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At least 37 records · Page 2

Comparative Analysis of the Powers of the Two-Sample Kolmogorov–Smirnov and Anderson–Darling Tests Under Various Alternatives

In this paper we conduct a comparative analysis of the powers of the two-sample Kolmogorov–Smirnov and Anderson–Darling tests under various alternatives using simulation. We consider two examples. In the first example the alternatives to the standard normal distribution are the distributions of the so-called contaminated normal model. We study the influence of a small contamination with a positive shift on the powers of the test. In the second example the alternatives are the logistic and the Laplace distributions, which are symmetric and differ in shape from the normal distribution having a larger kurtosis coefficient and heavier tails.

97 MATHEMATICS AND COMPUTING↗

maranasgroup/uncFBA

In the repository are example scripts that perform uncertainty injection and propagation to flux balance analysis with outputs for a small sample size (for demonstration purpose only). For proper analysis, user should download the scripts and run for a large sample size (e.g., 10,000 samples). If you use the scripts, please cite the following Metabolic Engineering article: “Quantifying the propagation of parametric uncertainty on flux balance analysis” (https://doi.org/10.1016/j.ymben.2021.10.012) There are two subdirectories: /uncFBA/uncBiom: injection of normally distributed noise to biomass precursor coeffcients and ATP maintenance (growth-associated ATP maintenance (GAM) and non-growth associated ATP maintenance (NGAM)) /uncFBA/uncRHS: departure from steady-state by adding noise drawn from normal distribution to the RHS terms of mass balance constraints

Dinh, Hoang↗

Quantitation of amiodarone and N-desethylamiodarone in single HepG2 cells by single-cell printing-liquid vortex capture-mass spectrometry

Quantitative measure of a drug and its associated metabolite(s) with single-cell resolution is often limited by sampling throughput or other compromises that limit broad use. Here, we demonstrate the use of single-cell printing-liquid vortex capture-mass spectrometry (SCP-LVC-MS) to quantitatively measure the intracellular concentrations of amiodarone (AMIO) and its metabolite, N-desethylamiodarone (NDEA), from thousands of single cells across several AMIO incubation concentrations ranging from 0 to 10 μM. Concentrations obtained by SCP-LVC-MS were validated through comparison with average assays and traditional measurement of cells in bulk. Average of SCP-LVC-MS measurements and aggregate vial collection assay the concentrations differed by < 5%. Both AMIO and NDEA had clear log-normal distributions with similar standard deviation of concentrations in the cell population. The mean of both AMIO and NDEA intracellular concentrations were positively correlated with AMIO incubation concentration, increasing from 0.026 to 0.520 and 0.0055 to 0.048 mM for AMIO and NDEA, respectively. The standard deviation of AMIO and NDEA log-normal distribution fits were relatively similar in value across incubation concentrations, 0.15–0.19 log 10 (mM), and exhibited a linear trend with respect to each other. The single cell-resolved conversion ratio of AMIO to NDEA increased with decreasing incubation concentration, 7 ± 2%, 18 ± 3%, and 20 ± 7% for 10.0, 1.0, and 0.1 μM AMIO incubation concentrations, respectively. Finally, association with simultaneously measured lipids had several ions with statistically significant difference in intensity but no clear correlations with AMIO intracellular content was observed.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The Nickel Mass Distribution of Normal Type II Supernovae

