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At least 37 records · Page 2

Cell-Type-Specific Proteomics Analysis of a Small Number of Plant Cells by Integrating Laser Capture Microdissection with a Nanodroplet Sample Processing Platform

Plant organs and tissues contain multiple cell types, which are well organized in 3-dimensional structure to efficiently perform physiological functions such as homeostasis, response to environmental perturbation, pathogen infection. It is critically important to perform molecular measurements at the cell-type-specific level to discover mechanisms and unique features of cell populations that govern differentiation and respond to external perturbations. Although mass spectrometry-based proteomics has been demonstrated as an enabling discovery tool to study plant physiology, conventional approaches require millions of cells to generate robust biological conclusions. Such requirements mask the cell-to-cell heterogeneities and limit the comprehensive profiling of plant proteins at spatially resolved and cell-type-specific resolutions. This protocol describes a recently-developed proteomics workflow for studying a small number of plant cells by integrating laser capture microdissection, microfluidic nanodroplet-based sample preparation, with ultrasensitive liquid chromatography-mass spectrometry. Using poplar as a model tree species, we provide detailed protocols, including plant tissue harvest, tissue preparation, cryosectioning, laser microdissection, protein digestion, mass spectrometry measurement, and data analysis. We show the workflow enables the precise identification and quantification of thousands of proteins from hundreds of isolated plant root and leaf cells.

59 BASIC BIOLOGICAL SCIENCES↗

Carbon starvation is absent regardless of season of burn in Liquidambar styraciflua L.

In the Southeastern United States, the function and stability of pine ecosystems depends on frequent low intensity fires. One of the critical effects of frequent fire is the inhibition of hardwood competition by removing above-ground stems (top-kill). Previous long-term studies have correlated early growing season burns with higher understory mortality when compared to dormant season burns. Seasonal differences in mortality from insufficient carbon reserves in roots after leaf flush were posited as the mechanism but this was never explicitly tested. In this experiment, we burned two-year-old pot-grown sweetgums (Liquidambar styraciflua L.) in the dormant season (February), growing season (May), and compared their physiological responses to plants that were unburned. By the end of the first post-burn growing season, mortality was higher after the dormant season burn than the growing season burn and unburned trees had nearly twice the mass of either the burned treatments. Tissue starch concentrations were similar across all treatments highlighting the resiliency of sweetgum carbon stocks to recover from above-ground stem removal regardless of season. We showed the critical importance of top-killing stems regardless of season of burn. Our findings further suggest that dormant season fires can be more lethal to young sweetgum, possibly due to susceptibility of tender new shoots to freezing damage.

54 ENVIRONMENTAL SCIENCES↗

AmeriFlux FLUXNET-1F US-Lin Lindcove Orange Orchard

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Lin Lindcove Orange Orchard. This is the FLUXNET version of the carbon flux data for the site US-Lin Lindcove Orange Orchard produced by applying the standard ONEFlux (1F) software. Site Description - The experimental site was a citrus orchard about three km west of the UC Lindcove Research and Experiment Station. The site is characterized by a Mediterranean climate typical of Central California, with warm dry summers and cool wet winters. The soil texture for the upper horizon (0-33 cm) was loam with a particle size distribution of 42% sand, 38% silt, and 20% clay (Kearney Ag Center). Soil pH was 7.4 (Valley Tech Soil Agricultural Laboratory Services). The orchard was drip-irrigated with water applied twice per week in the warm season to ensure water avail- ability close to field capacity. The site was kept clean from understory vegetation and mechanical pruning operations took place twice a year to limit the size ofthe orange trees for harvesting and site maintenance. The block of trees in which the tower and instruments were located was ‘Valencia’ orange on trifoliate rootstock, with a planting date in the 1960’s. The square 4 ha block had dimensions of 200 m NeS and EeW. At the end of the study, we harvested a ‘Valencia’ citrus tree from within the study block to measure citrus leaf area index (LAI) and biomass density. The tree height was 3.7 m as measured with a telescoping pole. We measured canopy radii in the four cardinal directions to calculate a planar area (as seen from above) of 12.2 m2. The mean specific leaf area (SLA) of citrus leaves was 85.4 cm2 g-1 obtained by measuring leaf area of five groups of leaf samples with a LiCor Leaf area meter (mod. LI-3100C) followed by drying and weighing. LAI for the orchard was 3.00, derived using the SLA value and the total dry mass of leaves from the harvested tree, multiplied by the plant population of 237 plants per ha as obtained from spacing measurements and Google Maps imagery.

