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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Microcoleus (Cyanobacteria) form watershed-wide populations without strong gradients in population structure

The relative importance of separation by distance and by environment to population genetic diversity can be conveniently tested in river networks, where these two drivers are often independently distributed over space. To evaluate the importance of dispersal and environmental conditions in shaping microbial population structures, we performed genome-resolved metagenomic analyses of benthic Microcoleus -dominated cyanobacterial mats collected in the Eel and Russian River networks (California, USA). The 64 Microcoleus genomes were clustered into three species that shared >96.5% average nucleotide identity (ANI). Most mats were dominated by one strain, but minor alleles within mats were often shared, even over large spatial distances (>300 km). Within the most common Microcoleus species, the ANI between the dominant strains within mats decreased with increasing spatial separation. However, over shorter spatial distances (tens of kilometres), mats from different subwatersheds had lower ANI than mats from the same subwatershed, suggesting that at shorter spatial distances environmental differences between subwatersheds in factors like canopy cover, conductivity, and mean annual temperature decreases ANI. Since mats in smaller creeks had similar levels of nucleotide diversity (π) as mats in larger downstream subwatersheds, within-mat genetic diversity does not appear to depend on the downstream accumulation of upstream-derived strains. The four-gamete test and sequence length bias suggest recombination occurs between almost all strains within each species, even between populations separated by large distances or living in different habitats. Overall, our results show that, despite some isolation by distance and environmental conditions, sufficient gene-flow occurs among cyanobacterial strains to prevent either driver from producing distinctive population structures across the watershed.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

A Highly Efficient Control Framework for Centralized Residential Charging Coordination of Large Electric Vehicle Populations

The potential for widespread adoption of plug-in electric vehicles (PEVs) brings with it the potential for negative impacts on the electric grid from electric vehicle charging. Uncoordinated PEV charging may increase electricity demand during peak hours, which could create concerns for the grid as the number of PEVs increases. Therefore, it is important to coordinate charging to alleviate potential negative impacts. Centralized charging coordination is preferred by grid operator over distributed control strategies because it can systematically allocate energy across a large population of PEVs and achieve global coordination benefits. However, centralized methods presented in the literature to date require prohibitively expensive computational resources and lack realistic PEV charging models. As a result, they cannot achieve the efficiency and accuracy required to implement charging coordination in the real world. This paper introduces a highly efficient receding horizon control framework that enables dynamic charging coordination for large PEV populations. A two-stage hierarchical optimization routine is proposed that aggregates individual PEV charging flexibility to reduce the computational complexity of the optimization process. The control framework is based on high-fidelity, validated charging system models and charging behavior models derived from a real-world data set of residential charging activities collected from thousands of charging stations over multiple years. Case studies illustrate that the proposed charging control framework is capable of effectively coordinating the charging of millions of PEVs using a standard desktop computer.

30 DIRECT ENERGY CONVERSION↗
DOE OSTI2021

Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions

Abstract Temperate phages are viruses of bacteria that can establish two types of infection: a lysogenic infection in which the virus replicates with the host cell without producing virions, and a lytic infection where the host cell is eventually destroyed, and new virions are released. While both lytic and lysogenic infections are routinely observed in the environment, the ecological and evolutionary processes regulating these viral dynamics are still not well understood, especially for uncultivated virus-host pairs. Here, we characterized the long-term dynamics of uncultivated viruses infecting green sulfur bacteria (GSB) in a model freshwater lake (Trout Bog Lake, TBL). As no GSB virus has been formally described yet, we first used two complementary approaches to identify new GSB viruses from TBL; one in vitro based on flow cytometry cell sorting, the other in silico based on CRISPR spacer sequences. We then took advantage of existing TBL metagenomes covering the 2005–2018 period to examine the interactions between GSB and their viruses across years and seasons. From our data, GSB populations in TBL were constantly associated with at least 2-8 viruses each, including both lytic and temperate phages. The dominant GSB population in particular was consistently associated with two prophages with a nearly 100% infection rate for >10 years. We illustrate with a theoretical model that such an interaction can be stable given a low, but persistent, level of prophage induction in low-diversity host populations. Overall, our data suggest that lytic and lysogenic viruses can readily co-infect the same host population, and that host strain-level diversity might be an important factor controlling virus-host dynamics including lytic/lysogeny switch.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Millimeter-wave Point Sources from the 2500 Square Degree SPT-SZ Survey: Catalog and Population Statistics

