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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 37 records · Page 2
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Global Ocean Cooling of 2.3°C During the Last Glacial Maximum

Abstract Quantitative constraints on past mean ocean temperature (MOT) critically inform our historical understanding of Earth's energy balance. A recently developed MOT proxy based on paleoatmospheric Xe, Kr, and N 2 ratios in ice core air bubbles is a promising tool rooted in the temperature dependences of gas solubilities. However, these inert gases are systematically undersaturated in the modern ocean interior, and it remains unclear how air‐sea disequilibrium may have changed in the past. Here, we carry out 30 tracer‐enabled model simulations under varying circulation, sea ice cover, and wind stress regimes to evaluate air‐sea disequilibrium in the Last Glacial Maximum (LGM) ocean. We find that undersaturation of all three gases was likely reduced, primarily due to strengthened high‐latitude winds, biasing reconstructed MOT by −0.38 ± 0.37°C (1σ). Accounting for air‐sea disequilibrium, paleoatmospheric inert gases indicate that LGM MOT was 2.27 ± 0.46°C (1σ) colder than the pre‐industrial era.

Seltzer, A. M.↗
DOE OSTI2023

The QBO–MJO Connection: A Possible Role for the SST and ENSO

We examine the hypothesis that the observed connection between the stratospheric quasi-biennial oscillation (QBO) and the strength of the Madden–Julian oscillation (MJO) is modulated by the sea surface temperature (SST)—for example, by El Niño–Southern Oscillation (ENSO). A composite analysis shows that, globally, La Niña SSTs are remarkably similar to those that occur during the easterly phase of the QBO. A maximum covariance analysis suggests that MJO power and SST are strongly linked on both the ENSO time scale and the QBO time scale. We analyze simulations with a modified configuration of version 2 of the Community Earth System Model, with a high top and fine vertical resolution. The model is able to simulate ENSO, the QBO, and the MJO. The ocean-coupled version of the model simulates the QBO, ENSO, and MJO, but does not simulate the observed QBO–MJO connection. When driven with prescribed observed SST anomalies based on composites for QBO east and QBO west (QBOE and QBOW), however, the same atmospheric model produces a modest enhancement of MJO power during QBOE relative to QBOW, as observed. We explore the possibility that the SST anomalies are forced by the QBO itself. Indeed, composite Hovmöller diagrams based on observations show the propagation of QBO zonal wind anomalies all the way from the upper stratosphere to the surface. Also, subsurface ocean temperature composites reveal a similarity between the western Pacific and Indian Ocean subsurface signal between La Niña and QBOE.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Oceanographic Conditions. 2007 - 2040. North Slope Alaska.

Complete representations of oceanographic conditions require spatial and temporal information about the significant wave height (Hs), peak wave period (Tp), wind speed, wind direction, wave direction, water level, salinity, and temperature. This data develops location-independent typologies to reduce the number of boundary conditions needed to assess nearshore oceanographic environments in both a Historical (2007-2019) and Future (2020-2040) timespan along the Alaskan North Slope. Wave information for both time spans were generated from WaveWatch III, Delft3D-FLOW, and Delft3D-WAVE simulations forced by wind conditions from reanalysis data (e.g., ASRv2 and ERA5) for the historical simulations while projected conditions were obtained from downscaled GFDL-CM3 forced under RCP8.5 conditions. Salinity was generated from GOFS 3.1 for the years between 2008-2015 and skin temperature of the ocean was obtained from ASRv2 reanalysis data for the years between 2007-2016. To identify generalized oceanographic typologies, K-means clustering was applied to the energy-weighted joint-probability distribution of Hs and Tp at six sites along the North Slope of Alaska. Distributions of wave and wind direction, wind speed, and water level associated with locaiton-indepndent centroids were assigned single values to describe a reduced order, typological rendition of offshore oceanographic conditions. These final typologies and their constituent data are provided here and can be used to evaluate the change in ocean energy over the next two decades in response to climate change and provide insight into expected consequences such as coastal erosion and flooding. A full assessment of the findings and techniques developed can be found in: Eymold, W.K., Flanary, C., Erikson, L., Nederhoff, K., Chartrand, C.C., Jones, C., Kasper, J., and Bull, D.L. Typological Representation of the Offshore Oceanographic Environment along the Alaskan North Slope. Continental Shelf Research (2022). 10.1016/j.csr.2022.104795

