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DOE OSTI2015

Evolution of linear perturbations in Lemaítre-Tolman-Bondi void models

We study the evolution of linear perturbations in a Lemaítre-Tolman-Bondi (LTB) void model with realistic cosmological initial conditions. Linear perturbation theory in LTB models is substantially more complicated than in standard Friedmann universes as the inhomogeneous background causes gauge-invariant perturbations couple at first order. As shown by Clarkson et al. (2009) [1], the evolution is constrained by a system of linear partial differential equations which need to be integrated numerically. We present a new numerical scheme using finite element methods to solve this equation system and generate scalar initial conditions based on Gaussian random fields with an underlying power spectrum for the Bardeen potential. After spherical harmonic decomposition, the initial fluctuations are propagated in time and estimates of angular power spectra of each gauge invariant variable are computed as functions of redshift. This allows to analyse the coupling strength in a statistical way. We find significant couplings up to 25% for large and deep voids of Gpc scale as required to fit the distance redshift relations of SNe.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2015

HYSTERESIS BETWEEN DISTINCT MODES OF TURBULENT DYNAMOS

Nonlinear mean-field models of the solar dynamo show long-term variability, which may be relevant to different states of activity inferred from long-term radiocarbon data. This paper is aimed at probing the dynamo hysteresis predicted by the recent mean-field models of Kitchatinov and Olemskoy with direct numerical simulations. We perform three-dimensional (3D) simulations of large-scale dynamos in a shearing box with helically forced turbulence. As an initial condition, we either take a weak random magnetic field or we start from a snapshot of an earlier simulation. Two quasi-stable states are found to coexist in a certain range of parameters close to the onset of the large-scale dynamo. The simulations converge to one of these states depending on the initial conditions. When either the fractional helicity or the magnetic Prandtl number is increased between successive runs above the critical value for onset of the dynamo, the field strength jumps to a finite value. However, when the fractional helicity or the magnetic Prandtl number is then decreased again, the field strength stays at a similar value (strong field branch) even below the original onset. We also observe intermittent decaying phases away from the strong field branch close to the point where large-scale dynamo action is just possible. The dynamo hysteresis seen previously in mean-field models is thus reproduced by 3D simulations. Its possible relation to distinct modes of solar activity such as grand minima is discussed.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Local structure graph models with higher-order dependence

Local structure graph models (LSGMs) describe random graphs and networks as a Markov random field (MRF)—each graph edge has a specified conditional distribution dependent on explicit neighbourhoods of other graph edges. Centered parameterizations of LSGMs allow for direct control and interpretation of parameters for large- and small-scale structures (e.g., marginal means vs. dependence). Here, we extend this parameterization to account for triples of dependent edges and illustrate the importance of centered parameterizations for incorporating covariates and interpreting parameters. Using a MRF framework, common exponential random graph models are also shown to induce conditional distributions without centered parameterizations and thereby have undesirable features. This work attempts to advance graph models through conditional model specifications with modern parameterizations, covariates and higher-order dependencies.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2025

Polynomial Chaos Surrogate Construction for Random Fields with Parametric Uncertainty

Engineering and applied science rely on computational experiments to rigorously study physical systems. The mathematical models used to probe these systems are highly complex, and sampling-intensive studies often require prohibitively many simulations for acceptable accuracy. Surrogate models provide a means of circumventing the high computational expense of sampling such complex models. In particular, polynomial chaos expansions (PCEs) have been successfully used for uncertainty quantification studies of deterministic models where the dominant source of uncertainty is parametric. We discuss an extension to conventional PCE surrogate modeling to enable surrogate construction for stochastic computational models that have intrinsic noise in addition to parametric uncertainty. We develop a PCE surrogate on a joint space of intrinsic and parametric uncertainty, enabled by Rosenblatt transformations, which are evaluated via kernel density estimation of the associated conditional cumulative distributions. Furthermore, we extend the construction to random field data via the Karhunen–Loève expansion. We then take advantage of closed-form solutions for computing PCE Sobol indices to perform a global sensitivity analysis of the model which quantifies the intrinsic noise contribution to the overall model output variance. Additionally, the resulting joint PCE is generative in the sense that it allows generating random realizations at any input parameter setting that are statistically approximately equivalent to realizations from the underlying stochastic model. The method is demonstrated on a chemical catalysis example model and a synthetic example controlled by a parameter that enables a switch from unimodal to bimodal response distributions.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2022

