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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 37 records · Page 2

Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing

The cyanobacterial phylum encompasses oxygenic photosynthetic prokaryotes of a great breadth of morphologies and ecologies; they play key roles in global carbon and nitrogen cycles. The chloroplasts of all photosynthetic eukaryotes can trace their ancestry to cyanobacteria. Cyanobacteria also attract considerable interest as platforms for "green" biotechnology and biofuels. To explore the molecular basis of their different phenotypes and biochemical capabilities, we sequenced the genomes of 54 phylogenetically and phenotypically diverse cyanobacterial strains. Comparison of cyanobacterial genomes reveals the molecular basis for many aspects of cyanobacterial ecophysiological diversity, as well as the convergence of complex morphologies without the acquisition of novel proteins. This phylum-wide study highlights the benefits of diversity-driven genome sequencing, identifying more than 21,000 cyanobacterial proteins with no detectable similarity to known proteins, and foregrounds the diversity of light-harvesting proteins and gene clusters for secondary metabolite biosynthesis. Additionally, our results provide insight into the distribution of genes of cyanobacterial origin in eukaryotic nuclear genomes. Moreover, this study doubles both the amount and the phylogenetic diversity of cyanobacterial genome sequence data. Given the exponentially growing number of sequenced genomes, this diversity-driven study demonstrates the perspective gained by comparing disparate yet related genomes in a phylum-wide context and the insights that are gained from it.

59 BASIC BIOLOGICAL SCIENCES↗

Coverage Dependent Charge Reduction of Cationic Gold Clusters on Surfaces Prepared Using Soft Landing of Mass-selected Ions

The ionic charge state of monodisperse cationic gold clusters on surfaces may be controlled by selecting the coverage of mass-selected ions soft landed onto a substrate. Polydisperse diphosphine-capped gold clusters were synthesized in solution by reduction of chloro(triphenylphosphine)gold(I) with borane tert-butylamine in the presence of 1,3-bis(diphenylphosphino)propane. The polydisperse gold clusters were introduced into the gas phase by electrospray ionization and mass selection was employed to select a multiply charged cationic cluster species (Au11L53+, m/z = 1409, L = 1,3-bis(diphenylphosphino)propane) which was delivered to the surfaces of four different self-assembled monolayers on gold (SAMs) at coverages of 1011 and 1012 clusters/mm2. Employing the spatial profiling capabilities of in-situ time-of-flight secondary ion mass spectrometry (TOF-SIMS) it is shown that, in addition to the chemical functionality of the monolayer (as demonstrated previously: ACS Nano, 2012, 6, 573) the coverage of cationic gold clusters on the surface may be used to control the distribution of ionic charge states of the soft-landed multiply charged clusters. In the case of a 1H,1H,2H,2H-perfluorodecanethiol SAM (FSAM) almost complete retention of charge by the deposited Au11L53+ clusters was observed at a lower coverage of 1011 clusters/mm2. In contrast, at a higher coverage of 1012 clusters/mm2, pronounced reduction of charge to Au11L52+ and Au11L5+ was observed on the FSAM. When soft landed onto 16- and 11-mercaptohexadecanoic acid surfaces on gold (16,11-COOH-SAMs), the mass-selected Au11L53+ clusters exhibited partial reduction of charge to Au11L52+ at lower coverage and additional reduction of charge to both Au11L52+ and Au11L5+ at higher coverage. The reduction of charge was found to be more pronounced on the surface of the shorter (thinner) C11 than the longer (thicker) C16-COOH-SAM. On the surface of the 1-dodecanethiol (HSAM) monolayer, the most abundant charge state was found to be Au11L52+ at lower coverage and Au11L5+ at higher coverage, respectively. A coverage-dependent electron tunneling mechanism is proposed to account for the observed reduction of charge of mass-selected multiply charged gold clusters soft landed on SAMs. The results demonstrate that one of the critical parameters that influence the chemical and physical properties of supported metal clusters, ionic charge state, may be controlled by selecting the coverage of charged species soft landed onto surfaces.