In this work, we present a catalog of emissive point sources detected in the SPT-SZ survey, a contiguous 2530- square-degree area surveyed with the South Pole Telescope (SPT) from 2008 - 2011 in three bands centered at 95, 150, and 220GHz. The catalog contains 4845 sources measured at a significance of 4.5σ or greater in at least one band, corresponding to detections above approximately 9.8, 5.8, and 20.4 mJy in 95, 150, and 220 GHz, respectively. Spectral behavior in the SPT bands is used for source classification into two populations based on the underlying physical mechanisms of compact, emissive sources that are bright at millimeter wavelengths: synchrotron radiation from active galactic nuclei and thermal emission from dust. The latter population includes a component of high-redshift sources often referred to as submillimeter galaxies (SMGs). In the relatively bright flux ranges probed by the survey, these sources are expected to be magnified by strong gravitational lensing. The survey also contains sources consistent with protoclusters, groups of dusty galaxies at high redshift undergoing collapse. We cross-match the SPT-SZ catalog with external catalogs at radio, infrared, and X-ray wavelengths and identify available redshift information. The catalog splits into 3980 synchrotron-dominated and 865 dust-dominated sources and we determine a list of 506 SMGs. Ten sources in the catalog are identified as stars. We calculate number counts for the full catalog, and synchrotron and dusty components, using a bootstrap method and compare our measured counts with models. This paper represents the third and final catalog of point sources in the SPT-SZ survey.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2019

The spatial allocation of population: a review of large-scale gridded population data products and their fitness for use

Population data represent an essential component in studies focusing on human–nature interrelationships, disaster risk assessment and environmental health. Several recent efforts have produced global- and continental-extent gridded population data which are becoming increasingly popular among various research communities. However, these data products, which are of very different characteristics and based on different modeling assumptions, have never been systematically reviewed and compared, which may impede their appropriate use. This article fills this gap and presents, compares and discusses a set of large-scale (global and continental) gridded datasets representing population counts or densities. It focuses on data properties, methodological approaches and relative quality aspects that are important to fully understand the characteristics of the data with regard to the intended uses. Written by the data producers and members of the user community, through the lens of the “fitness for use” concept, the aim of this paper is to provide potential data users with the knowledge base needed to make informed decisions about the appropriateness of the data products available in relation to the target application and for critical analysis.

58 GEOSCIENCES↗
DOE OSTI2017

Effects of scale of movement, detection probability, and true population density on common methods of estimating population density

Knowledge of population density is necessary for effective management and conservation of wildlife, yet rarely are estimators compared in their robustness to effects of ecological and observational processes, which can greatly influence accuracy and precision of density estimates. For this study, we simulate biological and observational processes using empirical data to assess effects of animal scale of movement, true population density, and probability of detection on common density estimators. We also apply common data collection and analytical techniques in the field and evaluate their ability to estimate density of a globally widespread species. We find that animal scale of movement had the greatest impact on accuracy of estimators, although all estimators suffered reduced performance when detection probability was low, and we provide recommendations as to when each field and analytical technique is most appropriately employed. The large influence of scale of movement on estimator accuracy emphasizes the importance of effective post-hoc calculation of area sampled or use of methods that implicitly account for spatial variation. In particular, scale of movement impacted estimators substantially, such that area covered and spacing of detectors (e.g. cameras, traps, etc.) must reflect movement characteristics of the focal species to reduce bias in estimates of movement and thus density.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