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Ice-shelf ocean boundary layer dynamics from large-eddy simulations

Abstract. Small-scale turbulent flow below ice shelves is regionally isolated and difficult to measure and simulate. Yet these small-scale processes, which regulate heat and salt transfer between the ocean and ice shelves, can affect sea-level rise by altering the ability of Antarctic ice shelves to “buttress” ice flux to the ocean. In this study, we improve our understanding of turbulence below ice shelves by means of large-eddy simulations at sub-meter resolution, capturing boundary layer mixing at scales intermediate between laboratory experiments or direct numerical simulations and regional or global ocean circulation models. Our simulations feature the development of an ice-shelf ocean boundary layer through dynamic ice melting in a regime with low thermal driving, low ice-shelf basal slope, and strong shear driven by the geostrophic flow. We present a preliminary assessment of existing ice-shelf basal melt parameterizations adopted in single component or coupled ice-sheet and ocean models on the basis of a small parameter study. While the parameterized linear relationship between ice-shelf melt rate and far-field ocean temperature appears to be robust, we point out a little-considered relationship between ice-shelf basal slope and melting worthy of further study.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Stratospheric Aerosol Injection Can Reduce Risks to Antarctic Ice Loss Depending on Injection Location and Amount

Owing to increasing greenhouse gas emissions, the Antarctic Ice Sheet is vulnerable to rapid ice loss in the upcoming decades and centuries. Here this study examines the effectiveness of using stratospheric aerosol injection (SAI) that minimizes global mean temperature (GMT) change to slow projected 21st century Antarctic ice loss. We simulate 11 different SAI cases which vary by the latitudinal location(s) and the amount(s) of the injection(s) to examine the climatic response near Antarctica in each case as compared to the reference climate at the turn of the last century. We demonstrate that injecting at a single latitude in the northern hemisphere or at the Equator increases Antarctic shelf ocean temperatures pertinent to ice shelf basal melt, while injecting only in the southern hemisphere minimizes this temperature change. We use these results to analyze the results of more complex multi-latitude injection strategies that maintain GMT at or below 1.5°C above the pre-industrial. All these multi-latitude cases will slow Antarctic ice loss relative to the mid-to-late 21st century SSP2-4.5 emissions pathway. Yet, to avoid a GMT threshold estimated by previous studies pertaining to rapid West Antarctic ice loss (1.5°C above the pre-industrial GMT, though large uncertainty), our study suggests SAI would need to cool about 1.0°C below this threshold and predominately inject at low southern hemisphere latitudes (~15°S - 30°S). These results highlight the complexity of factors impacting the Antarctic response to SAI and the critical role of the injection strategy in preventing future ice loss.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Influence of Antarctic and Greenland Continental Shelf Circulation on High‐Latitude Oceans in E3SM

The science objectives of this project are to simulate and understand the impacts of both deep-basin warm-water intrusions and land-ice melt on the continental shelf circulations and sea-ice distributions around the margins of Greenland and Antarctica. As well, the role of subsurface ocean heat from the Atlantic on declining sea-ice cover in the Arctic is explored. Mesoscale processes and fine bathymetry are implicated in cross-shelf property transports around both Greenland and Antarctica. Therefore, we configured and ran an atmospheric reanalysis-forced global ocean/sea-ice simulation on a grid that reduces from 8 km at the Equator to 2 km at the poles (UH8to2) with 60 vertical levels. It was produced using the Energy Exascale Earth System Model ‘‘HiLAT’’ code (E3SMv0-HiLAT) that uses the Parallel Ocean Program (POP) and CICE5 as its ocean and sea-ice components, respectively. Two main UH8to2 simulations were carried out: one for 1975-2009 and the other for July 2016-2020 after it was initialized from a 1/25° data-assimilative ocean/sea-ice prediction system ocean/sea-ice state. The UH8to2 is not coupled to an active land-ice model. Rather, land-ice melt is represented by observationally informed freshwater fluxes (FWFs). Short (multi-year) UH8to2 simulations were conducted to understand sensitivities when Greenland ice sheet (GrIS) melt is released only at the ocean surface or when it is distributed over the upper water column in accordance with fjord melt plume behavior; these cases were compared with a no GrIS melt case. West Greenland continental shelf currents were fastest in the vertical distribution case and an increase in baroclinic conversion at the shelf break associated with increased eddy kinetic energy was found relative to the surface release case. Further, salinity is lower and meltwater volume greater in the eastern Labrador Sea in the vertical distribution case. For the Arctic, the veracity of the UH8to2 was evaluated for 2017-2020 using available observations. Simulated seasonal sea-ice thickness and concentration are realistic, but the ice is unrealistically thin in the central and eastern Arctic in the fall. Comparisons of vertical sections of ocean temperature, salinity, and buoyancy collected from Ice-Tethered Profilers (ITPs) in the eastern Arctic in the fall and winter of 2019/2020 and co-located/concurrent UH8to2 fields show the stratification over the top 100 m of the water column is too low in the model, the simulated mixed layer too deep, and the simulated subsurface Atlantic Water (AW) too warm; these biases may contribute to the sea-ice biases. A model intercomparison study using the UH8to2 and a forced 1/25° regional Arctic ocean/sea-ice (uses the HYbrid Coordinate Ocean Model and CICE5) simulation further investigates the relationship between AW and sea-ice in the eastern Arctic. The models show a mesoscale-rich pulse of Atlantic Water extending into the eastern basin that reaches maximum intensity in late winter of 2018, after which it decreases in strength. Concurrent and co-located sea-ice melt or the inhibition of sea-ice growth is seen and is attributed to halocline mesoscale eddies doming into the mixed layer with convection bringing this heat into the vicinity of the sea-ice.

