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Hybrid learning techniques for scientific data reduction with performance guarantees

The research initiatives supported by the U.S. Department of Energy (DOE) Grant DE-SC0022265 are fundamentally aimed at pioneering advanced machine learning (ML) techniques for scientific data compression within high-performance computing (HPC) environments. This comprehensive body of work addresses the critical challenge posed by the exponential growth of data generated by scientific simulations in domains such as fusion energy, climate modeling, and computational fluid dynamics (CFD). A core objective is to develop compression algorithms that achieve substantial data reduction—often by orders of magnitude—while rigorously ensuring the fidelity of both the primary data (PD) and scientifically crucial derived quantities of interest (QoI). The methodologies deployed under this grant integrate sophisticated deep learning architectures, prominently featuring autoencoders, advanced generative models like conditional diffusion, and hybrid learning techniques. Key innovations include the development of Guaranteed Autoencoders (GAE) and the Guaranteed Conditional Diffusion with Tensor Correction (GCDTC) framework, which provide explicit, instance-level error bounds on reconstructed data. Furthermore, specialized strategies such as nonlinear constraint satisfaction are employed to preserve the integrity of QoI, a vital requirement for the trustworthiness of downstream scientific analyses. This research also focuses on the design and implementation of scalable, GPU-accelerated software pipelines that seamlessly integrate into existing HPC workflows, ensuring both computational efficiency and practical applicability. The CAESAR framework, for example, unifies foundation and generative models to create an adaptive and efficient compression solution for spatio-temporal scientific data. Collectively, these efforts represent a significant advancement in mitigating the scientific data deluge, enabling more effective data management, accelerated scientific discovery, and optimized utilization of HPC resources.

97 MATHEMATICS AND COMPUTING

HPDR: High-Performance Portable Scientific Data Reduction Framework

The rapid growth in scientific data generation is outpacing advancements in computing systems necessary for efficient storage, transfer, and analysis, particularly in the context of exascale computing. With the deployment of first-generation exascale computing systems and next-generation experimental facilities, this gap is widening and necessitates effective data reduction techniques to manage enormous data volumes. Over the past decade, various data reduction methods, including lossless compression, error-controlled lossy compression, and data refactoring, have been developed to accelerate I/O in scientific workflows. Despite significant reductions in data volume, these methods introduce considerable computational overhead, which can become the new bottleneck in data processing. To mitigate this, GPU-accelerated data reduction algorithms have been introduced. However, challenges remain in their integration into exascale workflows, including limited portability across different GPU architectures, substantial memory transfer overhead, and reduced scalability on dense multi-GPU systems. To address these challenges, we propose HPDR, a high-performance and portable data reduction framework. HPDR is designed to enable the execution of state-of-the-art reduction algorithms across diverse processor architectures while reducing memory transfer overhead to 2.3 % of the original, resulting in up to 3.5× faster throughput compared to existing solutions. It also achieves up to 96% of the theoretical speedup in multi-GPU settings. In addition, evaluations on accelerating I/O operations at scale up to 1,024 nodes of the Frontier supercomputer demonstrate that HPDR can achieve up to 103 TB/s reduction throughput, providing up to 4× acceleration in parallel I/O performance compared to existing data reduction routines. This work highlights the potential of HPDR to significantly enhance data reduction efficiency in exascale computing environments.

Chen, Jieyang [University of Oregon]

Scientific data visualization software - Trends and directions

Scientific data visualization has finally come of age as an important and accepted discipline. While scientists have been using computer graphics to visualize experimental data and computational results for at least 30 years, recent improvements in cost/performance of graphics workstations, more readily available software, and a new-found identity based on the report "Visualization in Scientific Computing" (McCormick, DeFanti, and Brown, 1987) have solidified the discipline. The thesis here is that scientists are forced to work too hard to create these visualizations, but that the evolving set of visualization tools can greatly reduce the requisite effort. The architecture of a new class of software can lead to a more widespread availability of interactive visualization tools, which can make the process of creating a visualization as simple as doing interactive chart and graph layout.

Foley, James D.