Fares, Silvano↗

Distinctive signals of frustrated dark matter

We study a renormalizable model of Dirac fermion dark matter (DM) that communicates with the Standard Model (SM) through a pair of mediators — one scalar, one fermion — in the representation (6, 1, $\frac{4}{3}$) of the SM gauge group SU(3) c x SU(2) L x U(1) Y . While such assignments preclude direct coupling of the dark matter to the Standard Model at tree level, we examine the many effective operators generated at one-loop order when the mediators are heavy, and find that they are often phenomenologically relevant. We reinterpret dijet and pair-produced resonance and jets + E$^{miss}_{T}$ searches at the Large Hadron Collider (LHC) in order to constrain the mediator sector, and we examine an array of DM constraints ranging from the observed relic density Ω χ h$^{2}_{Planck}$ to indirect and direct searches for dark matter. Tree-level annihilation, available for DM masses starting at the TeV scale, is required in order to produce Ω χ h$^{2}_{Planck}$ through freeze-out, but loops — led by the dimension-five DM magnetic dipole moment — are nonetheless able to produce signals large enough to be constrained, particularly by the XENON1T experiment. In some benchmarks, we find a fair amount of parameter space left open by experiment and compatible with freeze-out. In other scenarios, however, the open space is quite small, suggesting a need for further model-building and/or non-standard cosmologies.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

A Right-handed neutrino portal to the hidden sector: active neutrinos and their twins in an F-theory model

We analyze the neutrino phenomenology in an SU(5) F-theory model with both a visible sector and a twin hidden sector. At low energies, the strong and weak scales of the two sectors may differ but the spectrum of states is described by the MSSM (MSSM') in the visible (twin) sectors. What is special about the model is that there are right-handed neutrinos which couple to both sectors via Yukawa couplings. As a result, assuming 3 right-handed neutrinos with a large mass much greater than the weak scale, at tree-level the seesaw mechanism results in 3 massive Majorana neutrinos and 3 massless ones. The massless neutrinos acquire mass via radiative corrections. In our analysis, the massless neutrinos are predominantly active neutrinos, while the massive neutrinos are predominantly sterile neutrinos. We fit the active neutrino masses and mixing angles and discuss the phenomenology of the lightest sterile neutrino. Finally we consider some possible scenarios for cosmology.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Towards determination of the strong coupling $α_s(m_Z)$ from four-flavor lattice QCD using the continuous $β$-function method

The precise value of the strong coupling $α_s(m_{Z})$ at the $Z$-boson mass $m_{Z}$ is essential for high-energy phenomenology and precision tests of quantum chromodynamics (QCD). We present the status of a program targeting a $\sim 0.3\%$ determination of $α_s(m_{Z})$ using the renormalization group $β$-function in the infinite volume gradient flow scheme based on lattice QCD simulations of degenerate four-flavor highly improved staggered quark (HISQ) ensembles. In particular, we analyze both tree-level cutoff effects and finite-mass effects. We also outline the next steps of the analysis, including the infinite-volume and continuum extrapolations required for a precise determination of $α_s(m_Z)$.

