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NASA Omics Archive Project

The space environment consists of a complex set of hazards including altered gravity, radiation, psychological/physiological stress, isolation, and confinement leading to complex biological responses. Advances in biotechnology capabilities offer considerable potential to provide novel insight into those responses as well as innovative diagnostic, treatment, and countermeasure solutions for astronauts as NASA begins to travel beyond low Earth orbit. Omics data (genomics, transcriptomics, proteomics, etc.) is one example that can provide NASA with critical knowledge of how a crewmember’s genetics, environment, and lifestyle can be used to develop individualized approaches for disease prevention, advance diagnostics, and improve treatment strategies. NASA ventured into the field of omics on human subjects with the successful completion of the NASA Twins Study which was the first step in mapping the multi-omic profile of astronauts to understand and mitigate the health consequences of spaceflight. The Human Research Program aims to build upon the success of the Twins Study with the NASA Omics Archive flight study, establishing a longitudinal biospecimen archive and efficiently generating a comprehensive high-quality multi-omic dataset from astronauts for the purpose of studying molecular, metabolic, and microbial changes associated with longduration spaceflight missions. The goal is to facilitate scientific and medical research community efforts to characterize and mitigate spaceflight health and performance risks. In this presentation, we will review details regarding the biospecimen and data archive to be generated by the NASA Omics Archive flight study. Data generated as part of this project will be archived in the NASA Life Sciences Portal (NLSP) and be made available for future hypothesis-driven research efforts or occupational surveillance through Institutional Review Board-approved data sharing and retrospective data requests submitted to the Life Sciences Data Archive (LSDA) team. We will also present results of a ground study performed to evaluate in-house procedures, new sample collection hardware, and vendor capabilities. The data repository generated and the samples to be archived by this study will enable future research efforts to assess an astronauts’ unique molecular and genetic profile with respect to individual spaceflight responses. Results of which will be instrumental in enabling precision health capabilities to better assess and mitigate spaceflight risks, detect disease states earlier, and actively monitor countermeasure treatments, ultimately improving clinical outcomes during future exploration class missions.

C. A. Theriot

Use of UAS Reports (UREPs) during TCL3 Field Testing

During the NASA Unmanned Aircraft System (UAS) Traffic Management (UTM) Project’s Technical Capability Level 3 (TCL3) demonstration, a service for stakeholders to share weather and aircraft observations was tested. The overall goal was to increase awareness of airspace and weather activity to increase a pilot’s ability to fly safely. To achieve this goal, a mechanism to share data was created, called “UAS Reports” or UREPs, which were generated by client systems and sent to a central data service. The data service provided subscriptions and allowed for data requests to share the reports that had been sent in by stakeholders. To execute this functionality, four FAA (Federal Aviation Administration)-designated UAS test sites performed UREP testing as part of TCL3. NASA provided the centralized service and test site partners flew missions and simulated activity at the test sites to generate data to send to the service. The loop was closed by having other clients (usually other small UAS operators) request those data from the service or subscribe to feeds from the service. Overall, the tests demonstrated the utility of such a service. In this report, the testing setup, data collection, and analysis of results are presented. The concept of UREPs has since been incorporated as a service within NASA’s Conflict Mitigation Model for UTM. The concept will continue to be tested in NASA’s TCL4 activities.

UTM

Spaceport Command and Control System - Support Software Development

The Information Architecture Support (IAS) Team, the component of the Spaceport Command and Control System (SCCS) that is in charge of all the pre-runtime data, was in need of some report features to be added to their internal web application, Information Architecture (IA). Development of these reports is crucial for the speed and productivity of the development team, as they are needed to quickly and efficiently make specific and complicated data requests against the massive IA database. These reports were being put on the back burner, as other development of IA was prioritized over them, but the need for them resulted in internships being created to fill this need. The creation of these reports required learning Ruby on Rails development, along with related web technologies, and they will continue to serve IAS and other support software teams and their IA data needs.

Information Architecture

NASA EOSDIS 20 Years of Data Usage and User Assessment in Support of Open Science Initiative