58 GEOSCIENCES↗
DOE OSTI2025

Evaluating the carbon capture potential of industrial waste as a feedstock for enhanced weathering

Abstract Limiting anthropogenic global climate warming since the start of the industrial period to less than 2 °C will very likely require both deep and rapid reductions in anthropogenic greenhouse gas emissions and a range of approaches toward carbon dioxide removal (CDR). One prominent CDR approach is enhanced weathering (EW), in which crushed silicate rock is applied on land or in the open ocean to accelerate natural weathering processes that absorb carbon dioxide from Earth’s ocean–atmosphere system. However, in addition to a range of potential environmental, socioeconomic, and ethical issues associated with this pathway, bottlenecks in feedstock sourcing represent a key barrier for deployment of EW at scale. Here, we evaluate the potential of silicate wastes produced from industrial processes—such as steel slag and cement waste—as feedstocks for the EW process. An empirical model that links industrial alkaline waste production to gross domestic product at purchase power parity is developed to forecast waste production in the alternative futures described by the shared socioeconomic pathway (SSP) framework. By incorporating these results into an intermediate-complexity Earth system model, we also explore the impacts of EW using industrial waste on changes to global temperature, ocean pH, and ocean aragonite saturation state, while also quantifying overall CDR efficiency through the end of the century. We estimate a maximum cumulative end-of-century capture potential of ∼400 GtCO 2 for industrial waste, which could represent a significant fraction of the projected CDR requirement of many mitigation scenarios in the SSP framework. However, feedstock-dependent environmental impacts and the technoeconomics of feedstock redistribution may ultimately limit deployment scope.

Xu, Pengxiao (ORCID:0009000633724293)↗
DOE OSTI2022

Typological representation of the offshore oceanographic environment along the Alaskan North Slope

Erosion and flooding impacts to Arctic coastal environments are intensifying with nearshore oceanographic conditions acting as a key environmental driver. Robust and comprehensive assessment of the nearshore oceanographic conditions require knowledge of the following boundary conditions: incident wave energy, water level, incident wind energy, ocean temperature and salinity, bathymetry, and shoreline orientation. The number of offshore oceanographic boundary conditions can be large, requiring a significant computational investment to reproduce nearshore conditions. This present study develops location-independent typologies to reduce the number of boundary conditions needed to assess nearshore oceanographic environments in both a Historical (2007–2019) and Future (2020–2040) timespan along the Alaskan North Slope. We used WAVEWATCH III® and Delft3D Flexible Mesh model output from six oceanographic sites located along a constant ~50 m bathymetric line spanning the Chukchi to Beaufort Seas. K-means clustering was applied to the energy-weighted joint-probability distribution of significant wave height (H s ) and peak period (T p ). Distributions of wave and wind direction, wind speed, and water level associated with location-independent centroids were assigned single values to describe a reduced order, typological rendition of offshore oceanographic conditions. Reanalysis data (e.g., ASRv2, ERA5, and GOFS) grounded the historical simulations while projected conditions were obtained from downscaled GFDL-CM3 forced under RCP8.5 conditions. Location-dependence for each site is established through the occurrence joint-probability distribution in the form of unique scaling factors representing the fraction of time that the typology would occupy over a representative year. As anticipated, these typologies show increasingly energetic ocean conditions in the future. They also enable computationally efficient simulation of the nearshore oceanographic environment along the North Slope of Alaska for better characterization of coastal processes (e.g., erosion, flooding, or sediment transport).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Statistical emulation of a perturbed basal melt ensemble of an ice sheet model to better quantify Antarctic sea level rise uncertainties

