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Fast event-based electron counting for small-molecule structure determination by MicroED

Electron counting helped realize the resolution revolution in single-particle cryoEM and is now accelerating the determination of MicroED structures. Its advantages are best demonstrated by new direct electron detectors capable of fast (kilohertz) event-based electron counting (EBEC). This strategy minimizes the inaccuracies introduced by coincidence loss (CL) and promises rapid determination of accurate structures. We used the Direct Electron Apollo camera to leverage EBEC technology for MicroED data collection. Given its ability to count single electrons, the Apollo collects high-quality MicroED data from organic small-molecule crystals illuminated with incident electron beam flux densities as low as 0.01–0.045 e − /Å 2 /s. Under even the lowest flux density (0.01 e − /Å 2 /s) condition, fast EBEC data produced ab initio structures of a salen ligand (268 Da) and biotin (244 Da). Each structure was determined from a 100° wedge of data collected from a single crystal in as few as 50 s, with a delivered fluence of only ∼0.5 e − /Å 2 . Fast EBEC data collected with a fluence of 2.25 or 3.33 e − /Å 2 also facilitated a 1.5 Å structure of thiostrepton (1665 Da). While refinement of these structures appeared unaffected by CL, a CL adjustment applied to EBEC data further improved the distribution of intensities measured from the salen ligand and biotin crystals. However, CL adjustment only marginally improved the refinement of their corresponding structures, signaling the already high counting accuracy of detectors with counting rates in the kilohertz range. Overall, by delivering low-dose structure-worthy data, fast EBEC collection strategies open new possibilities for high-throughput MicroED.

EBEC↗

High-count-rate effects in event processing for the XRISM/Resolve X-ray microcalorimeter. II. Energy scale and resolution in orbit

The Resolve instrument on the X-ray Imaging and Spectroscopy Mission (XRISM) uses a 36 pixel microcalorimeter designed to deliver high-resolution, non-dispersive X-ray spectroscopy. Although it is optimized for extended sources with low count rates, Resolve observations of bright point sources are still able to provide unique insights into the physics of these objects, as long as high-count-rate effects are addressed in the analysis. These effects include the loss of exposure time for each pixel, changes in the energy scale, and changes in the energy resolution. To investigate these effects under realistic observational conditions, we observed the bright X-ray source, the Crab Nebula, with XRISM at several offset positions with respect to the Resolve field of view and with continuous illumination from 55 Fe sources on the filter wheel. For the spectral analysis, we excluded data where exposure-time loss was too significant to ensure reliable spectral statistics. The energy scale at 6 keV shows a slight negative shift in the high-count-rate regime. The energy resolution at 6 keV worsens as the count rate in electrically neighboring pixels increases, but can be restored by applying a nearest-neighbor coincidence cut (“cross-talk cut”). We examined how these effects influence the observation of bright point sources, using GX 13+1 as a test case, and identified an eV-scale energy offset at 6 keV between the inner (brighter) and outer (fainter) pixels. Users who seek to analyze velocity structures on the order of tens of km s–1 should account for such high-count-rate effects. These findings will aid in the interpretation of Resolve data from bright sources and provide valuable considerations for designing and planning for future microcalorimeter missions.

X-rays: general↗

Power counting of the pion-dilaton effective field theory

Confining QCD-like theories close to the conformal window have a “walking” coupling. This is believed to lead to a light singlet scalar meson in the low-energy spectrum, a dilaton, which is the pseudo-Nambu-Goldstone boson for the approximate scale symmetry. Extending chiral perturbation theory to include the dilaton requires a new small parameter to control the dilaton mass and its interactions. In our previous work we derived a systematic power counting for the dilaton couplings by matching the effective low-energy theory to the underlying theory using mild assumptions. In this paper we examine two alternative power countings which were proposed in the literature based on a phenomenological picture for the conformal transition. We find that one of these power countings fails, in fact, to generate a systematic expansion; the other coincides with the power counting we derived. We also point out that the so-called Δ -potential coincides with the tree-level potential of the former, invalid, power counting. Published by the American Physical Society 2025