Mandlecha, Yash (ORCID:000000020587962X)↗

Towards determination of the strong coupling $α_s(m_Z)$ from four-flavor lattice QCD using the continuous $β$-function method

The precise value of the strong coupling $α_s(m_{Z})$ at the $Z$-boson mass $m_{Z}$ is essential for high-energy phenomenology and precision tests of quantum chromodynamics (QCD). We present the status of a program targeting a $\sim 0.3\%$ determination of $α_s(m_{Z})$ using the renormalization group $β$-function in the infinite volume gradient flow scheme based on lattice QCD simulations of degenerate four-flavor highly improved staggered quark (HISQ) ensembles. In particular, we analyze both tree-level cutoff effects and finite-mass effects. We also outline the next steps of the analysis, including the infinite-volume and continuum extrapolations required for a precise determination of $α_s(m_Z)$.

Mandlecha, Yash [Michigan State U.; Michigan State↗

Octet scalars shaping LHC distributions in 4-jet final states

We study properties of a hypothetical scalar particle, Θ, which is a color octet and an electroweak singlet. At hadron colliders, Θ is pair produced through its QCD coupling to gluons, so that its mass determines the cross section. It decays at tree level into $q\bar{q}$ through dimension-5 operators, and at one loop into gluons. Thus, the main LHC signature of Θ is a pair of dijets of equal invariant mass. The CMS search in this channel shows a 3.6σ excess over the QCD background for a dijet mass M jj ≈ 0.95 TeV, which can be due to Θ : its production cross section (65 fb for a real scalar) and the acceptance of the CMS event selection applied to pp → ΘΘ → ($q\bar{q}$) ($q\bar{q}$) yield a rate consistent with the excess. Furthermore, the shape of the dσ/dM jj signal is in agreement with the CMS result. Given the data-driven background fit performed by CMS, we find that a complex scalar (whose production rate is twice as large) fits better the data than a real scalar. Besides the pair of dijets, testable LHC signals include a trijet-dijet topology, a $t\bar{t}$ pair plus a dijet resonance, as well as final states involving a Higgs, W or Z boson plus jets.

Dobrescu, Bogdan A. [Fermi National Accelerator La↗

symfind : Addressing the Fragility of Subhalo Finders and Revealing the Durability of Subhalos

Abstract A major question in ΛCDM is what this theory actually predicts for the properties of subhalo populations. Subhalos are difficult to accurately simulate and to find within simulations, and this propagates into uncertainty in theoretical predictions for satellite galaxies. We present Symfind , a new particle-tracking-based subhalo finder, and demonstrate that it can track subhalos to orders-of-magnitude lower masses than commonly used halo-finding tools, with a focus on Rockstar and consistent-trees . These longer survival times mean that at a fixed peak subhalo mass, we find ≈ 15%–40% more subhalos within the virial radius, R vir , and ≈35%–120% more subhalos within R vir /4 in the Symphony dark-matter-only simulation suite. More subhalos are found as the resolution is increased, in contrast to the Rockstar halo finder, which appears to be converged at smaller subhalo counts. We perform extensive numerical testing. In agreement with idealized simulations, we show that the v max , the maximum circular velocity, is systematically biased low until high resolutions ( n peak ≳ 3 × 10 4 ) are achieved, but that mass loss itself can be resolved at much more modest resolutions ( n peak ≳ 4 × 10 3 ). We show that Rockstar converges to false solutions for the mass function, radial distribution, and disruption masses of subhalos. We argue that our new method can trace resolved subhalos until the point of typical galaxy disruption without invoking post hoc orphan modeling. We outline a concrete set of steps for determining whether other subhalo finders meet the same criteria. We publicly release Symfind catalogs and particle data for the Symphony simulation suite at http://web.stanford.edu/group/gfc/symphony .