Abstract. Antarctic ice shelves are vulnerable to warming ocean temperatures, and some have already begun thinning in response to increased basal melt rates. Sea level is therefore expected to rise due to Antarctic contributions, but uncertainties in its amount and timing remain largely unquantified. In particular, there is substantial uncertainty in future basal melt rates arising from multi-model differences in thermal forcing and how melt rates depend on that thermal forcing. To facilitate uncertainty quantification in sea level rise projections, we build, validate, and demonstrate projections from a computationally efficient statistical emulator of a high-resolution (4 km) Antarctic ice sheet model, the Community Ice Sheet Model version 2.1. The emulator is trained to a large (500-member) ensemble of 200-year-long 4 km resolution transient ice sheet simulations, whereby regional basal melt rates are perturbed by idealized (yet physically informed) trajectories. The main advantage of our emulation approach is that by sampling a wide range of possible basal melt trajectories, the emulator can be used to (1) produce probabilistic sea level rise projections over much larger Monte Carlo ensembles than are possible by direct numerical simulation alone, thereby providing better statistical characterization of uncertainties, and (2) predict the simulated ice sheet response under differing assumptions about basal melt characteristics as new oceanographic studies are published, without having to run additional numerical ice sheet simulations. As a proof of concept, we propagate uncertainties about future basal melt rate trajectories, derived from regional ocean models, to generate probabilistic sea level rise estimates for 100 and 200 years into the future.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

Resource assessment of ocean thermal energy conversion in Puerto Rico and U.S. Virgin Islands

Island communities often struggle to establish and maintain traditional electric grids and are therefore heavily reliant on costly imported fossil fuels. In the case of Puerto Rico, these challenges are enhanced by extreme weather and other natural hazards that threaten the local electricity generation and transmission infrastructure. Ocean thermal energy conversion (OTEC) could play an important role in establishing a more resilient electrical grid in the region. Here, in this study, a detailed analysis is conducted to characterize the ocean thermal resource and power potential of OTEC in Puerto Rico based on a 14-year dataset of modeled ocean temperature. The assessment considers seasonal and interannual variability in the region's thermal resource and examines the operational limitations associated with minimal thermal gradients required to run a typical OTEC heat engine. Notably, the local thermal resource is found to be sensitive to El Niño-Southern Oscillation (ENSO) climate patterns, with La Niña conditions linked to greater OTEC power availability. Seven areas of opportunity are identified based on their resource potential and proximity to existing electrical distribution lines, including two that could benefit the nearby U.S. Virgin Islands. The greatest OTEC power potential is observed to the south of the main island of Puerto Rico in the Caribbean Sea with an estimated capacity of 138 MW for a plant pumping cold water from a depth of 1,000 m, or the equivalent amount of electricity required to power 219,000 households.

OTEC↗
DOE OSTI2023

A new climatology of South American extratropical cyclogenesis with an intercomparison among ERA5 , JRA55 and the Brazilian Navy

Abstract In South America, the most destructive extratropical cyclones occur over the southeastern quadrant of the continent, a region that includes some of the world's largest population centres. However, there are few studies of cyclogenesis in this region, and little is known about how the varying origins of these storms impact subsequent behaviour. By supplementing an observational record with current reanalysis data, this study reveals the general characteristics of cyclones that develop in the lee regions of the Andes and those that develop nearer the Atlantic coast. The comparative climatologies demonstrate that cyclone development in these separate contexts is driven by topography, local atmospheric circulations and basin‐scale climate oscillations. The analysis further reveals a low‐frequency seesaw of lee and coastal cyclogenesis, with cross‐basin ocean temperature differences playing a teleconnectional role.