Golterman, Maarten (ORCID:0000000319830672)↗

Correction for nonlinear photon counting effects in lidar systems

Photomultiplier tubes (PMT's) employed in the photon counting (PC) mode of operation are widely used as detectors in lidar systems. In our laboratory, we have developed a versatile Nd:YAG lidar which is used for measurement of both the middle atmosphere and the troposphere. With this system, we encounter a very wide range of signal levels ranging from the extremely weak signals from the top of the mesosphere to the very strong returns from low level clouds. Although the system is capable of operating the PMT's in either the analog detection or photon counting mode, we find that often when we use photon counting we have portions of our lidar return which contain very useful information but are not within the linear operating regime of the PC system. We report the results of our efforts to explore the extent to which such high intensity PC signals can be quantitatively analyzed. In particular, a useful model relating the mean 'true' count rate and the observed count rate is presented and it's application to our system demonstrated. This model takes into account the variation in height of the PMT output pulses and the effect of the pulse height discrimination threshold.

Donovan, D. P.↗

High background photon counting lidar

Photon counting with lidar returns is usually limited to low light levels, while wide dynamic range is achieved by counting for long times. The broad emission spectrum of inexpensive high-power semiconductor lasers makes receiver filters pass too much background light for traditional photon counting in daylight. Very high speed photon counting is possible, however, at more than 500 MHz which allows the construction of eyesafe lidar operating in the presence of bright clouds. Detector improvements are possible to count to 20 GHz producing a single shot dynamic range of ten decades.

Lentz, W. J.↗

Deep imaging of high redshift QSO fields below the Lyman limit. II - Number counts and colors of field galaxies

We present an analysis of the number counts and colors of faint galaxies to about 26.5 mag in the fields of two high Galactic latitude, very-high-redshift QSOs. We concentrate on the general properties of the field galaxies at faint magnitudes. In particular, we readdress the faint galaxy number counts and colors as a function of apparent magnitude and we reexamine the possible contribution of very-high-redshift galaxies to the faint samples. We find that the number counts to R = 26 are well fitted by the relation log N(m) = 0.31R + C. The G-band counts for the same galaxies are consistent with the same slope fainter than G about 23.5, but exhibit a much steeper slope at brighter magnitudes. At R = 25.5, the differential number counts have reached about 1.2 x 10 exp 5/sq deg; the same surface density of galaxies is reached at G = 26.5. We confirm the existence of a gradual 'blueing' trend of the field galaxies toward fainter apparent magnitude; however, the blueing trend appears to extend only as faint as G about 24, fainter than which both the (G-R) and (U sub n-G) colors appear to level off. The mean colors of faint galaxies are considerably redder than flat spectrum. There are essentially no objects to R = 26 which have spectral energy distributions which are bluer than flat spectrum. The potential contribution of very-high-redshift galaxies may have been underestimated in previous analyses; the current data are consistent with the same population of relatively luminous galaxies at z about 3 as exist at z about 0.7.

Steidel, Charles C.↗

Multiparameter linear least-squares fitting to Poisson data one count at a time

A standard problem in gamma-ray astronomy data analysis is the decomposition of a set of observed counts, described by Poisson statistics, according to a given multicomponent linear model, with underlying physical count rates or fluxes which are to be estimated from the data. Despite its conceptual simplicity, the linear least-squares (LLSQ) method for solving this problem has generally been limited to situations in which the number n(sub i) of counts in each bin i is not too small, conventionally more than 5-30. It seems to be widely believed that the failure of the LLSQ method for small counts is due to the failure of the Poisson distribution to be even approximately normal for small numbers. The cause is more accurately the strong anticorrelation between the data and the wieghts w(sub i) in the weighted LLSQ method when square root of n(sub i) instead of square root of bar-n(sub i) is used to approximate the uncertainties, sigma(sub i), in the data, where bar-n(sub i) = E(n(sub i)), the expected value of N(sub i). We show in an appendix that, avoiding this approximation, the correct equations for the Poisson LLSQ (PLLSQ) problems are actually identical to those for the maximum likelihood estimate using the exact Poisson distribution. We apply the method to solve a problem in high-resolution gamma-ray spectroscopy for the JPL High-Resolution Gamma-Ray Spectrometer flown on HEAO 3. Systematic error in subtracting the strong, highly variable background encountered in the low-energy gamma-ray region can be significantly reduced by closely pairing source and background data in short segments. Significant results can be built up by weighted averaging of the net fluxes obtained from the subtraction of many individual source/background pairs. Extension of the approach to complex situations, with multiple cosmic sources and realistic background parameterizations, requires a means of efficiently fitting to data from single scans in the narrow (approximately = 1.2 keV, HEAO 3) energy channels of a Ge spectrometer, where the expected number of counts obtained per scan may be very low. Such an analysis system is discussed and compared to the method previously used.