NASA EOS Data and Information System (EOSDIS) has been distributing data to world-wide users free with open access. Since the launch of NASA’s Terra satellite in 1999, more than 10,000 distinct EOS data products have been archived and distributed by NASA-funded Earth Science data centers encompassed by the EOSDIS. As of September 30, 2022, more than 90 PB of data archived by EOSDIS have been made available to public users and during FY 2023 over 60 PB have been distributed to public users worldwide. Over these twenty and more years, it has shown significant increase in the distribution of various data products. This has been possible due to free and open access of the data thereby a step towards open science initiative. The purposes of this study are 1) to perform a comprehensive investigation of the archive and distribution patterns of EOSDIS data products for last 20 years, 2) to identify and characterize the global user community for those data, 3) analyze the increased demand for data products, 4) evaluate distribution of higher level products because those are the ones most frequently used in the studies of natural disasters by public users (those data requestors not involved directly in the production or validation of the data products.) and contribute globally to the advance scientific understanding of the Earth-Atmosphere Systems. Funded by the Earth Science Data and Information System (ESDIS) Project, the ESDIS Metrics System (EMS) collects archive, distribution, and user information from EOSDIS data centers. The information (comprising all data products including heritage datasets going back to the 1990s) is stored in a relational database from which it can be analyzed in many ways. We present several metrics analyses that include data distribution patterns for all, as well as the most frequently requested data products; and user characterizations by country, domain, and Earth Science discipline (e.g., Land, Ocean, Cryosphere) of the requested products. Due to the enormous quantity of data handled by EOSDIS data centers and requirements of future data systems to archive increasing amounts of Earth Science data from future and current Earth Science missions effectively, the results of this study can provide insight on how the user communities have accessed the data and provide guidance for open science initiative.

Lalit Wanchoo

The NEEDS Data Base Management and Archival Mass Memory System

A Data Base Management System and an Archival Mass Memory System are being developed that will have a 10 to the 12th bit on-line and a 10 to the 13th off-line storage capacity. The integrated system will accept packetized data from the data staging area at 50 Mbps, create a comprehensive directory, provide for file management, record the data, perform error detection and correction, accept user requests, retrieve the requested data files and provide the data to multiple users at a combined rate of 50 Mbps. Stored and replicated data files will have a bit error rate of less than 10 to the -9th even after ten years of storage. The integrated system will be demonstrated to prove the technology late in 1981.

Bailey, G. A.

Integrating a local database into the StarView distributed user interface

A distributed user interface to the Space Telescope Data Archive and Distribution Service (DADS) known as StarView is being developed. The DADS architecture consists of the data archive as well as a relational database catalog describing the archive. StarView is a client/server system in which the user interface is the front-end client to the DADS catalog and archive servers. Users query the DADS catalog from the StarView interface. Query commands are transmitted via a network and evaluated by the database. The results are returned via the network and are displayed on StarView forms. Based on the results, users decide which data sets to retrieve from the DADS archive. Archive requests are packaged by StarView and sent to DADS, which returns the requested data sets to the users. The advantages of distributed client/server user interfaces over traditional one-machine systems are well known. Since users run software on machines separate from the database, the overall client response time is much faster. Also, since the server is free to process only database requests, the database response time is much faster. Disadvantages inherent in this architecture are slow overall database access time due to the network delays, lack of a 'get previous row' command, and that refinements of a previously issued query must be submitted to the database server, even though the domain of values have already been returned by the previous query. This architecture also does not allow users to cross correlate DADS catalog data with other catalogs. Clearly, a distributed user interface would be more powerful if it overcame these disadvantages. A local database is being integrated into StarView to overcome these disadvantages. When a query is made through a StarView form, which is often composed of fields from multiple tables, it is translated to an SQL query and issued to the DADS catalog. At the same time, a local database table is created to contain the resulting rows of the query. The returned rows are displayed on the form as well as inserted into the local database table. Identical results are produced by reissuing the query to either the DADS catalog or to the local table. Relational databases do not provide a 'get previous row' function because of the inherent complexity of retrieving previous rows of multiple-table joins. However, since this function is easily implemented on a single table, StarView uses the local table to retrieve the previous row. Also, StarView issues subsequent query refinements to the local table instead of the DADS catalog, eliminating the network transmission overhead. Finally, other catalogs can be imported into the local database for cross correlation with local tables. Overall, it is believe that this is a more powerful architecture for distributed, database user interfaces.

Silberberg, D. P.

Digital interface for bi-directional communication between a computer and a peripheral device

For transmission of data from the computer to the peripheral, the computer initially clears a flipflop which provides a select signal to a multiplexer. A data available signal or data strobe signal is produced while tht data is being provided to the interface. Setting of the flipflop causes a gate to provide to the peripherial a signal indicating that the interface has data available for transmission. The peripheral provides an acknowledge or strobe signal to transfer the data to the peripheral. For transmission of data from the peripheral to the computer, the computer presents the initially cleared flipflop. A data request signal from the peripheral indicates that the peripheral has data available for transmission to the computer. An acknowledge signal indicates that the interface is ready to receive data from the peripheral and to strobe that data into the interface.

Bond, H. H., Jr.