Core-collapse supernova (SN) explosions expose the structure and environment of massive stars at the moment of their death. We use the global fitting technique of Pejcha and Prieto to estimate a set of physical parameters of 19 normal SNe II, such as their distance moduli, reddenings, {sup 56}Ni masses M{sub Ni}, and explosion energies E{sub exp} from multicolor light curves and photospheric velocity curves. We confirm and characterize known correlations between M{sub Ni} and bolometric luminosity at 50 days after the explosion, and between M{sub Ni} and E{sub exp}. We pay special attention to the observed distribution of M{sub Ni} coming from a joint sample of 38 SNe II, which can be described as a skewed-Gaussian-like distribution between 0.005 M{sub ⊙} and 0.280 M{sub ⊙}, with a median of 0.031 M{sub ⊙}, mean of 0.046 M{sub ⊙}, standard deviation of 0.048 M{sub ⊙}, and skewness of 3.050. We use a two-sample Kolmogorov–Smirnov test and two-sample Anderson–Darling test to compare the observed distribution of M{sub Ni} to results from theoretical hydrodynamical codes of core-collapse explosions with the neutrino mechanism presented in the literature. Our results show that the theoretical distributions obtained from the codes tested in this work, KEPLER and Prometheus Hot Bubble, are compatible with the observations irrespective of different pre-SN calibrations and different maximum mass of the progenitors.

79 ASTRONOMY AND ASTROPHYSICS↗

Testing Nesting DXTRAN Spheres for Neutron Transport in Air

The deterministic transport sphere (DXTRAN sphere) is a technology that can be utilized in MCNP for improving sampling in the vicinity of a particular geometry, when the solid angle, between the source and particular geometry, is small. At a collision event, a DXTRAN particle is created and deterministically transported to the DXTRAN sphere, while the colliding particle (NONDXTRAN particle) continues transporting as if no DXTRAN event had occurred. Weight is balanced by killing the NONDXTRAN particle when traversing the DXTRAN sphere. If set up correctly, the DXTRAN particle placed on the DXTRAN sphere has a high probability of interacting with the geometry within the DXTRAN sphere. The Central Limit Theorem (CLT) states that the estimated mean approaches a normal distribution with known variance as the number of random samples grows sufficiently large. In reality the variance is seldom known and therefore must be estimated. In a Monte Carlo calculation, one must determine when the number of random samples is sufficiently large for the CLT to be satisfied. For the CLT to be satisfied, the first two moments (mean and variance) must exist. The second moment, the variance of a normal distribution is estimated. The slope test, which uses the largest 201 history scores of each tally fluctuation chart (TFC) bin fit to a Pareto function, is used to determine if the largest history scores decrease faster than 1/x{sup 3}. If the slope is less than 3, then enough histories have not yet been sampled such to meet the second moment existence requirement of the CLT. Usually, a slope of less than 3 indicates that the effects of high weight scores have not been satisfactorily sampled; such a consequence can also be manifested in examining trends in the 4. moment, the variance of the variance (VOV). For example, when examining the TFC, if the VOV is monotonically decreasing for a few sets of histories and then drastically increases for the next set of histories, chances are a rare high weight score, significantly greater than the average score, was encountered. As a result of the 1/R{sup 2} term, a point detector can achieve an extremely high weight, much greater than the average, as the distance from collision to point detector approaches zero. To remedy this difficulty, a 'radius of exclusion' is applied, where within the radius of exclusion 'the point detector estimate is assumed to be the average flux uniformly distributed'. A DXTRAN sphere can suffer from the same weight fluctuation as collisions in the vicinity of the DXTRAN sphere produce much larger weights than collisions happening far from the DXTRAN sphere. If the rare large weight put on the DXTRAN sphere then scores in a tally, there will be a significant increase in the VOV and the slope may drop below 3. To compliment that analysis, here we utilize an air composition and density that varies as a function of altitude, detailing the trials and tribulations of attempting to pass the 10 statistical checks for a variety of single and nested DXTRAN sphere approaches. The objective here is to illuminate important considerations for radiation transport problems with small solid angles in a scatter medium of few mean free paths (MFPs)

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Formulation of autoconversion and drop spectra shape in shallow cumulus clouds