Wheaton, Wm. A.↗

Simulations of deep galaxy fields. 1: Monte Carlo simulations of optical and near-infrared counts

Monte Carlo simulations of three-dimensional galaxy distributions are performed, following the 1988 prescription of Chokshi & Wright, to study the photometric properties of evolving galaxy populations in the optical and near-infrared bands to high redshifts. In this paper, the first of a series, we present our baseline model in which galaxy numbers are conserved, and in which no explicit 'starburst' population is included. We use the model in an attempt to simultaneously fit published blue and near-infrared photometric and spectroscopic observations of deep fields. We find that our baseline models, with a formation redshift, z(sub f), of 1000, and H(sub 0) = 50, are able to reproduce the blue counts to b(sub j) = 22, independent of the value of Omega(sub 0), and also to provide a satisfactory fit to the observed blue-band redshift distributions, but for no value of Omega(sub 0) do we achieve an acceptable fit to the fainter blue counts. In the K band, we fit the number counts to the limit of the present-day surveys only for an Omega(sub 0) = 0 cosmology. We investigate the effect on the model fits of varying the cosmological parameters H(sub 0), the formation red-shift z(sub f), and the local luminosity function. Changing H(sub 0) does not improve the fits to the observations. However, reducing the epoch of a galaxy formation used in our simulations has a substantial effect. In particular, a model with z(sub f) approximately equal to 5 in a low Omega(sub 0) universe improves the fit to the faintest photometric blue data without any need to invoke a new population of galaxies, substantial merging, or a significant starburst galaxy population. For an Omega(sub 0) = 1 universe, however, reducing z(sub f) is less successful at fitting the blue-band counts and has little effect at all at K. Varying the parameters of the local luminosity function can also have a significant effect. In particular the steep low end slope of the local luminosity function of Franceschini et al. allows an acceptable fit to the b(sub j) less than or equal to 25 counts for Omega(sub 0) = 1, but is incompatible with Omega(sub 0) = 0.

Chokshi, Arati↗

Ultraviolet Galaxy Counts From STIS Observations of The Hubble Deep Fields

We present galaxy counts in the near and far ultraviolet (NUV and FUV) obtained from Space Telescope Imaging Spectrograph (STIS) observations of portions of the Hubble Deep Field North, (HDFN), the Hubble Deep Field South, (HDFS) and a parallel field near the HDFN. All three fields have deep (AB>29) optical imaging, and we determine magnitudes by taking the ultraviolet flux detected within the limiting optical isophote. An analysis of the UV-optical colors of detected objects, combined with a visual inspection of the UV images, indicates that there are no detectable objects in the UV images which are not also detected in the optical. We measure the detection area and completeness as a function of magnitude by taking the size-magnitude distribution of galaxies in the entire HDFN WFPC2 V+I image, applying the measured UV-optical colors from the detected galaxies, and determining the total area over which each galaxy would have been detected in the UV images. The average area for the simulated galaxies in each UV magnitude bin, (including galaxies which would not be detected at all), provides the effective area and completeness for the bin. We test this procedure with Monte Carlo simulations. The galaxy counts reach to AB=29 in both the NUV and FUV; 1 magnitude fainter than the HDF F30OW counts, and 7 magnitudes fainter than balloon-based counts. We compare our measured counts to various models.