79 ASTRONOMY AND ASTROPHYSICS↗

Double-copy towards supergravity inflation with α-attractor models

A bstract Key to the simplicity of supergravity α -attractor models of inflation are Volkov-Akulov fermions, often in the form of nilpotent superfields. Here we explore the possibility of using the double-copy to construct theories of Dirac-Born-Infeld-Volkov-Akulov (DBIVA) coupled to supergravity. A color-dual bootstrap admits scattering amplitudes involving pions and vectors through five-point tree-level order by order in mass-dimension, but requires the introduction of a Tr( F 3 ) operator. Gauge theories with this operator were recently found to require a tower of higher-derivative operators to be compatible with the duality between color and kinematics. Adjoint-type double-copy construction at its most conservative seems to require the UV completion of DBIVA + pure Poincaré supergravity scattering amplitudes to a family of theories involving DBIVA-like particles coupled to Weyl-Einstein supergravity. We also point out an alternative solution to color-dual gauged pions that allows adjoint double-copy without a tower of higher derivative corrections but at the cost of exchange symmetry between scalars.

Physics↗

Soft pattern of gravitational Rutherford scattering from heavy target mass expansion

We investigate the soft behavior of the tree-level Rutherford scattering processes mediated via $t$-channel one-graviton exchange. We consider two types of Rutherford scattering processes, {\it e.g.}, a low-energy massless structureless projectile (up to spin-$1$) hits a static massive composite particle carrying various spins (up to spin-$2$), and a slowly-moving light projectile hits a heavy static composite target. The unpolarized cross sections in the first type are found to exhibit universal forms at the first two orders in $1/M$ expansion, yet differ at the next-to-next-to-leading order, though some terms at this order still remain universal or depend on the target spin in a definite manner. The unpolarized cross sections in the second type are universal at the lowest order in projectile velocity expansion and through all orders in $1/M$, independent of the spins of both projectile and target. The universality partially breaks down at relative order-$v^2/M^2$, albeit some terms at this order still depend on the target spin in a specific manner.

Rutherford scattering↗

RG-stable parameter relations of a scalar field theory in absence of a symmetry

Abstract The stability of tree-level relations among the parameters of a quantum field theory with respect to renormalization group (RG) running is typically explained by the existence of a symmetry. We examine a toy model of a quantum field theory of two real scalars in which a tree-level relation among the squared-mass parameters of the scalar potential appears to be RG-stable without the presence of an appropriate underlying symmetry. The stability of this relation with respect to renormalization group running can be explained by complexifying the original scalar field theory. It is then possible to exhibit a symmetry that guarantees the relations of relevant beta functions of squared-mass parameters of the complexified theory. Among these relations, we can identify equations that are algebraically identical to the corresponding equations that guarantee the stability of the relations among the squared-mass parameters of the original real scalar field theory where the symmetry of the complexified theory is no longer present.

Haber, Howard E. (ORCID:0000000173388104)↗

The CluMPR galaxy cluster-finding algorithm and DESI legacy survey galaxy cluster catalogue

ABSTRACT Galaxy clusters enable unique opportunities to study cosmology, dark matter, galaxy evolution, and strongly lensed transients. We here present a new cluster-finding algorithm, CluMPR (Clusters from Masses and Photometric Redshifts), that exploits photometric redshifts (photo-z’s) as well as photometric stellar mass measurements. CluMPR uses a 2D binary search tree to search for overdensities of massive galaxies with similar redshifts on the sky and then probabilistically assigns cluster membership by accounting for photo-z uncertainties. We leverage the deep DESI Legacy Survey grzW1W2 imaging over one-third of the sky to create a catalogue of $\sim 300\, 000$ galaxy cluster candidates out to z = 1, including tabulations of member galaxies and estimates of each cluster’s total stellar mass. Compared to other methods, CluMPR is particularly effective at identifying clusters at the high end of the redshift range considered (z = 0.75–1), with minimal contamination from low-mass groups. These characteristics make it ideal for identifying strongly lensed high-redshift supernovae and quasars that are powerful probes of cosmology, dark matter, and stellar astrophysics. As an example application of this cluster catalogue, we present a catalogue of candidate wide-angle strongly lensed quasars in Appendix C. The nine best candidates identified from this sample include two known lensed quasar systems and a possible changing-look lensed QSO with SDSS spectroscopy. All code and catalogues produced in this work are publicly available (see Data Availability).