Augmented Gaussian random field: Theory and computation

We propose the novel augmented Gaussian random field (AGRF), which is a universal framework incorporating the data of observable and derivatives of any order. Rigorous theory is established. We prove that under certain conditions, the observable and its derivatives of any order are governed by a single Gaussian random field, which is the aforementioned AGRF. As a corollary, the statement "the derivative of a Gaussian process remains a Gaussian process" is validated, since the derivative is represented by a part of the AGRF. Moreover, a computational method corresponding to the universal AGRF framework is constructed. Both noiseless and noisy scenarios are considered. Formulas of the posterior distributions are deduced in a nice closed form. A significant advantage of our computational method is that the universal AGRF framework provides a natural way to incorporate arbitrary order derivatives and deal with missing data. We use four numerical examples to demonstrate the effectiveness of the computational method. The numerical examples are composite function, damped harmonic oscillator, Korteweg-De Vries equation, and Burgers' equation.

Mathematics↗

DOE OSTI2020

A Predictive Model for Survival of Escherichia coli O157:H7 and Generic E. coli in Soil Amended with Untreated Animal Manure

Abstract This study aimed at developing a predictive model that captures the influences of a variety of agricultural and environmental variables and is able to predict the concentrations of enteric bacteria in soil amended with untreated Biological Soil Amendments of Animal Origin (BSAAO) under dynamic conditions. We developed and validated a Random Forest model using data from a longitudinal field study conducted in mid‐Atlantic United States investigating the survival of Escherichia coli O157:H7 and generic E. coli in soils amended with untreated dairy manure, horse manure, or poultry litter. Amendment type, days of rain since the previous sampling day, and soil moisture content were identified as the most influential agricultural and environmental variables impacting concentrations of viable E. coli O157:H7 and generic E. coli recovered from amended soils. Our model results also indicated that E. coli O157:H7 and generic E. coli declined at similar rates in amended soils under dynamic field conditions.The Random Forest model accurately predicted changes in viable E. coli concentrations over time under different agricultural and environmental conditions. Our model also accurately characterized the variability of E. coli concentration in amended soil over time by providing upper and lower prediction bound estimates. Cross‐validation results indicated that our model can be potentially generalized to other geographic regions and incorporated into a risk assessment for evaluating the risks associated with application of untreated BSAAO. Our model can be validated for other regions and predictive performance also can be enhanced when data sets from additional geographic regions become available.

Pang, Hao↗

DOE OSTI2020

Multi-scale dynamics of magnetic flux tubes and inverse magnetic energy transfer

Here, we report on an analytical and numerical study of the dynamics of a three-dimensional array of identical magnetic flux tubes in the reduced-magnetohydrodynamic description of the plasma. We propose that the long-time evolution of this system is dictated by flux-tube mergers, and that such mergers are dynamically constrained by the conservation of the pertinent (ideal) invariants, viz. the magnetic potential and axial fluxes of each tube. We also propose that in the direction perpendicular to the merging plane, flux tubes evolve in a critically balanced fashion. These notions allow us to construct an analytical model for how quantities such as the magnetic energy and the energy-containing scale evolve as functions of time. Of particular importance is the conclusion that, like its two-dimensional counterpart, this system exhibits an inverse transfer of magnetic energy that terminates only at the system scale. We perform direct numerical simulations that confirm these predictions and reveal other interesting aspects of the evolution of the system. We find, for example, that the early time evolution is characterized by a sharp decay of the initial magnetic energy, which we attribute to the ubiquitous formation of current sheets. We also show that a quantitatively similar inverse transfer of magnetic energy is observed when the initial condition is a random, small-scale magnetic seed field.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2016

Detection of correlated fragments in a sequence of images by superimposed Fourier holograms

The problem of detecting correlated fragments in a sequence of images recorded by the superimposing holograms within the Fourier holography scheme with angular multiplication of a spatially modulated reference beam is considered. The approach to the solution of this problem is based on the properties of the variance of the image sum. It is shown that this problem can be solved by providing a constant distance between the signal and reference images when recording superimposed holograms and a partial mutual correlatedness of reference images. The detection efficiency is analysed from the point of view of estimated image data capacity, the degree of mutual correlation of reference images, and the hologram recording conditions. The results of a numerical experiment under the most complicated conditions (representation of images by realisations of homogeneous random fields) confirm the theoretical conclusions. (holographic memory)