Gardner, J. P.↗

InGaAsP Avalanche Photodetectors for Non-Gated 1.06 micrometer Photon-Counting Receivers

The efficient detection of single photons at 1.06 micron is of considerable interest for lidar/ladar systems designed for remote sensing an d ranging as well as for free-space optical transmission in photon-st arved applications. However, silicon-based single photon avalanche diodes (SPADs) used at shorter wavelengths have very low single photon d etection efficiency (approximately 1 - 2%) at 1.06 micron, and InP/In GaAs SPADs designed for telecommunications wavelengths near 1.5 micro n exhibit high dark count rates that generally inhibit non-gated (free-running) operation. To bridge this "single photon detection gap" for wavelengths just beyond 1 micron, we have developed high performance , large area (80 - 200 micron diameter) InP-based InGaAsP quaternary absorber SPADs optimized for operation at 1.06 micron and based on a highly reliable planar geometry avalanche photodiode structure. We wil l show that dark count rates are sufficiently low to allow for non-ga ted operation while achieving detection efficiencies far surpassing t hose found for Si SPADs. At a detection efficiency of 10%, 80 micron diameter devices exhibit dark count rates below 1000 Hz and count rate s of at least 3 MHz when operated at -40 C. Significantly higher dete ction efficiencies (30 - 50%) are achievable with acceptable tradeoff s in dark count rate. In this paper, we will also discuss performance modeling for these devices and compare their behavior with longer wav elength InP-based InGaAs ternary absorber SPADs fabricated on a relat ed device design platform.

Itzler, Mark A.↗

The Herschel-ATLAS: Extragalatic Number Counts from 250 to 500 Microns

Aims.The Herschel-ATLAS survey (H-ATLAS) will be the largest area survey to be undertaken by the Herschel Space Observatory. It will cover 550 sq. deg. of extragalactic sky at wavelengths of 100, 160, 250, 350 and 500 microns when completed, reaching flux limits (50-) from 32 to 145mJy. We here present galaxy number counts obtained for SPIRE observations of the first -14 sq. deg. observed at 250, 350 and 500 m. Methods. Number counts are a fundamental tool in constraining models of galaxy evolution. We use source catalogs extracted from the H-ATLAS maps as the basis for such an analysis. Correction factors for completeness and flux boosting are derived by applying our extraction method to model catalogs and then applied to the raw observational counts. Results. We find a steep rise in the number counts at flux levels of 100-200mJy in all three SPIRE bands, consistent with results from BLAST. The counts are compared to a range of galaxy evolution models. None of the current models is an ideal fit to the data but all ascribe the steep rise to a population of luminous, rapidly evolving dusty galaxies at moderate to high redshift.

Clements, D. L.↗

Photon Counting Using Edge-Detection Algorithm

New applications such as high-datarate, photon-starved, free-space optical communications require photon counting at flux rates into gigaphoton-per-second regimes coupled with subnanosecond timing accuracy. Current single-photon detectors that are capable of handling such operating conditions are designed in an array format and produce output pulses that span multiple sample times. In order to discern one pulse from another and not to overcount the number of incoming photons, a detection algorithm must be applied to the sampled detector output pulses. As flux rates increase, the ability to implement such a detection algorithm becomes difficult within a digital processor that may reside within a field-programmable gate array (FPGA). Systems have been developed and implemented to both characterize gigahertz bandwidth single-photon detectors, as well as process photon count signals at rates into gigaphotons per second in order to implement communications links at SCPPM (serial concatenated pulse position modulation) encoded data rates exceeding 100 megabits per second with efficiencies greater than two bits per detected photon. A hardware edge-detection algorithm and corresponding signal combining and deserialization hardware were developed to meet these requirements at sample rates up to 10 GHz. The photon discriminator deserializer hardware board accepts four inputs, which allows for the ability to take inputs from a quadphoton counting detector, to support requirements for optical tracking with a reduced number of hardware components. The four inputs are hardware leading-edge detected independently. After leading-edge detection, the resultant samples are ORed together prior to deserialization. The deserialization is performed to reduce the rate at which data is passed to a digital signal processor, perhaps residing within an FPGA. The hardware implements four separate analog inputs that are connected through RF connectors. Each analog input is fed to a high-speed 1-bit comparator, which digitizes the input referenced to an adjustable threshold value. This results in four independent serial sample streams of binary 1s and 0s, which are ORed together at rates up to 10 GHz. This single serial stream is then deserialized by a factor of 16 to create 16 signal lines at a rate of 622.5 MHz or lower for input to a high-speed digital processor assembly. The new design and corresponding hardware can be employed with a quad-photon counting detector capable of handling photon rates on the order of multi-gigaphotons per second, whereas prior art was only capable of handling a single input at 1/4 the flux rate. Additionally, the hardware edge-detection algorithm has provided the ability to process 3-10 higher photon flux rates than previously possible by removing the limitation that photoncounting detector output pulses on multiple channels being ORed not overlap. Now, only the leading edges of the pulses are required to not overlap. This new photon counting digitizer hardware architecture supports a universal front end for an optical communications receiver operating at data rates from kilobits to over one gigabit per second to meet increased mission data volume requirements.

