Search NASA⌕ Search

SEARCH · Search NASA

Results for “chlorophyll concentration”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 37 records · Page 2
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

A novel random forest approach to revealing interactions and controls on chlorophyll concentration and bacterial communities during coastal phytoplankton blooms

Abstract Increasing occurrence of harmful algal blooms across the land–water interface poses significant risks to coastal ecosystem structure and human health. Defining significant drivers and their interactive impacts on blooms allows for more effective analysis and identification of specific conditions supporting phytoplankton growth. A novel iterative Random Forests (iRF) machine-learning model was developed and applied to two example cases along the California coast to identify key stable interactions: (1) phytoplankton abundance in response to various drivers due to coastal conditions and land-sea nutrient fluxes, (2) microbial community structure during algal blooms. In Example 1, watershed derived nutrients were identified as the least significant interacting variable associated with Monterey Bay phytoplankton abundance. In Example 2, through iRF analysis of field-based 16S OTU bacterial community and algae datasets, we independently found stable interactions of prokaryote abundance patterns associated with phytoplankton abundance that have been previously identified in laboratory-based studies. Our study represents the first iRF application to marine algal blooms that helps to identify ocean, microbial, and terrestrial conditions that are considered dominant causal factors on bloom dynamics.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2014

The Effects of Chlorophyll Assimilation on Carbon Fluxes in a Global Biogeochemical Model

In this paper, we investigated whether the assimilation of remotely-sensed chlorophyll data can improve the estimates of air-sea carbon dioxide fluxes (FCO2). Using a global, established biogeochemical model (NASA Ocean Biogeochemical Model, NOBM) for the period 2003-2010, we found that the global FCO2 values produced in the free-run and after assimilation were within -0.6 mol C m(sup -2) y(sup -1) of the observations. The effect of satellite chlorophyll assimilation was assessed in 12 major oceanographic regions. The region with the highest bias was the North Atlantic. Here the model underestimated the fluxes by 1.4 mol C m(sup -2) y(sup -1) whereas all the other regions were within 1 mol C m(sup -2) y(sup -1) of the data. The FCO2 values were not strongly impacted by the assimilation, and the uncertainty in FCO2 was not decreased, despite the decrease in the uncertainty in chlorophyll concentration. Chlorophyll concentrations were within approximately 25% of the database in 7 out of the 12 regions, and the assimilation improved the chlorophyll concentration in the regions with the highest bias by 10-20%. These results suggest that the assimilation of chlorophyll data does not considerably improve FCO2 estimates and that other components of the carbon cycle play a role that could further improve our FCO2 estimates.

Biogeochemical Model↗
NASA NTRS1972

Radiometric ocean color surveys through a scattering atmosphere

A series of aircraft flights has been initiated to measure the spectral reflectance of ocean waters containing various concentrations of chlorophyll. The results of both the theoretical and experimental investigations indicate that satellite-borne radiometers can sense ocean color. However, the accuracy to which the chlorophyll concentration can be measured appears to be 0.1 to 0.4 mg/cu m depending upon solar zenith angles. These accuracies are less than desired by many of the oceanographers and an effort is being made to improve the quality of the chlorophyll concentration determination. Further measurements will be made in areas with higher chlorophyll concentration in order to better understand the relationship between chlorophyll concentration and ocean color. Also the effects of high water turbidity will be investigated.

Curran, R. J.↗
NASA NTRS2015

Completing the Feedback Loop: The Impact of Chlorophyll Data Assimilation on the Ocean State

