuration, and temperature. In contrast, little work has been done to relate deposition rates to monomer structures for a homologous series of monomers where the rates are obtained under identical plasma process parameters. For the particular series of fluorinated ethylenes (C2HxF4-x; x = 0-4), deposition rates were reported for ethylene (ET), vinyl fluoride, vinylidene fluoride and tetrafluoroethylene (TFE), but for plasma polymerizations carried out under different discharge conditions, e.g., pressure, current density, and electrode temperature. Apparently, relative deposition rates were reported for only two members of that series (ET, x = 4, and TFE, x = 0) for which the plasma polymerizations were conducted under identical conditions. We now present relative deposition rates for both homopolymerizations and copolymerizations of the entire series of fluorinated ethylenes (x = 0-4). Our interest in such rates stems from prior work on the plasma copolymerization of ET and TFE in which it was found that the deposition rates for the plasma copolymers, when plotted versus mol % TFE in the ET/TFE feed stock, followed a concave-downward curve situated above the straight line joining the deposition rates for the plasma homopolymers. This type of plot (observed also for an argon-ET/TFE plasma copolymerization) indicated a positive interaction between ET and TFE such that each monomer apparently "sensitized" the plasma copolymerization of the other. Since the shape of that plot is not altered if mol % TFE is replaced by F/C, the fluorine-to-carbon ratio, this paper aims (1) to show how the relative deposition rates for plasma copolymers drawn from all pairs of monomers in the C2HxF4-x series, as well as the deposition rates for the individual plasma homopolymers, vary with F/C ratios of the monomers or monomer blends, and (2) to see if those rates give rise to a common plot.

NASA Center ARC↗

Evidence for Magnetic Reconnection in Three Homologous Solar Flares Observed by RHESSI

We present RHESSI observF5oss of three homologous flares, which occurred between April 14 and 16, 2002. We find that the RHESSI images of all three flares at energies between 6 and 25 keV had some common features: (1) A. separate coronal source up to approx. 30 deg. above the flare loop appeared in the early impulsive phase and stayed stationary for several minutes. (2) Before the flare loop moved upward; previously reported by others, the flare loop-top centroid moved downward for 2-4 minutes during the early impulsive phase of the Ears: falling by 13 - 30% of its initial height with a speed between 8 and 23 km/s. We conclude that these features are associated with the formation and development of a current sheet between the loop-top and the coronal source. In the April 14-15 flare, we find that the hard X-ray flux (greater than 25 keV) is correlated with the rate at which the flare loop moves upward, indicating that the faster the loop grows, the faster the reconnection rate, and therefore, the greater the flux of accelerated electrons. Subject headings: Sun: L'iaies-Sun: X-1-ay-s -

Sui, Lin-Hui↗

Biochemical Kinetics Model of DSB Repair and GammaH2AX FOCI by Non-homologous End Joining

We developed a biochemical kinetics approach to describe the repair of double strand breaks (DSB) produced by low LET radiation by modeling molecular events associated with the mechanisms of non-homologous end-joining (NHEJ). A system of coupled non-linear ordinary differential equations describes the induction of DSB and activation pathways for major NHEJ components including Ku(sub 70/80), DNA-PK(sub cs), and the Ligase IV-XRCC4 hetero-dimer. The autophosphorylation of DNA-PK(sub cs and subsequent induction of gamma-H2AX foci observed after ionizing radiation exposure were modeled. A two-step model of DNA-PK(sub cs) regulation of repair was developed with the initial step allowing access of other NHEJ components to breaks, and a second step limiting access to Ligase IV-XRCC4. Our model assumes that the transition from the first to second-step depends on DSB complexity, with a much slower-rate for complex DSB. The model faithfully reproduced several experimental data sets, including DSB rejoining as measured by pulsed-field electrophoresis (PFGE), quantification of the induction of gamma-H2AX foci, and live cell imaging of the induction of Ku(sub 70/80). Predictions are made for the behaviors of NHEJ components at low doses and dose-rates, where a steady-state is found at dose-rates of 0.1 Gy/hr or lower.

Cucinotta, Francis, A.↗

Homologous Deformation of the Effelsberg 100-m Telescope Determined with a Total Station

Due to gravitation the main reflector of the Effelsberg 100-m telescope of the Max Planck Institute for Radio Astronomy is deformed whenever it is tilted from zenith to arbitrary elevation angles. However, the resulting shape always is a paraboloid again, though with different parameters, a phenomenon which is called homologous deformation. In summer 2008, we have carried out measurements with a total station to determine the magnitude of these deformations in order to evaluate existing assumptions provided by the manufacturer from the telescope's design phase. The measurements are based on a newly developed approach with a Leica TCRP 1201 total station mounted head down near the subreflector. Mini-retro-reflectors are placed at various locations on the paraboloid itself and on the subreflector support structure. The results indicate that the measurement setup is suitable for the purpose and provides the information needed for a determination of elevation dependent delay corrections. The focal length changes only by about 8 mm when the telescope is tilted from 90. to 7.5. elevation angle.