Gin, Jonathan W.↗

The NuSTAR Extragalactic Surveys: The Number Counts Of Active Galactic Nuclei And The Resolved Fraction Of The Cosmic X-ray Background

We present the 3-8 kiloelectronvolts and 8-24 kiloelectronvolts number counts of active galactic nuclei (AGNs) identified in the Nuclear Spectroscopic Telescope Array (NuSTAR) extragalactic surveys. NuSTAR has now resolved 33 percent -39 percent of the X-ray background in the 8-24 kiloelectronvolts band, directly identifying AGNs with obscuring columns up to approximately 10 (exp 25) per square centimeter. In the softer 3-8 kiloelectronvolts band the number counts are in general agreement with those measured by XMM-Newton and Chandra over the flux range 5 times 10 (exp -15) less than or approximately equal to S (3-8 kiloelectronvolts) divided by ergs per second per square centimeter less than or approximately equal to 10 (exp -12) probed by NuSTAR. In the hard 8-24 kiloelectronvolts band NuSTAR probes fluxes over the range 2 times 10 (exp -14) less than or approximately equal to S (8-24 kiloelectronvolts) divided by ergs per second per square centimeter less than or approximately equal to 10 (exp -12), a factor approximately 100 times fainter than previous measurements. The 8-24 kiloelectronvolts number counts match predictions from AGN population synthesis models, directly confirming the existence of a population of obscured and/or hard X-ray sources inferred from the shape of the integrated cosmic X-ray background. The measured NuSTAR counts lie significantly above simple extrapolation with a Euclidian slope to low flux of the Swift/BAT15-55 kiloelectronvolts number counts measured at higher fluxes (S (15-55 kiloelectronvolts) less than or approximately equal to 10 (exp -11) ergs per second per square centimeter), reflecting the evolution of the AGN population between the Swift/BAT local (redshift is less than 0.1) sample and NuSTAR's redshift approximately equal to 1 sample. CXB (Cosmic X-ray Background) synthesis models, which account for AGN evolution, lie above the Swift/BAT measurements, suggesting that they do not fully capture the evolution of obscured AGNs at low redshifts

nucle↗

PhotonIDs: ML-Powered Photon Identification System for Dark Count Elimination

Reliable single photon detection is the foundation for practical quantum communication and networking. However, today's superconducting nanowire single photon detector(SNSPD) inherently fails to distinguish between genuine photon events and dark counts, leading to degraded fidelity in long-distance quantum communication. In this work, we introduce PhotonIDs, a machine learning-powered photon identification system that is the first end-to-end solution for real-time discrimination between photons and dark count based on full SNSPD readout signal waveform analysis. PhotonIDs ~demonstrates: 1) an FPGA-based high-speed data acquisition platform that selectively captures the full waveform of signal only while filtering out the background data in real time; 2) an efficient signal preprocessing pipeline, and a novel pseudo-position metric that is derived from the physical temporal-spatial features of each detected event; 3) a hybrid machine learning model with near 98% accuracy achieved on photon/dark count classification. Additionally, proposed PhotonIDs ~ is evaluated on the dark count elimination performance with two real-world case studies: (1) 20 km quantum link, and (2) Erbium ion-based photon emission system. Our result demonstrates that PhotonIDs ~could improve more than 31.2 times of signal-noise-ratio~(SNR) on dark count elimination. PhotonIDs ~ marks a step forward in noise-resilient quantum communication infrastructure.