In anticipation of the integration of a full biochemical model into the next generation GMAO coupled system, an intermediate solution has been implemented to estimate the penetration depth (1Kd_PAR) of ocean radiation based on the chlorophyll concentration. The chlorophyll is modeled as a tracer with sources-sinks coming from the assimilation of MODIS chlorophyll data. Two experiments were conducted with the coupled ocean-atmosphere model. In the first, climatological values of Kpar were used. In the second, retrieved daily chlorophyll concentrations were assimilated and Kd_PAR was derived according to Morel et al (2007). No other data was assimilated to isolate the effects of the time-evolving chlorophyll field. The daily MODIS Kd_PAR product was used to validate the skill of the penetration depth estimation and the MERRA-OCEAN re-analysis was used as a benchmark to study the sensitivity of the upper ocean heat content and vertical temperature distribution to the chlorophyll input. In the experiment with daily chlorophyll data assimilation, the penetration depth was estimated more accurately, especially in the tropics. As a result, the temperature bias of the model was reduced. A notably robust albeit small (2-5 percent) improvement was found across the equatorial Pacific ocean, which is a critical region for seasonal to inter-annual prediction.

MERRA-OCEAN↗
NASA NTRS1986

Effects of nitrogen fertilization on growth and reflectance characteristics of winter wheat

The use of remote sensing to determine seasonal changes in agronomic and spectral properties of winter wheat canopies with different levels of N fertilization is investigated. Field experiments were conducted at Purdue Agronomy Farm, West Lafayette, IN during the 1978-1979 and 1979-1980 growing season. Spectral reflectance, total leaf N concentration, leaf chlorophyll concentration, leaf are index (LAI), and fresh and dry phytomass are measured and analyzed. Three distinct wheat canopies are detected for the O, 60, and 120 kg N/ha levels of fertilization; it is observed that with an increase in N the reflectance in the visible, and middle IR wavelengths decrease, and the IR reflectance is increased. The canopies with 120 kg N/ha display the highest LAI, maintain green leaf area the longest, and increase in fresh and dry phytomass. The relationship between spectral and agronomic variables is examined; the effect of changing chlorophyll concentration and LAI on the reflectance is studied.

Hinzman, L. D.↗
DOE OSTI2023

Charge transfer as a mechanism for chlorophyll fluorescence concentration quenching

Highly concentrated solutions of chlorophyll display rapid fluorescence quenching. The same devastating energy loss is not seen in photosynthetic light-harvesting antenna complexes, despite the need for chromophores to be in close proximity to facilitate energy transfer. A promising, though unconfirmed mechanism for the observed quenching is energy transfer from an excited chlorophyll monomer to a closely associated chlorophyll pair that subsequently undergoes rapid nonradiative decay to the ground state via a short-lived intermediate charge-transfer state. In this work, we make use of newly emerging fast methods in quantum chemistry to assess the feasibility of this proposed mechanism. We calculate rate constants for the initial charge separation, based on Marcus free-energy surfaces extracted from molecular dynamics simulations of solvated chlorophyll pairs, demonstrating that this pathway will compete with fluorescence (i.e., drive quenching) at experimentally measured quenching concentrations. We show that the rate of charge separation is highly sensitive to interchlorophyll distance and the relative orientations of chromophores within a quenching pair. We discuss possible solvent effects on the rate of charge separation (and consequently the degree of quenching), using the light-harvesting complex II (LH2) protein from rps. acidophila as a specific example of how this process might be controlled in a protein environment. Crucially, we reveal that the LH2 antenna protein prevents quenching, even at the high chlorophyll concentrations required for efficient energy transfer, by restricting the range of orientations that neighboring chlorophyll pairs can adopt.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Anoxia begets anoxia: A positive feedback to the deoxygenation of temperate lakes