A Lightweight I/O Scheme to Facilitate Spatial and Temporal Queries of Scientific Data Analytics

In the era of petascale computing, more scientific applications are being deployed on leadership scale computing platforms to enhance the scientific productivity. Many I/O techniques have been designed to address the growing I/O bottleneck on large-scale systems by handling massive scientific data in a holistic manner. While such techniques have been leveraged in a wide range of applications, they have not been shown as adequate for many mission critical applications, particularly in data post-processing stage. One of the examples is that some scientific applications generate datasets composed of a vast amount of small data elements that are organized along many spatial and temporal dimensions but require sophisticated data analytics on one or more dimensions. Including such dimensional knowledge into data organization can be beneficial to the efficiency of data post-processing, which is often missing from exiting I/O techniques. In this study, we propose a novel I/O scheme named STAR (Spatial and Temporal AggRegation) to enable high performance data queries for scientific analytics. STAR is able to dive into the massive data, identify the spatial and temporal relationships among data variables, and accordingly organize them into an optimized multi-dimensional data structure before storing to the storage. This technique not only facilitates the common access patterns of data analytics, but also further reduces the application turnaround time. In particular, STAR is able to enable efficient data queries along the time dimension, a practice common in scientific analytics but not yet supported by existing I/O techniques. In our case study with a critical climate modeling application GEOS-5, the experimental results on Jaguar supercomputer demonstrate an improvement up to 73 times for the read performance compared to the original I/O method.

Temporal Queries

Eureka: Enabling Fine-Grained Access and Range Queries on Compressed Scientific Data via Data-Index Co-Compression

Handling large-scale scientific data in high-performance computing (HPC) environments poses significant challenges, including excessive I/O, high storage costs, and slow query performance. Traditional approaches often require full data decompression and scans, making them impractical for real-time or interactive analysis. To address these limitations, we introduce Eureka, a unified data-index co-compression framework that enables fine-grained access and efficient range queries on compressed scientific datasets. Eureka integrates spatial domain decomposition with block-wise error-bounded lossy compression to support selective decompression. It constructs a hierarchical AVL-tree index during compression to capture block-level value ranges, enabling fast pruning during query execution. To reduce metadata overhead, the index itself is also compressed while ensuring recall-preserving results. Experiments on six diverse HPC simulation datasets show that Eureka achieves up to 25x data compression and over 300x index compression, surpassing state-of-the-art compressors such as SZ3 and ZFP in rate-distortion performance. Additionally, Eureka delivers over 30x speedup for low-selectivity range queries, making it a scalable and efficient solution for modern scientific data analysis.

Yan, Ning

Scientific Data Management Beyond Traditional Computing Boundaries

Scientific data management is undergoing a fundamental transformation driven by the convergence of artificial intelligence (AI)/machine learning workflows, distributed computing and storage environments, and exponential data growth. Here, we analyze how these developments address current limitations while enabling new capabilities for cross-facility collaboration and AI-driven research.

Widener, Patrick [Oak Ridge National Laboratory (O

Scientific Data Purchase Project Overview Presentation

The Scientific Data Purchase (SDP) project acquires science data from commercial sources. It is a demonstration project to test a new way of doing business, tap new sources of data, support Earth science research, and support the commercial remote sensing industry. Phase I of the project reviews simulated/prototypical data sets from 10 companies. Phase II of the project is a 3 year purchase/distribution of select data from 5 companies. The status of several SDP projects is reviewed in this viewgraph presentation, as is the SDP process of tasking, verification, validation, and data archiving. The presentation also lists SDP results for turnaround time, metrics, customers, data use, science research, applications research, and user feedback.

Holekamp, Kara

Automated Downlink Pipeline for Scientific Data Using TReK

ISS users generate scientific data files on orbit that require console operators to retrieve and deliver them for analysis. Automating the downlink process using TReK CFDP and DTN provides ground flight controllers and PD teams increased efficiency, reducing workload and resulting in cost savings without reduced services provided.

TReK

Kernelized approaches to streaming compression of scientific data

In this paper three algorithms are developed for the streaming compression of scientific data. The algorithms presented are reliant on the theory of vector-valued reproducing kernel Hilbert spaces and operator valued kernel. Further, the scientific data is modeled as a snapshot of time dependent vector field F(x, t) over a manifold M and the recovery of the data is framed as a learning problem. These processes are then appropriately modified and ana lyzed for the streaming scenario in which data is generated without the ability to revisit past entries.

97 MATHEMATICS AND COMPUTING

Scientific Data Compression for Large Scale Computational Fluid Dynamics (CFD) Simulations

This Cooperative Research and Development Agreement (CRADA) between Oak Ridge National Laboratory (ORNL) and General Electric (GE) investigated methods for reducing the size of large computational fluid dynamics (CFD) simulation datasets using scientific data compression techniques. The work focused on adapting the MultiGrid Adaptive Reduction of Data (MGARD) compression framework and integrating it with high-performance I/O and visualization tools used in CFD workflows. MGARD uses hierarchical multilevel decomposition to enable error-controlled compression of floating-point scientific data while preserving quantities of interest. During the project, MGARD compression was integrated with the ADIOS I/O framework and visualization tools such as ParaView to enable efficient storage, transfer, and analysis of simulation data. The collaboration also explored approaches for improving compression performance for CFD data defined on unstructured meshes. Results demonstrate that scientific data compression can significantly reduce storage requirements and improve data management for large-scale CFD simulations.