Linne, Karl C. [Chicago U.] (ORCID:000900091870358↗

The SRG/eROSITA All-Sky Survey: Constraints on the structure growth from cluster number counts

Recent advancements in methods used in wide-area surveys have demonstrated the reliability of the number density of galaxy clusters as a viable tool for precision cosmology. Beyond testing the current cosmological paradigm, cluster number counts can also be used to investigate the discrepancies currently affecting cosmological measurements. In particular, cosmological studies based on cosmic shear and other large-scale structure probes routinely find a value for the amplitude of the fluctuations in the universe S​ 8 = σ 8 (Ω m /0.3) 0.5 smaller than the one inferred from the primary cosmic microwave background. In this work, we investigate this tension by measuring structure evolution across cosmic time as probed by the number counts of massive halos with the first SRG/eROSITA All-Sky Survey cluster catalog in the western Galactic hemisphere, complemented with the overlapping Dark Energy Survey Year-3, Kilo-Degree Survey, and Hyper Suprime-Cam data for weak lensing mass calibration, by implementing two different parameterizations and a model-agnostic method. In the first model, we measured the cosmic linear growth index as γ = 1.19 ± 0.21, which is in tension with the standard value of γ = 0.55 but in good statistical agreement with other large-scale structure probes. The second model is a phenomenological scenario in which we rescale the linear matter power spectrum at low redshift to investigate a potential reduction of structure formation, and it provided similar results. Finally, in a third strategy, we considered a standard ΛCDM cosmology, but we separated the cluster catalog into five redshift bins, measuring the cosmological parameters in each and inferring the evolution of the structure formation, finding hints of a reduction. Interestingly, the S ​8 value inferred from the number counts of the cluster eRASS1 when we add a degree of freedom to the matter power spectrum recovers the value inferred by cosmic shear studies. The observed reduction in the growth rate or systematic uncertainties associated with various measurements may account for the discrepancy in the S 8 ​ values suggested between cosmic shear probes and eROSITA cluster number counts and Planck CMB measurements.

cosmological parameters↗

High-count rate effects in event processing for XRISM/ Resolve X-ray microcalorimeter: I. Ground test

The spectroscopic performance of an X-ray microcalorimeter is compromised at high count rates. We utilize the Resolve X-ray microcalorimeter onboard the XRISM satellite to examine the effects observed during high-count rate measurements and propose modeling approaches to mitigate them. We specifically address the following instrumental effects that impact performance: CPU limit, pile-up, and untriggered electrical cross-talk. Experimental data at high count rates were acquired during ground testing using the flight model instrument and a calibration X-ray source. In the experiment, data processing not limited by the performance of the onboard CPU was run in parallel, which cannot be done in orbit. This makes it possible to access the data degradation caused by limited CPU performance. We use these data to develop models that allow for a more accurate estimation of the aforementioned effects. To illustrate the application of these models in observation planning, we present a simulated observation of GX 13+1. Understanding and addressing these issues is crucial to enhancing the reliability and precision of X-ray spectroscopy in situations characterized by elevated count rates.

47 OTHER INSTRUMENTATION↗

One-count memory circuit prevents machine mode interaction

One-count memory logic circuit used with electromechanical counter-printer machines operates in either count or print mode. The circuit advances the counter when the machine is in the count mode and provides storage for the count pulse when the machine is in the print mode.

De~forest, B.↗

Predicted star counts in selected fields and photometric bands Applications to galactic structure, the disk luminosity function, and the detection of a massive halo

Tables are presented of predicted star counts in 17 selected directions on the sky as a function of apparent B, V, R, and I magnitudes and absolute visual magnitudes calculated from the Bahcall-Soneira Galaxy model. It is noted that eight of the fields were selected ab initio for their usefulness in determining from star counts either parameters of galactic structure, the faint end of the disk luminosity function, or the detection of a massive stellar halo. Star counts in specified fields to m sub I = 19 mag are able to reveal the faint end of the disk luminosity function down to the end of the hydrogen-burning main sequence. It is thought that star counts at high galactic latitudes to m sub I = 22 mag should reveal the stellar constituents of a massive halo if they are massive enough to be on the hydrogen-burning main sequence.

Bahcall, J. N.↗