Abstract Declining oxygen concentrations in the deep waters of lakes worldwide pose a pressing environmental and societal challenge. Existing theory suggests that low deep‐water dissolved oxygen (DO) concentrations could trigger a positive feedback through which anoxia (i.e., very low DO) during a given summer begets increasingly severe occurrences of anoxia in following summers. Specifically, anoxic conditions can promote nutrient release from sediments, thereby stimulating phytoplankton growth, and subsequent phytoplankton decomposition can fuel heterotrophic respiration, resulting in increased spatial extent and duration of anoxia. However, while the individual relationships in this feedback are well established, to our knowledge, there has not been a systematic analysis within or across lakes that simultaneously demonstrates all of the mechanisms necessary to produce a positive feedback that reinforces anoxia. Here, we compiled data from 656 widespread temperate lakes and reservoirs to analyze the proposed anoxia begets anoxia feedback. Lakes in the dataset span a broad range of surface area (1–126,909 ha), maximum depth (6–370 m), and morphometry, with a median time‐series duration of 30 years at each lake. Using linear mixed models, we found support for each of the positive feedback relationships between anoxia, phosphorus concentrations, chlorophyll a concentrations, and oxygen demand across the 656‐lake dataset. Likewise, we found further support for these relationships by analyzing time‐series data from individual lakes. Our results indicate that the strength of these feedback relationships may vary with lake‐specific characteristics: For example, we found that surface phosphorus concentrations were more positively associated with chlorophyll a in high‐phosphorus lakes, and oxygen demand had a stronger influence on the extent of anoxia in deep lakes. Taken together, these results support the existence of a positive feedback that could magnify the effects of climate change and other anthropogenic pressures driving the development of anoxia in lakes around the world.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2017

Forecasting Ocean Chlorophyll in the Equatorial Pacific

Using a global ocean biogeochemical model combined with a forecast of physical oceanic and atmospheric variables from the NASA Global Modeling and Assimilation Office, we assess the skill of a chlorophyll concentrations forecast in the Equatorial Pacific for the period 2012-2015 with a focus on the forecast of the onset of the 2015 El Niño event. Using a series of retrospective 9-month hindcasts, we assess the uncertainties of the forecasted chlorophyll by comparing the monthly total chlorophyll concentration from the forecast with the corresponding monthly ocean chlorophyll data from the Suomi-National Polar-orbiting Partnership Visible Infrared Imaging Radiometer Suite (S-NPP VIIRS) satellite. The forecast was able to reproduce the phasing of the variability in chlorophyll concentration in the Equatorial Pacific, including the beginning of the 2015-2016 El Niño. The anomaly correlation coefficient (ACC) was significant (p less than 0.05) for forecast at 1-month (R=0.33), 8-month (R=0.42) and 9-month (R=0.41) lead times. The root mean square error (RMSE) increased from 0.0399 microgram ch1 L(exp -1) for the 1-month lead forecast to a maximum of 0.0472 microgram ch1 L(exp -1) for the 9-month lead forecast indicating that the forecast of the amplitude of chlorophyll concentration variability was getting worse. Forecasts with a 3-month lead time were on average the closest to the S-NPP VIIRS data (23% or 0.033 microgram ch1 L(exp -1)) while the forecast with a 9-month lead time were the furthest (31% or 0.042 microgram ch1 L(exp -1)). These results indicate the potential for forecasting chlorophyll concentration in this region but also highlights various deficiencies and suggestions for improvements to the current biogeochemical forecasting system. This system provides an initial basis for future applications including the effects of El Niño events on fisheries and other ocean resources given improvements identified in the analysis of these results.

Anomaly Correlation Coefficient (ACC)↗
NASA NTRS2018

Assessing the Skill of Chlorophyll Forecasts: Latest Development and Challenges Ahead Using the Case of the Equatorial Pacific