Two-moment autoconversion parameterizations as compared to accretion parameterizations exhibit significant errors suggesting that additional moments are needed to increase their accuracy. We develop a three-moment autoconversion parameterization using output from an LES model with size-resolved microphysics. Adding the third moment decreases the errors of parameterization and improves precipitation prediction. However, the errors are still significantly larger than errors of accretion rate. An analysis of the cloud drop size distributions (DSDs) in the simulated tropical convective cloud system reveals that most of DSDs have a significant fraction of cloud liquid water content (qc) in the mid-size droplet range (radii from 20 to 40 microns). Our data indicates that more than 30% of DSDs have over half of qc contained in the mid-size range and about 60% of spectra have, at least, one third of qc in this range. Even when the rain/drizzle mode is small (radar reflectivity Z < -10 dBZ), there is a significant number of spectra in which fraction of qc in the mid-size range is as large as 60%. These DSDs are more complex than the frequently used single-mode Gamma or Log-normal distributions, which usually do not have a considerable tail extending to the mid-size range and can be defined by three microphysical moments. The need to define DSDs by more than three moments explains the large errors in the three-moment autoconversion parameterization. The limitation of three-parameter Gamma or Log-normal distributions should be kept in mind when applying them in precipitating shallow Cu clouds.

Kogan, Yefim↗

Constraining baryon annihilation in the hadronic phase of heavy-ion collisions via event-by-event fluctuations

We point out that the variance of net-baryon distribution normalized by the Skellam distribution baseline, κ 2 [$B-\overline{B}$]/$\langle B+\overline{B} \rangle$, is sensitive to the possible modification of (anti)baryon yields due to $B\overline{B}$ annihilation in the hadronic phase. The corresponding measurements can thus place stringent limits on the magnitude of the $B\overline{B}$ annihilation and its inverse reaction. We perform Monte Carlo simulations of the hadronic phase in Pb-Pb collisions at the LHC via the recently developed subensemble sampler + UrQMD afterburner and show that the effect survives in net-proton fluctuations, which are directly accessible experimentally. The available experimental data of the ALICE Collaboration on net-proton fluctuations disfavors a notable suppression of (anti)baryon yields in $B\overline{B}$ annihilations predicted by the present version of UrQMD if only global baryon conservation is incorporated. On the other hand, the annihilations improve the data description when local baryon conservation is imposed. The two effects can be disentangled by measuring κ 2 [$B-\overline{B}$]/$\langle B+\overline{B} \rangle$, which at the LHC is notably suppressed by annihilations but virtually unaffected by baryon number conservation.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Quantifying the unknown impact of segmentation uncertainty on image-based simulations

Abstract Image-based simulation, the use of 3D images to calculate physical quantities, relies on image segmentation for geometry creation. However, this process introduces image segmentation uncertainty because different segmentation tools (both manual and machine-learning-based) will each produce a unique and valid segmentation. First, we demonstrate that these variations propagate into the physics simulations, compromising the resulting physics quantities. Second, we propose a general framework for rapidly quantifying segmentation uncertainty. Through the creation and sampling of segmentation uncertainty probability maps, we systematically and objectively create uncertainty distributions of the physics quantities. We show that physics quantity uncertainty distributions can follow a Normal distribution, but, in more complicated physics simulations, the resulting uncertainty distribution can be surprisingly nontrivial. We establish that bounding segmentation uncertainty can fail in these nontrivial situations. While our work does not eliminate segmentation uncertainty, it improves simulation credibility by making visible the previously unrecognized segmentation uncertainty plaguing image-based simulation.

42 ENGINEERING↗

Linewidth broadening and tunneling of excitons bound to N pairs in dilute GaAs:N

The exciton bound to a pair of nitrogen atoms situated at nearby lattice sites in dilute GaAs:N provides an energetically uniform electronic system, spectrally distinct from pairs with larger or smaller separations, and can even be grown with a uniform pair orientation in the crystal. We use photoluminescence excitation spectroscopy on an ensemble of N pairs to study the narrow continuous energy distribution within two of the individual exchange- and symmetry-split exciton states. Inhomogeneous linewidths of 50-60 ueV vary across the crystal on a mesoscopic scale and can be 30 ueV at microscopic locations indicating that the homogeneous linewidth inferred from previous time-domain measurements is still considerably broadened. While excitation and emission linewidths are similar, results show a small energy shift between them indicative of exciton transfer via phonon-assisted tunneling between spatially separated N pairs. We numerically simulate the tunneling in a spatial network of randomly distributed pairs having a normal distribution of bound exciton energies. Comparing the ensemble excitation-emission energy shift with the measured results shows that the transfer probability is higher than expected from the dilute pair concentration and what is known of the exciton wavefunction spatial extent. Both the broadening and the exciton transfer have implications for the goal of pair-bound excitons as a single- or multi-qubit system.