Excitations Partition into Two Distinct Populations in Bulk Perovskites

Organolead halide perovskites convert optical excitations to charge carriers with remarkable efficiency in optoelectronic devices. Previous research predominantly documents dynamics in perovskite thin films; however, extensive disorder in this platform may obscure the observed carrier dynamics. Here, carrier dynamics in perovskite single-domain single crystals is examined by performing transient absorption spectroscopy in a transmissive geometry. Two distinct sets of carrier populations that coexist at the same radiation fluence, but display different decay dynamics, are observed: one dominated by second-order recombination and the other by third-order recombination. Based on ab initio simulations, this observation is found to be most consistent with the hypothesis that free carriers and localized carriers coexist due to polaron formation. The calculations suggest that polarons will form in both CH3NH3PbBr3 and CH3NH3PbI3 crystals, but that they are more pronounced in CH3NH3PbBr3. Single-crystal CH3NH3PbBr3 could represent the key to understanding the impact of polarons on the transport properties of perovskite optoelectronic devices.

bulk carrier dynamics↗
DOE OSTI2018

Population structure of Miscanthus sacchariflorus reveals two major polyploidization events, tetraploid-mediated unidirectional introgression from diploid M. sinensis, and diversity centred around the Yellow Sea

Abstract Background and Aims Miscanthus, a C4 perennial grass native to East Asia, is a promising biomass crop. Miscanthus sacchariflorus has a broad geographic range, is used to produce paper in China and is one of the parents (along with Miscanthus sinensis) of the important biomass species Miscanthus × giganteus. The largest study of M. sacchariflorus population genetics to date is reported here. Methods Collections included 764 individuals across East Asia. Samples were genotyped with 34 605 single nucleotide polymorphisms (SNPs) derived from restriction site-associated DNA sequencing (RAD-seq) and ten plastid microsatellites, and were subjected to ploidy analysis by flow cytometry. Key Results Six major genetic groups within M. sacchariflorus were identified using SNP data: three diploid groups, comprising Yangtze (M. sacchariflorus ssp. lutarioriparius), N China and Korea/NE China/Russia; and three tetraploid groups, comprising N China/Korea/Russia, S Japan and N Japan. Miscanthus sacchariflorus ssp. lutarioriparius was derived from the N China group, with a substantial bottleneck. Japanese and mainland tetraploids originated from independent polyploidization events. Hybrids between diploid M. sacchariflorus and M. sinensis were identified in Korea, but without introgression into either parent species. In contrast, tetraploid M. sacchariflorus in southern Japan and Korea exhibited substantial hybridization and introgression with local diploid M. sinensis. Conclusions Genetic data indicated that the land now under the Yellow Sea was a centre of diversity for M. sacchariflorus during the last glacial maximum, followed by a series of migrations as the climate became warmer and wetter. Overall, M. sacchariflorus has greater genetic diversity than M. sinensis, suggesting that breeding and selection within M. sacchariflorus will be important for the development of improved M. × giganteus. Ornamental M. sacchariflorus genotypes in Europe and North America represent a very narrow portion of the species’ genetic diversity, and thus do not well represent the species as a whole.

Clark, Lindsay V.↗
DOE OSTI2017

Genetic basis of photosynthetic responses to cold in two locally adapted populations of Arabidopsis thaliana

Local adaptation is common, but the traits and genes involved are often unknown. Physiological responses to cold probably contribute to local adaptation in wide-ranging species, but the genetic basis underlying natural variation in these traits has rarely been studied. Using a recombinant inbred (495 lines) mapping population from locally adapted populations of Arabidopsis thaliana from Sweden and Italy, we grew plants at low temperature and mapped quantitative trait loci (QTLs) for traits related to photosynthesis: maximal quantum efficiency (F v /F m ), rapidly reversible photoprotection (NPQ fast ), and photoinhibition of PSII (NPQ slow ) using high-throughput, whole-plant measures of chlorophyll fluorescence. In response to cold, the Swedish line had greater values for all traits, and for every trait, large effect QTLs contributed to parental differences. We found one major QTL affecting all traits, as well as unique major QTLs for each trait. Six trait QTLs overlapped with previously published locally adaptive QTLs based on fitness measured in the native environments over 3 years. Our results demonstrate that photosynthetic responses to cold can vary dramatically within a species, and may predominantly be caused by a few QTLs of large effect. Some photosynthesis traits and QTLs probably contribute to local adaptation in this system.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Spin-squeezing-induced enhancement of the sensitivity of an atomic clock using coherent population trapping