79 ASTRONOMY AND ASTROPHYSICS↗

The deconstruction of flavor in the privately democratic Higgs sector

The Standard Model (SM) of particle physics fails to explain the observed hierarchy in fermion masses or the origin of fermion-flavor structure. We construct a model to explain these observations in the quark sector. We introduce a spectrum of new particles consisting of six of each — massive singlet vector-like quarks (VLQs), singlet scalars, and SU(2)-doublet scalars. SM quark masses are generated when the neutral components of the SU(2)-doublet scalars acquire non-zero vacuum expectation values (VEVs). We impose global symmetries to ensure that Yukawa couplings stay roughly flavor diagonal and democratic (of the same order), as well as to suppress tree-level flavor-changing neutral currents. Quark-mass hierarchy then follows from a hierarchy in scalar VEVs. The singlet scalars also acquire weak-scale VEVs. Together with the VLQs, they act as messengers between different generations of quarks in the SM. These messenger particles are responsible for generating the elements of the Cabibbo-Kobayashi-Masakawa (CKM) matrix which depend on the ratios of the singlet VEVs and VLQ masses. Constructed this way, the CKM matrix is found to be independent of the SM fermion masses. Using the measured values of the CKM matrix elements and assuming order-one couplings, we derive constraints on the masses of the VLQs and discuss prospects for probing our model in the near future.

CKM Parameters↗

FEED Study of Carbon Capture Inc. DAC and CarbonCure Utilization Using United States Steel's Gary Works Waste Plant

Direct Air Capture (DAC) has been proposed as a means of reducing atmospheric concentrations of CO2. While DAC has been evaluated through lab-scale, bench-scale, and small-scale pilot units, large-scale deployment has not been achieved. Feasibility studies are one tool to understand the potential design, operation, performance, and impact of commercial-scale DAC. This paper presents the results of a feasibility study for a passive DAC system deployed at >100,000 tpy scale in three different regions across the U.S. and awarded to Carbon Collect by the U.S. Department of Energy National Energy Technology Laboratory (DOE NETL). The MechanicalTree™technology has been designed and engineered by Carbon Collect based on the concept initially developed at Arizona State University Center for Negative Carbon Emissions. It uses a tower of stacked, sorbentcontaining disks supported by a lifting mechanism, exposed to the air to capture CO2 during the adsorption phase. The disks are then lowered into a regeneration chamber for vacuum and steam regeneration to produce CO2 product during the desorption step. The modular tree design allows large installations with repeatable, mass-manufactured units connected to common utilities such as steam supply, vacuum, and CO2 processing for compression and geologic storage. The passive DAC system eliminates the equipment and energy of forced air fans by using natural air circulation to contact the sorbent with the CO2 in the air. Because of this, the performance is dependent on the wind speed in addition to the temperature and relative humidity. Performance and flow rate fluctuations were incorporated into equipment and facility design with considerations for turndown to 10% of maximum rated flow to allow operation in all seasons. The feasibility study was undertaken to evaluate the technology in different regions and climates. Three locations were selected for this study representing different climates: Alabama (hot and humid), California (hot and arid), and Wyoming (continental). For each region, the adsorption/desorption cycle was optimized including tuning the heat integration and cycle timings. The performance of individual trees was then scaled to the full facility with the same design of more than 20,000 trees common between all regions. The installations had expected average CO2 capture rates of between 330,000 and 485,000 tonnes of CO2 per year depending on the climate. The initial engineering design for the facility at each location was performed with cost and performance estimates for the trees, carbon purification and compression, and the balance of plant. To supply thermal and electrical energy for the facility, carbon-free or low-carbon power must be considered. Options for low-carbon, continuous thermal and electrical energy were considered. The best-performing option from those considered was identified to be an electrically-heated molten salt energy storage system, powered by an on-site photovoltaic field. During molten salt thermal discharge, steam is produced from heat exchange with the molten salt and used to generate power in a steam turbine as well as steam for regenerating the DAC carbon trees. The thermal and electrical supply and analysis is presented in the context of low-carbon power for carbon removal. Modelling and economics of transportation and geologic storage of the CO2 is considered and presented for each location. The results of the feasibility study are incorporated into the presented techno-economic and life-cycle assessments. This work is intended to provide an understanding of the performance, cost, and impact of capturing CO2 at the commercial scale and the impact of climate and regional siting on the considered passive DAC system.