Nothnagel, Axel↗

Three-Dimensional Magnetic Restructuring in Two Homologous Solar Flares in the Seismically Active NOAA AR 11283

We carry out a comprehensive investigation comparing the three-dimensional magnetic field restructuring, flare energy release, and the helioseismic response of two homologous flares, the 2011 September 6 X2.1 (FL1) and September 7 X1.8 (FL2) flares in NOAA AR 11283. In our analysis, (1) a twisted flux rope (FR) collapses onto the surface at a speed of 1.5 km s(exp−1) after a partial eruption in FL1. The FR then gradually grows to reach a higher altitude and collapses again at 3 km s(exp−1) after a fuller eruption in FL2. Also, FL2 shows a larger decrease of the flux-weighted centroid separation of opposite magnetic polarities and a greater change of the horizontal field on the surface. These imply a more violent coronal implosion with corresponding more intense surface signatures in FL2. (2) The FR is inclined northward and together with the ambient fields, it undergoes a southward turning after both events. This agrees with the asymmetric decay of the penumbra observed in the peripheral regions. (3) The amounts of free magnetic energy and nonthermal electron energy released during FL1 are comparable to those of FL2 within the uncertainties of the measurements. (4) No sunquake was detected in FL1; in contrast, FL2 produced two seismic emission sources S1 and S2 both lying in the penumbral regions. Interestingly, S1 and S2 are connected by magnetic loops, and the stronger source S2 has a weaker vertical magnetic field. We discuss these results in relation to the implosion process in the low corona and the sunquake generation.

Sun: X-rays↗

Homologous Flare-CME Events and Their Metric Type II Radio Burst Association

Active region NOAA 11158 produced many flares during its disk passage. At least two of these flares can be considered as homologous: the C6.6 flare at 06:51 UT and C9.4 flare at 12:41 UT on February 14, 2011. Both flares occurred at the same location (eastern edge of the active region) and have a similar decay of the GOES soft X-ray light curve. The associated coronal mass ejections (CMEs) were slow (334 and 337 km/s) and of similar apparent widths (43deg and 44deg), but they had different radio signatures. The second event was associated with a metric type II burst while the first one was not. The COR1 coronagraphs on board the STEREO spacecraft clearly show that the second CME propagated into the preceding CME that occurred 50 min before. These observations suggest that CME-CME interaction might be a key process in exciting the type II radio emission by slow CMEs.

Type II bursts↗

Interaction of plant chimeric calcium/calmodulin-dependent protein kinase with a homolog of eukaryotic elongation factor-1alpha

A chimeric Ca2+/calmodulin-dependent protein kinase (CCaMK) was previously cloned and characterized in this laboratory. To investigate the biological functions of CCaMK, the yeast two-hybrid system was used to isolate genes encoding proteins that interact with CCaMK. One of the cDNA clones obtained from the screening (LlEF-1alpha1) has high similarity with the eukaryotic elongation factor-1alpha (EF-1alpha). CCaMK phosphorylated LlEF-1alpha1 in a Ca2+/calmodulin-dependent manner. The phosphorylation site for CCaMK (Thr-257) was identified by site-directed mutagenesis. Interestingly, Thr-257 is located in the putative tRNA-binding region of LlEF-1alpha1. An isoform of Ca2+-dependent protein kinase (CDPK) phosphorylated multiple sites of LlEF-1alpha1 in a Ca2+-dependent but calmodulin-independent manner. Unlike CDPK, CCaMK phosphorylated only one site, and this site is different from CDPK phosphorylation sites. This suggests that the phosphorylation of EF-1alpha by these two kinases may have different functional significance. Although the phosphorylation of LlEF-1alpha1 by CCaMK is Ca2+/calmodulin-dependent, in vitro binding assays revealed that CCaMK binds to LlEF-1alpha1 in a Ca2+-independent manner. This was further substantiated by coimmunoprecipitation of CCaMK and EF-1alpha using the protein extract from lily anthers. Dissociation of CCaMK from EF-1alpha by Ca2+ and phosphorylation of EF-1alpha by CCaMK in a Ca2+/calmodulin-dependent manner suggests that these interactions may play a role in regulating the biological functions of EF-1alpha.

Non-NASA Center↗

Cloning and characterization of the murine homolog of the sno proto-oncogene reveals a novel splice variant

The cellular function(s) of the SNO protein remain undefined. To gain a better understanding of possible developmental roles of this cellular proto-oncogene, we have cloned two murine sno cDNAs and have investigated their expression patterns in embryonic and postnatal tissues. A single major transcript of 7.5 kb is detected in multiple tissues by Northern blot. However, reverse transcriptase polymerase chain reaction (RT-PCR) and RNAse protection assays revealed a novel splice variant in every tissue examined. Two isoforms, termed sno N and sno-dE3 (dE3, deletion within exon 3), were identified. The sno-dE3 isoform employs a novel 5' splice site located within the coding region of the third exon and deletes potential kinase recognition motifs. Transcripts of both sno isoforms accumulate ubiquitously but are most abundant in the developing central nervous system. The in situ hybridization patterns of sno expression during murine development suggest potential roles in tissues with a high degree of cellular proliferation. Expression in terminally differentiated tissues such as muscle and neurons indicates that SNO may have multiple functional activities.

Non-NASA Center↗