Intelligent Machines in the 21st Century: Automating the Processes of Inference and Inquiry

The last century saw the application of Boolean algebra toward the construction of computing machines, which work by applying logical transformations to information contained in their memory. The development of information theory and the generalization of Boolean algebra to Bayesian inference have enabled these computing machines. in the last quarter of the twentieth century, to be endowed with the ability to learn by making inferences from data. This revolution is just beginning as new computational techniques continue to make difficult problems more accessible. However, modern intelligent machines work by inferring knowledge using only their pre-programmed prior knowledge and the data provided. They lack the ability to ask questions, or request data that would aid their inferences. Recent advances in understanding the foundations of probability theory have revealed implications for areas other than logic. Of relevance to intelligent machines, we identified the algebra of questions as the free distributive algebra, which now allows us to work with questions in a way analogous to that which Boolean algebra enables us to work with logical statements. In this paper we describe this logic of inference and inquiry using the mathematics of partially ordered sets and the scaffolding of lattice theory, discuss the far-reaching implications of the methodology, and demonstrate its application with current examples in machine learning. Automation of both inference and inquiry promises to allow robots to perform science in the far reaches of our solar system and in other star systems by enabling them to not only make inferences from data, but also decide which question to ask, experiment to perform, or measurement to take given what they have learned and what they are designed to understand.

Knuth, Kevin H.

DDD: Dynamic Database for Diatomics

We have developed as web-based database containing spectra of diatomic moiecuies. All data is computed from first principles, and if a user requests data for a molecule/ion that is not in the database, new calculations are automatically carried out on that species. Rotational, vibrational, and electronic transitions are included. Different levels of accuracy can be selected from qualitatively correct to the best calculations that can be carried out. The user can view and modify spectroscopic constants, view potential energy curves, download detailed high temperature linelists, or view synthetic spectra.

Schwenke, David

Advances to a Global Agroclimatology Solar Insolation and Meteorological Parameter Data Base: Improved Solar Irradiance up to Hourly Temporal Resolution

A primary objective of NASA’s Prediction of Worldwide Energy Resource (POWER) project is to facilitate the use of NASA Earth Science data holdings within the energy, agricultural, and architectural industries. To this end daily averaged solar data from several NASA projects and metrological data from a NASA assimilation model have long been reformatted and via a user friendly web based data portal (https://power.larc.nasa.gov) at the native resolution of each data products. Potential users can access solar and metrological data in a column formatted DSSAT ASCII format by entering single site specific coordinates or from an area by entering the appropriate area coordinates. Upgrades to the POWER data portal have been implemented that result in a complete upgrade of the base solar insolation data products. From the years 1984 through 2000, a new version of the NASA/GEWEX Surface Radiation Budget (SRB) and Clouds is utilized that reduces the RMS relative to surface measurements. Additionally, Clouds and the Earth’s Radiant Energy System (CERES) SYNoptic 1x1 Degree (SYN1Deg) data products are utilized starting from January 1, 2001 through 3 months of real-time. The CERES Fast Longwave and SHortwave radiative Fluxes (FLASHFlux) is still used to provided daily data spanning from the end of SYN1Deg to within 7 days of real-time. Meteorological parameters now are taken from the NASA Modern Era Retrospective-analysis for Research and Applications (MERRA-2) data set which provides higher resolution data products (hourly and 0.5 x 625 degree) covering the entire globe. Besides updating the solar and meteorological data products, this new version features new data products such as photosynthetically active radiation (PAR), more cloud information, estimates of soil temperatures and improved options for long-term climatological data requests. More than 36+ years daily time slices are included in the combined solar and meteorological data sets. However, perhaps the most important innovation of the POWER GIS-enabled Web Services is the provision of hourly solar and meteorological data products beginning in Jan 1, 2001. The hourly values will enable more detailed modeling and crop analysis that incorporates the diurnal variability of these parameters. The new capability is made possible by utilizing both the CERES SYN1Deg and MERRA-2 data products that include parameters at these resolutions. An assessment of both the meteorological and the solar irradiance data are based upon comparisons with globally distributed surface observations. The meteorological observations from the National Center for Environmental Information’s “Integrated Surface Database” as well as the “Global Summary of the Day” (GSOD) data files. The estimates of solar insolation are compared to the Baseline Solar Radiation Network (BSRN) and other high quality surface measurement networks. Results from the uncertainty assessments demonstrates that the NASA’s meteorological and solar irradiance data can represent a viable alternative to surface observations, particularly in data sparse regions of the world.