The coherent population trapping (CPT) effect is used for making compact atomic clocks. There are two types of CPT clocks: the one in which the Raman beams are applied continuously and the one in which two CPT pulses separated by a dark period are applied (Ramsey scheme). It is obvious that the technique of spin squeezing can only be applied to the Ramsey CPT clock to enhance the sensitivity. However, it is not apparent how to adapt to the CPT clock the protocols for the microwave clock using one-axis-twist squeezing (OATS), since the Ramsey CPT clock is not trivially equivalent to the Ramsey microwave clock. In this paper, we show explicitly how to adapt two protocols using OATS, namely, the Schrödinger cat state protocol (SCSP) and the generalization thereof, and the echo squeezing protocol (ESP), to the CPT clock. The ESP magnifies the phase shift by a factor of N / e , while the SCSP magnifies the phase shift by a factor of N / 2 , making it able to achieve a higher sensitivity in the presence of excess noise.

Li, Jinyang↗
DOE OSTI2026

Data for "Genetics of flooding tolerance in an F2 Miscanthus sacchariflorus ssp. lutarioriparius × M. sinensis population"

This dataset contains all data and supplementary materials from "Genetics of flooding tolerance in an F2 Miscanthus sacchariflorus ssp. lutarioriparius × M. sinensis population". 1. The dataset S1 table contains the raw phenotypic data collected during the experiment. 2. The dataset S2 table contains the LSmean values for the 24 traits studied. 3. The dataset S3 table contains the TASSEL GBSv2 map, marker information, and genotype data used for mapping. 4. The dataset S4 table contains information on candidate genes found in each of the QTL intervals. 5. The dataset S5 table contains the GO annotations and KEGG enrichment analyses for those candidate genes. 6. The dataset S6 table contains information on the sequences used to classify AP2 ERF transcription factors. 7. The dataset S7 table contains information on AP2 ERF orthologs between Miscanthus and rice based on synteny. 8. Supplementary file 1 contains the ANOVA results using the raw phenotypic data collected from protocol "A". 9. Supplementary file 2 contains the ANOVA results using the raw phenotypic data collected from protocol "B". 10. Supplementary file 3 contains notes on the comparison of SNP calling methods. 11. Supplementary file 4 is a script for analyzing candidate genes found in QTL intervals.

Miscanthus, flood, partial submergence, complete s↗
DOE OSTI2019

Population Genetics of Invasive Brown Tree Snakes ( Boiga irregularis ) on Guam, USA

The introduction of Brown Tree Snakes (BTS; Boiga irregularis) on Guam has had devastating impacts on native wildlife and human infrastructure, resulting in concerted efforts to control populations and prevent the spread of this invasive species to other islands. These control efforts, particularly aerial drops of acetaminophen, can eradicate BTS within target areas, but snakes can repopulate those areas via compensatory immigration. Therefore, understanding how gene flow corresponds to dispersal can add critical information for maximizing effectiveness of control efforts. To examine dispersal patterns of BTS on Guam from a genetics perspective, we genotyped 332 individual snakes at 22 microsatellite loci to test for the presence of physical barriers (e.g., roads) and spatial genetic structure associated with restricted dispersal. Brown Tree Snakes experience sufficient gene flow on Guam to resist any strong physical barriers, a likely interaction between their large population size and ability to cross physical obstacles such as roads. In addition, BTS exhibited isolation-by-distance across the entire study area, but those captured on Andersen Air Force Base in northern Guam appeared to disperse randomly regardless of sex. Overall, BTS experience high gene flow across Guam, particularly in less urbanized areas in northern Guam. Therefore, compensatory immigration will likely make complete eradication difficult without antisnake barriers.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

Population Distribution within a 50-mile Radius of SRS based on the 2010 U.S. Census Population

A database of the population within 50 miles of the Savannah River Site (SRS) is needed to estimate radiation doses to a collective group of individuals. The offsite population data was last updated with the 2000 census data (Simpkins 2002; Koffman 2001) and has been once again updated with the 2010 census data. The data acquisition process for the 2010 census data was the same as for the 2000 census data. Koffman (2001) provides complete details of the process and is provided in Appendix A.

61 RADIATION PROTECTION AND DOSIMETRY↗