36 MATERIALS SCIENCE↗

Chandra measurements of gas homogeneity and turbulence at intermediate radii in the Perseus Cluster

ABSTRACT We present a Chandra study of surface brightness fluctuations in the diffuse intracluster medium of the Perseus Cluster. Our study utilizes deep, archival imaging of the cluster core as well as a new mosaic of 29 short $\, 5\,$-ks observations extending in eight different directions out to radii of $r_{500} \sim 2.2\, r_{2500}$. Under the assumption that the distribution of densities at a given radius is log-normally distributed, two important quantities can be derived from the width of the log-normal density distribution on a given spatial scale: the density bias, that is equal to the square root of the clumping factor C; and the one-component turbulent velocity, vk,1D. We forward-model all contributions to the measured surface brightness, including astrophysical and particle background components, and account for the Poisson nature of the measured signal. Measuring the distribution of surface brightness fluctuations in 1 arcmin2 regions, spanning the radial range $0.3\rm {-}2.2\, r_{2500}$ ($7.8\rm {-}57.3\,$ arcmin), we find a small to moderate average density bias of around $3{{\ \rm per\ cent}}$ at radii below $1.6\, r_{2500}$. We also infer an average turbulent velocity at these radii of V1D < 400 km s−1. Direct confirmation of our results on turbulent velocities inferred from surface brightness fluctuations should be possible using the X-ray calorimeter spectrometers to be flown aboard the XRISM and Athena observatories.

79 ASTRONOMY AND ASTROPHYSICS↗

Composited structure of non-precipitating shallow cumulus clouds

The normalized distributions of thermodynamic and dynamical variables both within and outside shallow clouds are investigated through a composite algorithm using large-eddy simulations of oceanic and continental cases. The normalized magnitude is maximum near the cloud centre and decreases outwards. While relative humidity (RH) and cloud liquid water ( q l ) decrease smoothly to match the environment, the vertical velocity, virtual potential temperature (θ v ), and potential temperature (θ) perturbations have more complicated behaviour towards the cloud boundary. Below the inversion layer, θ' v becomes negative before the vertical velocity has turned from an updraft to a subsiding shell outside the cloud, indicating the presence of a transition zone where the updraft is negatively buoyant. Due to the downdraft outside the cloud and enhanced horizontal turbulent mixing across the edge, the normalized turbulent kinetic energy (TKE) and horizontal turbulent kinetic energy (HTKE) decrease more slowly from the cloud centre outwards than the thermodynamic variables. The distributions all present asymmetric structures in response to the vertical wind shear, with more negatively buoyant air, stronger downdrafts, and larger TKE on the downshear side. We discuss several implications of the distributions for theoretical models and parameterizations. Positive buoyancy near the cloud base is mostly due to the virtual effect of water vapour, emphasizing the role of moisture in triggering. The mean vertical velocity is found to be approximately half the maximum vertical velocity within each cloud, providing a constraint to achieve possible power-law distributions for some models. Finally, the normalized distributions for different variables are used to estimate the vertical heat and moisture fluxes within clouds. The results suggest that distributions near the cloud edge and variability of maximum perturbations need careful treatment. The fluxes are underestimated in the inversion layer because cloud-top downdrafts cannot be captured well.