Meteorology & Atmospheric Sciences↗
DOE OSTI2022

Modulation of the Eastern Equatorial Pacific Seasonal Cycle by Tropical Instability Waves

Feedbacks from tropical instability waves (TIWs) on the seasonal cycle of the eastern Pacific Ocean are studied using two eddy-rich ocean simulations, with and without TIWs. By warming the equatorial waters by up to 0.4°C through nonlinear advection in boreal summer and fall, TIWs reduce the amplitude of the seasonal cycle in upper ocean temperatures. In addition, TIWs stabilize the upper part of the Equatorial Undercurrent (EUC) through enhanced barotropic energy conversion, leading to a year-round weakening by -0.15 m s -1 and preventing an unrealistic re-intensification in boreal fall usually found in non-eddy resolving models. A coarser simulation at 1-degree horizontal resolution fails to reproduce the TIW-induced nonlinear warming of equatorial waters, but succeeds in inhibiting the EUC re-intensification. This suggests a threshold effect in TIW strength, associated with the model's ability to simulate eddies, which may be responsible for long-standing biases displayed by global climate models in this region.

58 GEOSCIENCES↗
DOE OSTI2025

Reduction of Pacific Double‐ITCZ Bias by Convection Parameterization in NCAR CESM2.2

Abstract The impact of convective closure on the double‐ITCZ bias in the NCAR CESM2.2 is investigated in this study. The standard CESM2.2 simulates a remarkable double‐ITCZ bias in the central and eastern Pacific, especially in boreal winter and spring. Modifications to the closure in convection parameterization scheme greatly reduce the double‐ITCZ bias in all seasons, demonstrating that convection parameterization can substantially influence the double‐ITCZ bias in CESM2.2. Further analyses suggest that convection parameterization can modulate the tropical atmosphere‐ocean feedback processes, through which it influences the SST in the southern ITCZ region and hence the double‐ITCZ bias. The changes in the upper ocean temperature advection induced by modified convective closure plays important roles in reducing the warm SST bias and double‐ITCZ precipitation bias in the southern ITCZ region. The modified convective closure improves the low‐level cloud and shortwave cloud radiative forcing in the southeastern Pacific. However, surface heat flux plays only a limited role in reducing warm SST bias and double ITCZ bias because the impacts of shortwave radiation changes are largely canceled by changes in longwave radiation and latent heat flux.

Song, Xiaoliang [Scripps Institution of Oceanograp↗
DOE OSTI2023

Ecological forecasts for marine resource management during climate extremes

Forecasting weather has become commonplace, but as society faces novel and uncertain environmental conditions there is a critical need to forecast ecology. Forewarning of ecosystem conditions during climate extremes can support proactive decision-making, yet applications of ecological forecasts are still limited. We showcase the capacity for existing marine management tools to transition to a forecasting configuration and provide skilful ecological forecasts up to 12 months in advance. The management tools use ocean temperature anomalies to help mitigate whale entanglements and sea turtle bycatch, and we show that forecasts can forewarn of human-wildlife interactions caused by unprecedented climate extremes. We further show that regionally downscaled forecasts are not a necessity for ecological forecasting and can be less skilful than global forecasts if they have fewer ensemble members. Our results highlight capacity for ecological forecasts to be explored for regions without the infrastructure or capacity to regionally downscale, ultimately helping to improve marine resource management and climate adaptation globally.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Response of the Indian Summer Monsoon to Global Warming, Solar Geoengineering and its Termination

The response of the Indian Summer Monsoon (ISM) to global warming, solar geoengineering and its termination is examined using the multi-model mean of eight global climate model simulations from G2 experiment of the Geoengineering Model Intercomparison Project. Under the global warming scenario, land-ocean temperature contrasts and low-level monsoon circulation progressively strengthen accompanied by enhanced precipitation over the Indian subcontinent. Notably, in the solar geoengineered scenario, marginal surface cooling is projected over the majority of the ISM region, and there is strengthening of both upper and lower level circulation. Upon the termination of the geoengineering, the climatic conditions temperature, precipitation, and winds — would abruptly change to what it would have been under the global warming scenario, and such abrupt change may cause devastating consequences.