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2018

A Note on Exponential Decay in the Random Field Ising Model

For the two-dimensional random field Ising model (RFIM) with bimodal (i.e., two-valued) external field, we prove exponential decay of correlations either (i) when the temperature is larger than the critical temperature of the Ising model without external field and the magnetic field strength is small or (ii) at any temperature when the magnetic field strength is sufficiently large. Unlike previous work on exponential decay, our approach is not based on cluster expansions but rather on arguably simpler methods; these combine an analysis of the Kertész line and a coupling of Ising measures (and also their random cluster representations) with different boundary conditions. We also show similar but weaker results for the RFIM with a general field distribution and in any dimension.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2021

Evaluation of residual gas fraction estimation methods for cycle-to-cycle combustion variability analysis and modeling

Cycle-to-cycle combustion variability in spark-ignition engines during normal operation is mainly caused by random perturbations of the in-cylinder conditions such as the flow velocity field, homogeneity of the air-fuel distribution, spark energy discharge, and turbulence intensity of the flame front. Such perturbations translate into the variability of the energy released observed at the end of the combustion process. During normal operating conditions, the cycle-to-cycle variability (CCV) of the energy release behaves as random uncorrelated noise. However, during diluted combustion, in either the form of exhaust gas recirculation (EGR) or excess air (lean operation), the CCV tends to increase as dilution increases. Moreover, when the ignition limit is reached at high dilution levels, the combustion CCV is exacerbated by sporadic occurrences of incomplete combustion events, and the uncorrelation assumption no longer holds. The low or null energy released by partial burns and misfires has an impact on the following combustion event due to the residual gas that carries burned and unburned gases, which contributes to the deterministic coupling between engine cycles. Many residual gas fraction estimation methods, however, only address the nominal case where complete combustion occurs and combustion events are uncorrelated. Here we evaluate the efficacy of such methods on capturing the effects of partial burns and misfires on the residual gas estimate for high-EGR operation. The advantages and disadvantages of each method are discussed based on their ability to generate cycle-to-cycle estimates. Finally, a comparison between the different estimation techniques is presented based on their usefulness for control-oriented modeling.

42 ENGINEERING↗

DOE OSTI2019

Acceleration of charged particles to extremely large energies by a sub-Dreicer electric field

Acceleration of a fraction of initially low-energy electrons in a cold, collisional plasma to energies orders of magnitude larger than thermal is shown to be possible with a sub-Dreicer electric field. Because such an electric field does not satisfy the runaway condition, any acceleration will be statistical. Random scattering collisions are probabilistic such that there is 63% chance that a particle collides after traveling one mean free path and a 37% chance of not colliding. If one considers only the electrons that do not collide on traversing a mean free path and also considers that the collisional mean free path scales quadratically with particle kinetic energy, one realizes that there will be a small fraction of electrons that never collide and are accelerated to increasingly high energy. Because the mean free path scales quadratically with kinetic energy, after each successfully traveled mean free path, continued acceleration becomes more likely. This model is applied to an MHD-driven plasma jet experiment at Caltech and it is shown that electrons are accelerated by an electric field associated with a fast magnetic reconnection event occurring as the jet breaks apart. This statistical acceleration model indicates that a fraction ~1.3 × 10 -7 of electrons with initial energy distributed according to a Maxwellian with T = 2 eV will be accelerated to 6 keV in the Caltech experiment and then collide to produce the observed X-ray signal. It is demonstrated that the statistical acceleration model provides a credible explanation for the production of solar energetic electrons.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2014

Quantum transport equation for systems with rough surfaces and its application to ultracold neutrons in a quantizing gravity field

We discuss transport of particles along random rough surfaces in quantum size effect conditions. As an intriguing application, we analyze gravitationally quantized ultracold neutrons in rough waveguides in conjunction with GRANIT experiments (ILL, Grenoble). We present a theoretical description of these experiments in the biased diffusion approximation for neutron mirrors with both one- and two-dimensional (1D and 2D) roughness. All system parameters collapse into a single constant which determines the depletion times for the gravitational quantum states and the exit neutron count. This constant is determined by a complicated integral of the correlation function (CF) of surface roughness. The reliable identification of this CF is always hindered by the presence of long fluctuation-driven correlation tails in finite-size samples. We report numerical experiments relevant for the identification of roughness of a new GRANIT waveguide and make predictions for ongoing experiments. We also propose a radically new design for the rough waveguide.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2021