Using a global ocean biogeochemical model combined with a forecast of physical oceanic and atmospheric variables from the NASA Global Modeling and Assimilation Office, we assess the skill of a chlorophyll concentrations forecast in the Equatorial Pacific for the period 2012-2015 with a focus on the forecast of the onset of the 2015 El Nino event. Using a series of retrospective 9-month hindcasts, we assess the uncertainties of the forecasted chlorophyll by comparing the monthly total chlorophyll concentration from the forecast with the corresponding monthly ocean chlorophyll data from the Suomi-National Polar-orbiting Partnership Visible Infrared Imaging Radiometer Suite (S-NPP VIIRS) satellite. The forecast was able to reproduce the phasing of the variability in chlorophyll concentration in the Equatorial Pacific, including the beginning of the 2015-2016 El Nino. The anomaly correlation coefficient (ACC) was significant (p less than 0.05) for forecast at 1-month (R=0.33), 8-month (R=0.42) and 9-month (R=0.41) lead times. The root mean square error (RMSE) increased from 0.0399 microgram chl L(exp -1) for the 1-month lead forecast to a maximum of 0.0472 microgram chl L(exp -1) for the 9-month lead forecast indicating that the forecast of the amplitude of chlorophyll concentration variability was getting worse. Forecasts with a 3-month lead time were on average the closest to the S-NPP VIIRS data (23% or 0.033 microgram chl L(exp -1)) while the forecast with a 9-month lead time were the furthest (31% or 0.042 microgram chl L(exp -1)). These results indicate the potential for forecasting chlorophyll concentration in this region but also highlights various deficiencies and suggestions for improvements to the current biogeochemical forecasting system. This system provides an initial basis for future applications including the effects of El Nino events on fisheries and other ocean resources given improvements identified in the analysis of these results.

El Nin↗
NASA NTRS2021

Interrelationships of Sea Surface Salinity, Chlorophyll-α Concentration, and Sea Surface Temperature near the Antarctic Ice Edge

Satellite data can now provide a coherent picture of sea surface salinity (SSS), chlorophyll-α concentration (Chlα), sea surface temperature (SST), and sea ice cover across the Southern Ocean. The availability of these data at the basin scale enables novel insight into the physical and biological processes in an area that has historically been difficult to gather in situ data from. The analysis shows large regional and interannual variability of these parameters but also strong coherence across the Southern Ocean. The covariability of the parameters near the marginal ice zone shows a generally negative relationship between SSS and Chlα (r = −0.87). This may in part be attributed to the large seasonality of the variables, but analysis of data within the spring period (from November to December) shows similarly high correlation (r = −0.81). This is the first time that a large-scale robust connection between low salinity and high phytoplankton concentration during ice melt period has been quantified. Chlorophyll-α concentration is also well correlated with SST (r = 0.79) providing a potential indicator of the strength of the temperature limitation on primary productivity in the region. The observed correlation also varied regionally due to differences in ice melt patterns during spring and summer. Overall, this study provides new insights into the physical characteristics of the Southern Ocean as observed from space. In a continually warming and freshening Southern Ocean, the relationships observed here provide a key data source for testing ocean biogeochemical models and assessing the effect of sea ice–ocean processes on primary production.

Cynthia Garcia-Eidell↗
NASA NTRS1984

Growth and reflectance characteristics of winter wheat canopies

A valuable input to crop growth and yield models would be estimates of current crop condition. If multispectral reflectance indicates crop condition, then remote sensing may provide an additional tool for crop assessment. The effects of nitrogen fertilization on the spectral reflectance and agronomic characteristics of winter wheat (Triticum aestivum L.) were determined through field experiments. Spectral reflectance was measured during the 1979 and 1980 growing seasons with a spectroradiometer. Agronomic data included total leaf N concentration, leaf chlorophyll concentration, stage of development, leaf area index (LAI), plant moisture, and fresh and dry phytomass. Nitrogen deficiency caused increased visible, reduced near infrared, and increased middle infrared reflectance. These changes were related to lower levels of chlorophyll and reduced leaf area in the N-deficient plots. Green LAI, an important descriptor of wheat canopies, could be reliably estimated with multispectral data. The potential of remote sensing in distinguishing stressed from healthy crops is demonstrated. Evidence suggests multispectral imagery may be useful for monitoring crop condition.