97 MATHEMATICS AND COMPUTING

Modern Scientific Data Governance Framework

Science has entered the era of Big Data with new challenges related to data governance, stewardship, and management. The existing data governance practices must catch up to ensure proper data management. Existing data governance policies and stewardship best practices tend to be disconnected from operational data management practices and enforcement and mainly exist in well-meaning documents or reports. These governance policies are, at best, partially implemented and rarely monitored or audited. In addition, existing governance policies keep adding additional data management steps that require a human, ‘a data steward’, in the loop, and the cost of data management can no longer scale proportionately with the current and future increased data volume and complexity. The goal for developing an updated data governance framework is to modernize scientific data governance to the reality of Big data and align it with the current technology trends such as cloud computing and AI. The goals of this framework are two folds. One is to ensure thoroughness that the governance adequately covers the entire data life cycle. Two, provide a practical approach that offers a consistent and repeatable process for different projects. Three core principles ground this framework. First, focus on just enough governance and prevent data governance from becoming a roadblock toward the scientific process. Remove any unnecessary processes and steps. Second, automate data management steps where possible. Actively remove steps that require ‘human in the loop’ within the management process to be efficient and scale with increasing data. Third, all the processes should continually be optimized using quantified metrics to streamline the monitoring and auditing workflows.

Rahul Ramachandran

Top Research Challenges and Opportunities for Near Real-Time Extreme-Scale Visualization of Scientific Data

The rapid advancement in scientific simulations and experimental facilities has resulted in the generation of vast amounts of data at unprecedented scales. The analysis and visualization of large amounts of data is a challenge in and of itself, but the requirements for timeliness significantly magnify these difficulties. Near real-time visualization is critical to monitor and analyze the data produced by these large facilities, but current production tools are not well-suited to these requirements. In this position paper, we share our perspective on some of the challenges, and thus, opportunities for research that stand in the way of near-real-time visualization of large scientific data.

Pugmire, Dave

Error-controlled Progressive Retrieval of Scientific Data under Derivable Quantities of Interest

The unprecedented amount of scientific data has introduced heavy pressure on the current data storage and transmission systems. Progressive compression has been proposed to mitigate this problem, which offers data access with on-demand precision. However, existing approaches only consider precision control on primary data, leaving uncertainties on the quantities of interest (QoIs) derived from it. In this work, we present a progressive data retrieval framework with guaranteed error control on derivable QoIs. Our contributions are three-fold. (1) We carefully derive the theories to strictly control QoI errors during progressive retrieval. Our theory is generic and can be applied to any QoIs that can be composited by the basis of derivable QoIs proved in the paper. (2) We design and develop a generic progressive retrieval framework based on the proposed theories, and optimize it by exploring feasible progressive representations. (3) We evaluate our framework using five real-world datasets with a diverse set of QoIs. Experiments demonstrate that our framework can faithfully respect any user-specified QoI error bounds in the evaluated applications. This leads to over 2.02× performance gain in data transfer tasks compared to transferring the primary data while guaranteeing a QoI error that is less than 1E-5.

Wu, Xuan

A Framework for Compressing Unstructured Scientific Data via Serialization

We present a general framework for compressing unstructured scientific data with known local connectivity. A common application is simulation data defined on arbitrary finite element meshes. The framework employs a greedy topology preserving reordering of original nodes which allows for seamless integration into existing data processing pipelines. This reordering process depends solely on mesh connectivity and can be performed offline for optimal efficiency. However, the algorithm’s greedy nature also supports on-the-fly implementation. The proposed method is compatible with any compression algorithm that leverages spatial correlations within the data. The effectiveness of this approach is demonstrated on a large-scale real dataset using several compression methods, including MGARD, SZ, and ZFP.

Reshniak, Viktor [ORNL] (ORCID:0000000315454462)

MR-CDF: Managing multi-resolution scientific data

MR-CDF is a system for managing multi-resolution scientific data sets. It is an extension of the popular CDF (Common Data Format) system. MR-CDF provides a simple functional interface to client programs for storage and retrieval of data. Data is stored so that low resolution versions of the data can be provided quickly. Higher resolutions are also available, but not as quickly. By managing data with MR-CDF, an application can be relieved of the low-level details of data management, and can easily trade data resolution for improved access time.

Salem, Kenneth

Investigating the Future of Scientific Data Search [Slides]

Searching for usable, actionable, data in a trustworthy manner is a challenge across scientific communities. Artificial Intelligence (AI) and Machine Learning (ML) techniques may be leveraged to increase the utility of scientific data by: Demystify unstructured data to aid curation & sharing Surfacing hard to find datasets. User Experience (UX) Research can help uncover scientists needs & challenges finding data and using AI/ML enabled tools.

97 MATHEMATICS AND COMPUTING