54 ENVIRONMENTAL SCIENCES↗

Analytical Methods of Approximating the Fisher Information Matrix for the Lognormal Distribution

Modelling the matter density in the universe through time has become one of the most important open problems in cosmology. One distribution that works particularly well is the lognormal distribution, where if Y follows a lognormal distribution, ln Y follows a normal distribution. In many cases, we want to know how much information a variable carries about some unknown parameter; this can be accomplished by calculating the Fisher information matrix. However, for the lognormal distribution, the Fisher matrix is much more complicated to evaluate in closed form. In this paper, we will look at some analytical methods to evaluate the Fisher matrix.

79 ASTRONOMY AND ASTROPHYSICS↗

The Effect Of Ionization Variance On Nuclear-recoil Dark Matter Searches

Direct detection dark matter experiments are increasingly interested in the low-mass dark matter parameter space, but zero-background low-mass searches require event separation between the electron and nuclear recoil bands, which requires a proper understanding of detector energy reconstruction. Previous simulations have shown that we do not entirely understand the ionization efficiency (yield) for electron and nuclear recoils, as the assumption that the distribution for the yield is normally distributed for a true recoil energy is violated. Since the yield distribution may directly affect dark matter low-mass limits, it is crucial we understand how the yield is distributed. A component to understanding the yield distribution is the variance in the number of electron-hole pairs produced or ionization variance. This effect has been studied relatively infrequently as experiments have been interested in large energy deposits (10 - 100 keV) and could accurately separate electron and nuclear recoil events. For electron recoils, the ionization variance is described by a “Fano” factor. For nuclear recoils the effect can be parameterized by an “effective” Fano factor, which has similar definition but a different physical origin. The nuclear recoil “effective” Fano factor is shown to be much larger than the electron-recoil version above around 10 keV deposited energy.

Matheny, Mitchell Douglas↗

Seawater sea-sand engineered/strain-hardening cementitious composites (ECC/SHCC): Assessment and modeling of crack characteristics

Highlights: • A probabilistic model was proposed to model the crack width evolution of SS-ECC at different strain levels. • The Weibull distribution fit the crack width distribution better than the log-normal distribution. • A 5-D representation was proposed to assess the SS-ECC by considering both cracking and mechanical performance. • Larger sea-sand size and lower fiber dosage led to larger crack widths in SS-ECC under the same tensile strain. • 18-mm PE fiber led to larger crack widths in SS-ECC at strain >2%, due to a large fraction of fiber rupture. Seawater sea-sand Engineered Cementitious Composites (SS-ECC) is a new version of ECC for marine constructions facing the scarcity of freshwater and river/manufactured sand. This study aims to assess and model the crack characteristics of SS-ECC, which are critical for its applications with non-corrosive reinforcements. The influence of sea-sand size, fiber length and fiber dosage on the crack characteristics of SS-ECC was explored. A five-dimensional representation was proposed to assess the overall performance of SS-ECC, by comprehensively considering both the crack characteristics (i.e., crack width and its variation) and the mechanical properties (i.e., compressive and tensile properties). A probabilistic model was also proposed to describe the stochastic nature and evolution of crack width, and it can be used to estimate the critical tensile strain on SS-ECC for a given crack-width limit and cumulative probability. The findings and proposed methods can facilitate the design of SS-ECC in marine and coastal structures.

36 MATERIALS SCIENCE↗

Clutter Distributions for Tomographic Image Standardization in Ground-Penetrating Radar

Multistatic ground-penetrating radar (GPR) signals can be imaged tomographically to produce 3-D distributions of image intensities. In the absence of objects of interest, these intensities can be considered to be estimates of clutter. These clutter intensities spatially vary over several orders of magnitude and vary across different arrays, which makes a direct comparison of these raw intensities difficult. However, by gathering statistics on these intensities and their spatial variation, a variety of metrics can be determined. In this study, the clutter distribution is found to fit better to a two-parameter Weibull distribution than Gaussian or log-normal distributions. Based on the spatial variation of the two Weibull parameters, scale and shape, more information may be gleaned from these data. How well the GPR array is illuminating various parts of the ground, in depth and cross track, may be determined from the spatial variation of the Weibull scale parameter, which may in turn be used to estimate an effective attenuation coefficient in the soil. The transition in depth from clutter- to noise-limited conditions (which is one possible definition of GPR penetration depth) can be estimated from the spatial variation of the Weibull shape parameter. Lastly, the underlying clutter distributions also provide an opportunity to standardize image intensities to determine when a statistically significant deviation from background (clutter) has occurred, which is convenient for buried threat detection algorithm development that needs to be robust across multiple different arrays.