Hinzman, L. D.↗
NASA NTRS1974

Marine resources

Techniques have been developed for defining coastal circulation patterns using sediment as a natural tracer, allowing the formulation of new circulation concepts in some geographical areas and, in general, a better capability for defining the seasonal characteristics of coastal circulation. An analytical technique for measurement of absolute water depth based upon the ratios of two MSS channels has been developed. Suspended sediment has found wide use as a tracer, but a few investigators have reported limited success in measuring the type and amount of sediment quantitatively from ERTS-1 digital data. Significant progress has been made in developing techniques for using ERTS-1 data to locate, identify, and monitor sea and lake ice. Ice features greater than 70 meters in width can be detected, and both arctic and antarctic icebergs have been identified. In the application area of living marine resources, the use of ERTS-1 image-density patterns as a potential indicator of fish school location has been demonstrated for one coastal commercial resource, menhaden. ERTS-1 data have been used to locate ocean current boundaries using ERTS-1 image-density enhancement, and some techniques are under development for measurement of suspended particle concentration and chlorophyll concentration. The interrelationship of water color and surface characteristics (sea state) are also being studied to improve spectral and spatial interpretive techniques.

Tilton, E. L., III↗
NASA NTRS2001

Biogeochemical Response to Mesoscale Physical Forcing in the California Current System

In the first part of the project, we investigated the local response of the coastal ocean ecosystems (changes in chlorophyll, concentration and chlorophyll, fluorescence quantum yield) to physical forcing by developing and deploying Autonomous Drifting Ocean Stations (ADOS) within several mesoscale features along the U.S. west coast. Also, we compared the temporal and spatial variability registered by sensors mounted in the drifters to that registered by the sensors mounted in the satellites in order to assess the scales of variability that are not resolved by the ocean color satellite. The second part of the project used the existing WOCE SVP Surface Lagrangian drifters to track individual water parcels through time. The individual drifter tracks were used to generate multivariate time series by interpolating/extracting the biological and physical data fields retrieved by remote sensors (ocean color, SST, wind speed and direction, wind stress curl, and sea level topography). The individual time series of the physical data (AVHRR, TOPEX, NCEP) were analyzed against the ocean color (SeaWiFS) time-series to determine the time scale of biological response to the physical forcing. The results from this part of the research is being used to compare the decorrelation scales of chlorophyll from a Lagrangian and Eulerian framework. The results from both parts of this research augmented the necessary time series data needed to investigate the interactions between the ocean mesoscale features, wind, and the biogeochemical processes. Using the historical Lagrangian data sets, we have completed a comparison of the decorrelation scales in both the Eulerian and Lagrangian reference frame for the SeaWiFS data set. We are continuing to investigate how these results might be used in objective mapping efforts.

Niiler, Pearn P.↗
NASA NTRS2013

Regional to Global Assessments of Phytoplankton Dynamics From The SeaWiFS Mission

Photosynthetic production of organic matter by microscopic oceanic phytoplankton fuels ocean ecosystems and contributes roughly half of the Earth's net primary production. For 13 years, the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) mission provided the first consistent, synoptic observations of global ocean ecosystems. Changes in the surface chlorophyll concentration, the primary biological property retrieved from SeaWiFS, have traditionally been used as a metric for phytoplankton abundance and its distribution largely reflects patterns in vertical nutrient transport. On regional to global scales, chlorophyll concentrations covary with sea surface temperature (SST) because SST changes reflect light and nutrient conditions. However, the oceanmay be too complex to be well characterized using a single index such as the chlorophyll concentration. A semi-analytical bio-optical algorithm is used to help interpret regional to global SeaWiFS chlorophyll observations from using three independent, well-validated ocean color data products; the chlorophyll a concentration, absorption by CDM and particulate backscattering. First, we show that observed long-term, global-scale trends in standard chlorophyll retrievals are likely compromised by coincident changes in CDM. Second, we partition the chlorophyll signal into a component due to phytoplankton biomass changes and a component caused by physiological adjustments in intracellular chlorophyll concentrations to changes in mixed layer light levels. We show that biomass changes dominate chlorophyll signals for the high latitude seas and where persistent vertical upwelling is known to occur, while physiological processes dominate chlorophyll variability over much of the tropical and subtropical oceans. The SeaWiFS data set demonstrates complexity in the interpretation of changes in regional to global phytoplankton distributions and illustrates limitations for the assessment of phytoplankton dynamics using chlorophyll retrievals alone.

phytoplankton↗
NASA NTRS1981

An algorithm for computing chlorophyll-a concentrations using a dual-frequency fluorosensor

An algorithm to be used on data from a dual-frequency fluorosensor (i.e. one using two wavelengths for excitation of chlorophyll-a fluorescence) to compute total chlorophyll-a concentration and to partition that chlorophyll between two color groups present in a mixed phytoplankton population is described. The algorithm is based on laboratory and field-testing experience gained with the airborne lidar oceanographic probing experiment fluorosensor.