charge reductionkk↗

Modeling Coverage Dependence in Surface Reaction Networks

In heterogeneous catalysis molecules adsorb on surfaces and react to form products which desorb. It has been known for a long time that the reactivity of a surface depends on coverage of intermediates, but there had been little work in quantitatively modeling this dependence or in understanding the nature of the coverage dependence. Our work aimed to develop methods for quantitatively modeling the coverage dependence of adsorption energies, and to determine the origin of the coverage dependence. We utilized density functional theory to compute the coverage dependent adsorption energies of many atomic adsorbates (H, C, N, O, and S) on the late transition metal (111) surfaces. We were able to show that the coverage dependence is due to an adsorbate-induced surface electronic structure modification mechanism of the metal atom d-orbitals. Furthermore, we showed the coverage dependence is similar for all of these adsorbates and metal surfaces, enabling the prediction of the coverage dependence of other adsorbates and metals. There are numerous ways that adsorbates can adsorb onto a surface; too many to attempt to compute every possible adsorbate configuration using density functional theory. To address this limitation we used the density functional theory results to construct a simpler model (a cluster expansion) that could be used to enumerate the configurations that could be described by a simple lattice of adsorption sites. The cluster expansion enabled us to show that the similarity in the coverage dependence exists across all coverages. Although the cluster expansion methodology can be extended in principle to multiple adsorbates, adsorption sites and alloys, in practice this is tedious and computationally expensive. As alternative this the cluster expansion approach, we developed a simple model that describes the coverage dependent mechanism that is extendable to alloy surfaces. This model allows large-scale screening studies to be performed, and was used in part of this work to identify sulfur-tolerant alloy catalysts. This grant provided full support one PhD student, Spencer Miller, who now works for Advanced Process Combinatorics, and partial support for another PhD student, Nilay Inoglu, who now works for Exxon Mobil. The work supported by this grant has been published in eight peer-reviewed publications and two book chapters which are listed in section 3. One of the publications (PRB 2010, 82, 045414) was selected as an important scientific contribution within the DOE BES Catalysis Science program for 2011. One final manuscript is nearly completed. This work was presented at four invited academic talks, including an international summer school, seven invited conference talks and 21 contributed talks and posters over the course of the grant.

99 GENERAL AND MISCELLANEOUS↗

MO-FG-CAMPUS-TeP2-04: Optimizing for a Specified Target Coverage Probability

Purpose: The purpose of this work is to develop a method for inverse planning of radiation therapy margins. When using this method the user specifies a desired target coverage probability and the system optimizes to meet the demand without any explicit specification of margins to handle setup uncertainty. Methods: The method determines which voxels to include in an optimization function promoting target coverage in order to achieve a specified target coverage probability. Voxels are selected in a way that retains the correlation between them: The target is displaced according to the setup errors and the voxels to include are selected as the union of the displaced target regions under the x% best scenarios according to some quality measure. The quality measure could depend on the dose to the considered structure alone or could depend on the dose to multiple structures in order to take into account correlation between structures. Results: A target coverage function was applied to the CTV of a prostate case with prescription 78 Gy and compared to conventional planning using a DVH function on the PTV. Planning was performed to achieve 90% probability of CTV coverage. The plan optimized using the coverage probability function had P(D98 > 77.95 Gy) = 0.97 for the CTV. The PTV plan using a constraint on minimum DVH 78 Gy at 90% had P(D98 > 77.95) = 0.44 for the CTV. To match the coverage probability optimization, the DVH volume parameter had to be increased to 97% which resulted in 0.5 Gy higher average dose to the rectum. Conclusion: Optimizing a target coverage probability is an easily used method to find a margin that achieves the desired coverage probability. It can lead to reduced OAR doses at the same coverage probability compared to planning with margins and DVH functions.

60 APPLIED LIFE SCIENCES↗

Constellation Study for Optimized Target Access and Coverage

We have performed a low earth orbiting satellite constellation design parameter space study to determine optimized constellations that satisfies mission goals while minimizing total system costs. Because this is a generic study, we developed a generalized set of mission requirements that would meet the needs of several different types of space missions. Figure of merit parameters were defined to help rank the different constellations under study. Instead of performing a full, multi-dimensional parameter space study, we instead focused on a few exemplar cases. For this generic mission, the baseline requirements were as follows: altitude: 700km, total number of satellites per constellation: 40-100, world coverage: 100% coverage or maximize coverage of populated latitudes, polar coverage: some but not 100% required, multi-ball observations: 2- & 3-ball coverage desired, and target coverage: full coverage or up to 5 minute observing gap for 1-ball coverage at all latitudes. For added conservatism, the minimum target observing elevation angle was 10-degrees and the minimum acceptable time on target was 1 minute. We also only performed the calculations for a Walker constellation (defined as M/M/IP or #planes/# satellites per plane/interplane satellite spacing) instead of “streets-of-coverage” constellations, which at high inclinations can satisfy coverage requirements with slightly fewer satellites.

47 OTHER INSTRUMENTATION↗

Correlation between infrared spectra features and coverage of different adsorption sites for the NO/Pd(111) system

This study investigates the adsorption of nitric oxide (NO) on Pd(111) surfaces at 200 K using infrared reflection absorption spectroscopy (IRRAS). Peak positions and areas are used as proxies for tracking coverage of different species, serving as groundwork for in-situ experiments that need real-time tracking of surface species. Here, we derived a mathematical model correlating NO coverage with dose, consistent with the Molecular Langmuir Model. Distinct correlations are observed between coverage and spectral features (peak position and peak area for the NO vibration): at lower coverages (θ<0.6), the total integrated peak areas are linearly corelated to coverage; at higher coverages (θ>0.6), the peak center for a compressed-hollow site becomes the primary coverage indicator, showing a linear relationship between wavenumber and coverage. Note that this study addresses coverages below saturation. These findings refine our understanding of NO adsorption and establish a foundation for real-time in situ transient kinetics studies of chemical reactions involving NO on Pd(111).