42 ENGINEERING↗

Distributions of the Mean for Lognormally Distributed Data - 19427

In environmental sciences, a distribution of the mean is often needed for right-skewed data. For example, risk assessments are often based on distributions of the mean to obtain upper confidence limits (UCLs) for analyte concentrations, and, in probabilistic performance assessment (PPA) models, parameters are given distributions rather than deterministic values, and they are usually given distributions of their mean rather than the population distributions to account for the large spatial and temporal domains to which they are applied. How this distribution of the mean is developed depends on the characteristics of the parameter's full distribution and how the parameter relates to its use. In this presentation, I will discuss the implications of a right skew in distribution development. Parameters may vary over orders of magnitude and/or may be right-skewed. The material property of saturated hydraulic conductivity, Ks, is a prime example of such a parameter. Right-skewed parameters are often assumed to follow lognormal distributions. If X follows a lognormal distribution, then log(X) follows a normal distribution. For some right-skewed parameters, practitioners go back and forth between the two forms of the data depending on their needs. For example, it may be preferred to use the untransformed version of X in a model or equation, but it is easier to visualize the parameter values on a logarithmic scale. However, distribution development for the average value of the parameter will differ depending on whether X or log(X) is modeled. This difference is due to Jensen's Inequality, a theorem which states that the expected value of a concave function of a variable is less than or equal to the same function of the expected value of the variable; a logarithm is a concave function. In other words, the mean of log(X) is always less than or equal to the log of the mean of X and therefore the mean estimated from a distribution based on log(X) is less than or equal to the mean estimated from a distribution based on X. If a parameter is naturally considered on a log scale by subject matter experts, then distributions developed for the mean of log(X) may be more consistent with the use of the parameters in the literature than distributions developed for X. The statistical decisions of distribution development will be discussed within the context of right-skewed, lognormal data. These issues include method-of-moments versus maximum likelihood estimation of the distribution parameters and the use of bootstrapping to aid in the visualization of a distribution of the mean. The details surrounding Jensen's Inequality will be explained and visualized within the context of distribution development of a right-skewed parameter such as saturated hydraulic conductivity. (authors)

54 ENVIRONMENTAL SCIENCES↗

A Further Study of the t{sub Burst} of GRBs: Rest-frame Properties, External Plateau Contributions, and Multiple Parameter Analysis

Zhang et al. propose to redefine the true γ-ray burst (GRB) central engine activity duration, t{sub burst}, by considering the contributions from the prompt γ-ray emission, X-ray flare, and internal plateau features. With a comprehensive study of a large sample of Swift GRBs, it is shown that the t{sub burst} distribution in the observer frame consists of a bimodal feature, suggesting the existence of a new population of ultra-long GRBs. In this work, we make a series of further studies on t{sub burst}: we update the Swift GRB sample up to 2016 June; we investigate the properties of t{sub burst} distribution in the rest frame; we redefine t{sub burst} by involving external plateau contributions; and we make a multiple parameter analysis to investigate whether the bursts within the ultra-long population are statistically different in the sense of other features besides the duration distribution. We find that for all situations, the distribution of t{sub burst} requires two normal distributions in logarithmic space to provide a good fit both in the observer frame and in the rest frame. Considering the observational gap effect would not completely erase the bimodal distribution feature. However, the bursts within the ultra-long population may have no statistical difference in the sense of other features besides the duration term. We thus suggest that if the ultra-long population of GRBs indeed exists, their central engine and radiation mechanisms should be similar to those of the normal population, but they have a longer central engine activity timescale.

79 ASTRONOMY AND ASTROPHYSICS↗