Campbell, J. W.↗
NASA NTRS2000

OCTS And Seawifs Bio-Optical Algorithm and Product Vaildattion and Intercomparison in US Coastal Waters

Monitoring the health of U.S. coastal waters is an important goal of the National Oceanic and Atmospheric Administration (NOAA). Satellite sensors are capable of providing daily synoptic data of large expanses of the U.S. coast. Ocean color sensor, in particular, can be used to monitor the water quality of coastal waters on an operational basis. To appraise the validity of satellite-derived measurements, such as chlorophyll concentration, the bio-optical algorithms used to derive them must be evaluated in coastal environments. Towards this purpose, over 21 cruises in diverse U.S. coastal waters have been conducted. Of these 21 cruises, 12 have been performed in conjunction with and under the auspices of the NASA/SIMBIOS Project. The primary goal of these cruises has been to obtain in-situ measurements of downwelling irradiance, upwelling radiance, and chlorophyll concentrations in order to evaluate bio-optical algorithms that estimate chlorophyll concentration. In this Technical Memorandum, we evaluate the ability of five bio-optical algorithms, including the current SeaWiFS algorithm, to estimate chlorophyll concentration in surface waters of the South Atlantic Bight (SAB). The SAB consists of a variety of environments including coastal and continental shelf regimes, Gulf Stream waters, and the Sargasso Sea. The biological and optical characteristics of the region is complicated by temporal and spatial variability in phytoplankton composition, primary productivity, and the concentrations of colored dissolved organic matter (CDOM) and suspended sediment. As such, the SAB is an ideal location to test the robustness of algorithms for coastal use.

Brow, Chirstopher↗
NASA NTRS2001

OCTS and SeaWiFS Bio-Optical Algorithm and Product Validation and Intercomparison in US Coastal Waters

Monitoring the health of US coastal waters is an important goal of the National Oceanic and Atmospheric Administration (NOAA). Satellite sensors are capable of providing daily synoptic data of large expanses of the US coast. Ocean color sensors, in particular, can be used to monitor the water quality of coastal waters on an operational basis. To appraise the validity of satellite-derived measurements, such as chlorophyll concentration, the bio-optical algorithms used to derive them must be evaluated in coastal environments. Towards this purpose, over 21 cruises in diverse US coastal waters have been conducted. Of these 21 cruises, 12 have been performed in conjunction with and under the auspices of the NASA/Sensor Intercomparison and Merger for Biological and Interdisciplinary Oceanic Studies (SIMBIOS) Project. The primary goal of these cruises has been to obtain in-situ measurements of downwelling irradiance, upwelling radiance, and chlorophyll concentrations in order to evaluate bio-optical algorithms that estimate chlorophyll concentration. In this Technical Memorandum, we evaluate the ability of five bio-optical algorithms, including the current Sea-Viewing Wide Field-of-view Sensor (SeaWiFS) algorithm, to estimate chlorophyll concentration in surface waters of the South Atlantic Bight (SAB). The SAB consists of a variety of environments including coastal and continental shelf regimes, Gulf Stream waters, and the Sargasso Sea. The biological and optical characteristics of the region is complicated by temporal and spatial variability in phytoplankton composition, primary productivity, and the concentrations of colored dissolved organic matter (CDOM) and suspended sediment. As such, the SAB is an ideal location to test the robustness of algorithms for coastal use.

Brown, Christopher W.↗