Bhowmick, Mansi↗
DOE OSTI2023

CMIP6 skill at predicting interannual to multi-decadal summer monsoon precipitation variability

Monsoons affect the economy, agriculture, and human health of two thirds of the world’s population. Therefore, predicting variations in monsoon precipitation is societally important. We explore the ability of climate models from the sixth phase of the Climate Model Intercomparison Project to predict summer monsoon precipitation variability by using hindcasts from the Decadal Climate Prediction Project (Component A). The multi-model ensemble-mean shows significant skill at predicting summer monsoon precipitation from one year to 6–9 years ahead. However, this skill is dependent on the model, monsoon domain, and lead-time. In general, the skill of the multi-model ensemble-mean prediction is low in year 1 but increases for longer-lead times and is largely consistent with externally forced changes. The best captured region is northern Africa for the 2–5 and 6–9 year forecast lead times. In contrast, there is no significant skill using the ensemble-mean over East and South Asia and, furthermore, there is significant spread in skill among models for these domains. By sub-sampling the ensemble we show that the difference in skill between models is tied to the simulation of the externally forced response over East and South Asia, with models with a more skilful forced response capable of better predictions. A further contribution is from skilful prediction of Pacific Ocean temperatures for the South Asian summer monsoon at longer lead-times. Therefore, these results indicate that predictions of the East and South Asian monsoons could be significantly improved.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Generation of a highly attenuated strain of Pseudomonas aeruginosa for commercial production of alginate

Alginate is an important polysaccharide that is commonly used as a gelling agent in foods, cosmetics and healthcare products. Currently, all alginate used commercially is extracted from brown seaweed. However, with environmental changes such as increasing ocean temperature and the increasing number of biotechnological uses of alginates with specific properties, there is an emerging need for more reliable and customizable sources of alginate. An alternative to seaweed for alginate production is Pseudomonas aeruginosa, a common Gram-negative bacterium that can form alginate containing biofilms. However, P. aeruginosa is an opportunistic pathogen that can cause life-threatening infections in immunocompromised patients. Therefore, we sought to engineer a non-pathogenic P. aeruginosa strain that is safe for commercial production of alginate. Using a homologous recombination strategy, we sequentially deleted five key pathogenicity genes from the P. aeruginosa chromosome, resulting in the marker-free strain PGN5. Intraperitoneal injection of mice with PGN5 resulted in 0% mortality, while injection with wild-type P. aeruginosa resulted in 95% mortality, providing evidence that the systemic virulence of PGN5 is highly attenuated. Importantly, PGN5 produces large amounts of alginate in response to overexpression of MucE, an activator of alginate biosynthesis. The alginate produced by PGN5 is structurally identical to alginate produced by wildtype P. aeruginosa, indicating that the alginate biosynthetic pathway remains functional in this modified strain. The genetic versatility of P. aeruginosa will allow us to further engineer PGN5 to produce alginates with specific chemical compositions and physical properties to meet different industrial and biomedical needs.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2024

Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

Abstract Background Over their evolutionary history, corals have adapted to sea level rise and increasing ocean temperatures, however, it is unclear how quickly they may respond to rapid change. Genome structure and genetic diversity contained within may highlight their adaptive potential. Results We present chromosome-scale genome assemblies and linkage maps of the critically endangered Atlantic acroporids,Acropora palmataandA. cervicornis. Both assemblies and linkage maps were resolved into 14 chromosomes with their gene content and colinearity. Repeats and chromosome arrangements were largely preserved between the species. The family Acroporidae and the genusAcroporaexhibited many phylogenetically significant gene family expansions. Macrosynteny decreased with phylogenetic distance. Nevertheless, scleractinians shared six of the 21 cnidarian ancestral linkage groups as well as numerous fission and fusion events compared to other distantly related cnidarians. Genetic linkage maps were constructed from oneA. palmatafamily and 16A. cervicornisfamilies using a genotyping array. The consensus maps span 1,013.42 cM and 927.36 cM forA. palmataandA. cervicornis, respectively. Both species exhibited high genome-wide recombination rates (3.04 to 3.53 cM/Mb) and pronounced sex-based differences, known as heterochiasmy, with 2 to 2.5X higher recombination rates estimated in the female maps. Conclusions Together, the chromosome-scale assemblies and genetic maps we present here are the first detailed look at the genomic landscapes of the critically endangered Atlantic acroporids. These data sets revealed that adaptive capacity of Atlantic acroporids is not limited by their recombination rates. The sister species maintain macrosynteny with few genes with high sequence divergence that may act as reproductive barriers between them. In the AtlanticAcropora, hybridization between the two sister species yields an F1 hybrid with limited fertility despite the high levels of macrosynteny and gene colinearity of their genomes. Together, these resources now enable genome-wide association studies and discovery of quantitative trait loci, two tools that can aid in the conservation of these species.

Biotechnology & Applied Microbiology↗