42 ENGINEERING↗

Third moments of nucleon unpolarized, polarized, and transversity parton distribution functions from physical-point lattice QCD

Using forward matrix elements of local leading-twist operators, we present a determination of the isovector third Mellin moments ⟨𝑥 2 ⟩ of nucleon unpolarized, polarized, and transversity parton distribution functions. Two lattice QCD ensembles at the physical pion mass are used, which were generated using a tree-level Symanzik-improved gauge action and 2+1 flavor tree-level improved Wilson Clover fermions coupling via 2-level HEX-smearing. Leveraging a wide set of operators, two extraction methods for the matrix elements, and the automatic inclusion of model uncertainties via bootstrapped model averages, we extract values of the third Mellin moments. Furthermore, this is the first direct calculation of these observables performed at the physical pion mass.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Formulation of a Consistent Multi‐Species Canopy Description for Hydrodynamic Models Embedded in Large‐Scale Land‐Surface Representations of Mixed‐Forests

Abstract The plant hydrodynamic approach represents a recent advancement to land surface modeling, in which stomatal conductance responds to water availability in the xylem rather than in the soil. To provide a realistic representation of tree hydrodynamics, hydrodynamic models must resolve processes at the level of a single modeled tree, and then scale the resulting fluxes to the canopy and land surface. While this tree‐to‐canopy scaling is trivial in a homogeneous canopy, mixed‐species canopies require careful representation of the species properties and a scaling approach that results in a realistic description of both the canopy and individual‐tree hydrodynamics, as well as leaf‐level fluxes from the canopy and their forcing. Here, we outline advantages and pitfalls of three commonly used approaches for representing mixed forests in land surface models and present a new framework for scaling vegetation characteristics and fluxes in mixed forests. The new formulation scales fluxes from the tree to canopy level in an energy‐ and mass‐conservative way and allows for a consistent multi‐species/multi‐type canopy description by hydrodynamic models.

Bohrer, G.↗

Leaf turgor loss point shapes local and regional distributions of evergreen but not deciduous tropical trees

Summary The effects of climate change on tropical forests will depend on how diverse tropical tree species respond to drought. Current distributions of evergreen and deciduous tree species across local and regional moisture gradients reflect their ability to tolerate drought stress, and might be explained by functional traits. We measured leaf water potential at turgor loss (i.e. ‘wilting point’; π tlp ), wood density (WD) and leaf mass per area (LMA) on 50 of the most abundant tree species in central Panama. We then tested their ability to explain distributions of evergreen and deciduous species within a 50 ha plot on Barro Colorado Island and across a 70 km rainfall gradient spanning the Isthmus of Panama. Among evergreen trees, species with lower π tlp were associated with drier habitats, with π tlp explaining 28% and 32% of habitat association on local and regional scales, respectively, greatly exceeding the predictive power of WD and LMA. In contrast, π tlp did not predict habitat associations among deciduous species. Across spatial scales, π tlp is a useful indicator of habitat preference for tropical tree species that retain their leaves during periods of water stress, and holds the potential to predict vegetation responses to climate change.

59 BASIC BIOLOGICAL SCIENCES↗