25 ENERGY STORAGE↗

Effect of hydrogen coverage on hydrogenation of o -cresol on Pt(111)

The conversion of phenolics over metal catalysts is an important process for upgrading biofuels. With density functional calculations, hydrogenation of o-cresol on the hydrogen-covered Pt(111) surface was investigated. Here, the results show that the coverage of hydrogen plays a significant role in the reaction rate while it does not affect the reaction selectivity. The reaction barriers of the hydrogenation process leading to the formation of both 2-methyl-cyclohexanone (the intermediate product) and 2-methyl-cyclohexanol (the final product) at high H coverages (~ 1 ML) are found to be smaller by 0.14–0.69 eV than those at lower H coverages (~ 1/25 ML). After both hydrogen and cresol are adsorbed on Pt(111) from their initial gas phase state, the reaction energy of each hydrogenation step on the surface is also dependent on the hydrogen coverage. On the H-covered Pt(111) surface, most steps of hydrogenation involve exothermic reactions when the hydrogen coverage is high while they are endothermic reactions at low hydrogen coverages. The differences in reaction rate and reaction energy between high and low H coverages can be understood with the coverage-dependent bonding strength and configurations.

08 HYDROGEN↗

Controlled site coverage of strong metal–support interaction (SMSI) on Pd NP catalysts

Here, strong metal–support interaction catalysts have been shown to improve desired product selectivity at the cost of fractional rates due to active site coverage. The goal of this study was to determine if the active site coverage of metallic nanoparticles could be controlled to lower levels than have been previously reported in SMSI catalysts with the aim of improving the rate while maintaining high selectivity. 2Pd–XTi/SiO 2 (2 wt% Pd, X wt% Ti) strong metal–support interaction (SMSI) catalysts with Ti loadings between 0–1.0 wt% were synthesized to control Pd nanoparticle coverage. Calcination at 450 °C and reduction at 550 °C were sufficient for forming ~2 nm sized Pd particles in all catalysts. Increasing the Ti loading from 0.1 to 1.0 wt% increased the surface coverage from 40 to 85% at a fixed reduction temperature of 550 °C. The IR spectra of the SMSI catalysts were similar with a high fraction of linear bonded CO which was much higher than that of Pd nanoparticles of similar size. The SMSI overlayer could be removed by oxidation at 350 °C and re-reduction at 200 °C. EXAFS of the oxidized catalysts indicates that nearly full oxidation of the metallic nanoparticle was required to remove the SMSI overlayer. Oxidation temperatures from 30 to 300 °C partially oxidized the Pd nanoparticles and subsequent re-reduction at 200 °C partially decreases the SMSI coverage. The fractional surface coverage was determined by measuring the rate of propylene hydrogenation with and without the SMSI overlayer. Increasing the reduction temperature from 200 to 550 °C increased the SMSI coverage from 0 to 85% depending on the Ti loading and temperature. In conclusion, after reduction at 550 °C and oxidation at 350 °C, the range of coverages varied between ~10% with 0.1 wt% Ti after re-reduction at 300 °C and ~85% with 1 wt% Ti after reduction at 550 °C.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Single-Isocenter Multiple-Target Stereotactic Radiosurgery: Risk of Compromised Coverage

Purpose: To determine the dosimetric effects of rotational errors on target coverage using volumetric modulated arc therapy (VMAT) for multitarget stereotactic radiosurgery (SRS). Methods and Materials: This retrospective study included 50 SRS cases, each with 2 intracranial planning target volumes (PTVs). Both PTVs were planned for simultaneous treatment to 21 Gy using a single-isocenter, noncoplanar VMAT SRS technique. Rotational errors of 0.5°, 1.0°, and 2.0° were simulated about all axes. The dose to 95% of the PTV (D95) and the volume covered by 95% of the prescribed dose (V95) were evaluated using multivariate analysis to determine how PTV coverage was related to PTV volume, PTV separation, and rotational error. Results: At 0.5° rotational error, D95 values and V95 coverage rates were ≥95% in all cases. For rotational errors of 1.0°, 7% of targets had D95 and V95 values <95%. Coverage worsened substantially when the rotational error increased to 2.0°: D95 and V95 values were >95% for only 63% of the targets. Multivariate analysis showed that PTV volume and distance to isocenter were strong predictors of target coverage. Conclusions: The effects of rotational errors on target coverage were studied across a broad range of SRS cases. In general, the risk of compromised coverage increased with decreasing target volume, increasing rotational error and increasing distance between targets. Multivariate regression models from this study may be used to quantify the dosimetric effects of rotational errors on target coverage given patient-specific input parameters of PTV volume and distance to isocenter.

62 RADIOLOGY AND NUCLEAR MEDICINE↗