Closures and Simulation for Thermal Radiation Transport in Stochastic Media with Nonlinear Temperature Dependence

Because of the practical challenge of rendering very complex realistic spatial structures for numerical work, it is common practice to resort to characterizing such media as stochastic mixtures of materials, ideally parametrized with low order statistics such as the mean, variance, and correlation functions of the now random material properties. This enables realizations of the medium to be repeatedly generated and radiation transport computations to, in principle, be performed for a large ensemble of these realizations to obtain a statistically well-characterized radiation field. Statistical post-processing yields desired quantities such as conditional and unconditional mean radiation flux and probability distributions of transmitted radiation. However, such computations prove expensive for all but the simplest stochastic geometries and are most suited for benchmarking approximate models. The most common approximations lead to homogenized media so that transport computations are required only on a single medium realization but by construct provide only limited statistical information on the radiation field. Almost all approximate approaches to this problem attempt to develop equations for low order moments of the radiation intensity (mean, second moment, correlation function) but inevitably encounter a closure problem: the equation for any statistical moment will contain terms depending on unknown higher-order moments. Thus, the challenge shifts to one of developing closure relations that relate the unknown moments to the lower order moments. Under very special conditions, an exact closure can be derived but in general closures are heuristically stated constitutive relations. Also, closure approaches depend on whether the mixing statistics are spatially and/or temporally continuous as in fluctuating turbulent fields, or discontinuous as in randomly mixed solid chunks of material. Thus, unconditional averaging is generally applied in the former case but conditional averaging is more appropriate when the mixing is discontinuous. In this work, the emphasis is on binary statistical mixtures of immiscible fluids as as such the quantities of interest are averages (flux, temperature) conditioned on the material type.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2015

Algorithms for propagating uncertainty across heterogeneous domains

We address an important research area in stochastic multi-scale modeling, namely the propagation of uncertainty across heterogeneous domains characterized by partially correlated processes with vastly different correlation lengths. This class of problems arise very often when computing stochastic PDEs and particle models with stochastic/stochastic domain interaction but also with stochastic/deterministic coupling. The domains may be fully embedded, adjacent or partially overlapping. The fundamental open question we address is the construction of proper transmission boundary conditions that preserve global statistical properties of the solution across different subdomains. Often, the codes that model different parts of the domains are black-box and hence a domain decomposition technique is required. No rigorous theory or even effective empirical algorithms have yet been developed for this purpose, although interfaces defined in terms of functionals of random fields (e.g., multi-point cumulants) can overcome the computationally prohibitive problem of preserving sample-path continuity across domains. The key idea of the different methods we propose relies on combining local reduced-order representations of random fields with multi-level domain decomposition. Specifically, we propose two new algorithms: The first one enforces the continuity of the conditional mean and variance of the solution across adjacent subdomains by using Schwarz iterations. The second algorithm is based on PDE-constrained multi-objective optimization, and it allows us to set more general interface conditions. The effectiveness of these new algorithms is demonstrated in numerical examples involving elliptic problems with random diffusion coefficients, stochastically advected scalar fields, and nonlinear advection-reaction problems with random reaction rates.

Cho, Heyrim↗

DOE OSTI2015

NONLINEAR EFFECTS IN PARTICLE TRANSPORT IN STOCHASTIC MAGNETIC FIELDS

Collisional particle transport in stochastic magnetic fields is studied using a semi-analytical method. The aim is to determine the influence of the nonlinear effects that occur in the magnetic field line random walk on particle transport. We show that particle transport coefficients can be strongly influenced by the magnetic line trapping. The conditions that correspond to these nonlinear regimes are determined. We also analyze the effects produced by the space variation of the large-scale magnetic field. We show that an average drift is generated by the gradient of the magnetic field, which strongly increases and reverses its orientation in the nonlinear regime.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

Turbulent-like flows in quasi two-dimensional dense suspensions of motile colloids

Dense bacterial suspensions exhibit turbulent-like flows at low Reynolds numbers, driven by the activity of the microswimmers. In this study, we develop a model system to examine these dynamics using motile colloids that mimic bacterial locomotion. The colloids are powered by the Quincke instability, which causes them to spontaneously roll in a random-walk pattern when exposed to a square-wave electric field. We experimentally investigate the flow dynamics in dense suspensions of these Quincke random walkers under quasi two-dimensional conditions, where the particle size is comparable to the gap between the electrodes. The results suggest a scaling regime in the energy spectrum ∼k −4 at high wavenumbers, observed consistently across activity levels and particle concentrations. We observe that velocity time correlations decay within a single period of the square-wave field, yet an anti-correlation appears between successive field applications, indicative of a dynamic structural memory of the ensemble.

Luo, Rui [Northwestern Univ., Evanston, IL (United↗

DOE OSTI2016

SU-G-IeP4-03: Cone Beam X-Ray Luminescence Computed Tomography Based On Generalized Gaussian Markov Random Field

Purpose: Cone beam X-ray luminescence computed tomography (CB-XLCT), which aims to achieve molecular and functional imaging by X-rays, has recently been proposed as a new imaging modality. However, the inverse problem of CB-XLCT is seriously ill-conditioned, hindering us to achieve good image quality. In this work, a novel reconstruction method based on Bayesian theory is proposed to tackle this problem Methods: Bayesian theory provides a natural framework for utilizing various kinds of available prior information to improve the reconstruction image quality. A generalized Gaussian Markov random field (GGMRF) model is proposed here to construct the prior model of the Bayesian theory. The most important feature of GGMRF model is the adjustable shape parameter p, which can be continuously adjusted from 1 to 2. The reconstruction image tends to have more edge-preserving property when p is slide to 1, while having more noise tolerance property when p is slide to 2, just like the behavior of L1 and L2 regularization methods, respectively. The proposed method provides a flexible regularization framework to adapt to a wide range of applications. Results: Numerical simulations were implemented to test the performance of the proposed method. The Digimouse atlas were employed to construct a three-dimensional mouse model, and two small cylinders were placed inside to serve as the targets. Reconstruction results show that the proposed method tends to obtain better spatial resolution with a smaller shape parameter, while better signal-to-noise image with a larger shape parameter. Quantitative indexes, contrast-to-noise ratio (CNR) and full-width at half-maximum (FWHM), were used to assess the performance of the proposed method, and confirmed its effectiveness in CB-XLCT reconstruction. Conclusion: A novel reconstruction method for CB-XLCT is proposed based on GGMRF model, which enables an adjustable performance tradeoff between L1 and L2 regularization methods. Numerical simulations were conducted to demonstrate its performance.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2025

Dependence of Convective Cloud Microphysical Properties on Environmental Conditions during the TRACER and ESCAPE Field Campaigns: A Synergistic Approach of Observations, Machine Learning and Parcel Models

The sensitivity of convective clouds to aerosols and their interactions with environment, combined with limited observational constraints in parameterizations, introduces significant uncertainties in atmospheric models. Here, this study investigates the dependence of convective cloud microphysical properties on environmental conditions using a synergistic approach that combines unique observations from the TRACER and ESCAPE field campaigns, machine learning techniques, and parcel model simulations with a super-droplet microphysics scheme. A random forest algorithm identifies in-situ vertical velocity (w), temperature (T), and surface fine-mode aerosol mass concentration as the three most important environmental conditions influencing cloud properties including liquid water content (LWC), number concentration for particles with D max < 50 μm (N c ,<50), 50 μm ≤ D max ≤ 3000 μm (N c,50–3000 ), and droplet effective diameter (D e ). Results show that LWC, N c,<50 , and N c,50–3000 significantly increase with w in updrafts. Across w bins, as T decreases, LWC, D e , and N c,50–3000 increase, while N c,<50 decreases, which are closely linked to the distance above cloud bases. Warmer cloud bases yield higher LWC, greater N c,50–3000 , and smaller N c,<50 , while polluted environments produce greater N c,<50 . Parcel model simulations successfully replicate these observed dependencies. The simulation results indicate that warmer cloud bases enhance condensation generating larger droplets, and differences in droplet sizes are then amplified through collision-coalescence, resulting in a greater N c,50–3000 . Polluted conditions result in a greater N c,<50 primarily due to enhanced cloud condensation nuclei activation despite increased collision-coalescence rates compared to pristine conditions. This study provides observed quantitative patterns characterizing cloud microphysical properties as a function of key environmental parameters, offering valuable constraints for improving physics parameterizations and numerical models.

54 ENVIRONMENTAL SCIENCES↗