solar irradiance

An object-oriented, technology-adaptive information model

The primary objective was to develop a computer information system for effectively presenting NASA's technologies to American industries, for appropriate commercialization. To this end a comprehensive information management model, applicable to a wide variety of situations, and immune to computer software/hardware technological gyrations, was developed. The model consists of four main elements: a DATA_STORE, a data PRODUCER/UPDATER_CLIENT and a data PRESENTATION_CLIENT, anchored to a central object-oriented SERVER engine. This server engine facilitates exchanges among the other model elements and safeguards the integrity of the DATA_STORE element. It is designed to support new technologies, as they become available, such as Object Linking and Embedding (OLE), on-demand audio-video data streaming with compression (such as is required for video conferencing), Worldwide Web (WWW) and other information services and browsing, fax-back data requests, presentation of information on CD-ROM, and regular in-house database management, regardless of the data model in place. The four components of this information model interact through a system of intelligent message agents which are customized to specific information exchange needs. This model is at the leading edge of modern information management models. It is independent of technological changes and can be implemented in a variety of ways to meet the specific needs of any communications situation. This summer a partial implementation of the model has been achieved. The structure of the DATA_STORE has been fully specified and successfully tested using Microsoft's FoxPro 2.6 database management system. Data PRODUCER/UPDATER and PRESENTATION architectures have been developed and also successfully implemented in FoxPro; and work has started on a full implementation of the SERVER engine. The model has also been successfully applied to a CD-ROM presentation of NASA's technologies in support of Langley Research Center's TAG efforts.

Anyiwo, Joshua C.

Facilitating the exploitation of ERTS-1 imagery using snow enhancement techniques

The author has identified the following significant results. The applications of ERTS-1 imagery for geological fracture mapping regardless of season has been repeatedly confirmed. The enhancement provided by a differential cover of snow increases the number and length of fracture-lineaments which can be detected with ERTS-1 data and accelerates the fracture mapping process for a variety of practical applications. The geological mapping benefits of the program will be realized in geographic areas where data are most needed - complex glaciated terrain and areas of deep residual soils. ERTS-1 derived fracture-lineament maps which provide detail well in excess of existing geological maps are not available in the Massachusetts-Connecticut area. The large quantity of new data provided by ERTS-1 may accelerate and improve field mapping now in progress in the area. Numerous other user groups have requested data on the techniques. This represents a major change in operating philosophy for groups who to data judged that snow obscured geological detail.

Wobber, F. J.

Information management system breadboard data acquisition and control system.

Description of a breadboard configuration of an advanced information management system based on requirements for high data rates and local and centralized computation for subsystems and experiments to be housed on a space station. The system is to contain a 10-megabit-per-second digital data bus, remote terminals with preprocessor capabilities, and a central multiprocessor. A concept definition is presented for the data acquisition and control system breadboard, and a detailed account is given of the operation of the bus control unit, the bus itself, and the remote acquisition and control unit. The data bus control unit is capable of operating under control of both its own test panel and the test processor. In either mode it is capable of both single- and multiple-message operation in that it can accept a block of data requests or update commands for transmission to the remote acquisition and control unit, which in turn is capable of three levels of data-handling complexity.

Mallary, W. E.

American Meteorological Society (AMS) - The Modern Era Retrospective-Analysis for Research and Applications (MERRA) Data and Accessibility

The AM Short Course on The Modern Era Retrospective-analysis for Research and Applications (MERRA) data and accessibility will be held on January 11, 2009 preceding the 89th Annual Meeting in Phoenix, Arizona. Preliminary programs, registration, hotel, and general information will be posted on the AMS Web site in mid-September 2008. Retrospective-analyses (or reanalyses) have been established as an important tool in weather and climate research over the last decade. As computer power increases, the data assimilation and modeling systems improve and become more advanced, the input data quality increases and so reanalyses become more reliable. In 2008, NASA Global Modeling and Assimilation Office began producing a new reanalysis called the Modem Era Retrospective-analysis for Research and Applications (MERRA). The initial data from the reanalysis has been made available to the community and should be complete through 30 years (1979-present) by Fall of 2009. MERRA has taken advantage of the advancement of computing resources to provide users more data than previously available. The native spatial resolution is nominally 1/2 degrees and the surface two dimensional data are one hourly frequency. In addition to the meteorological analysis data, complete mass, energy and momentum budget data and also stratospheric data are provided. The eventual data holdings will exceed 150Tb. In order to facilitate user accessibility to the data, it will be stored in online hard drives (not tape storage) and available through several portals. Subsetting tools will also be available to allow users to tailor their data requests. The goals of this short course are to provide hands on users of reanalyses instruction on MERRA systems and also interactive experience with the online data and access tools. The course is intended for students and research scientists who will be actively interested in accessing and applying MERRA data in their weather, climate or applications work. The course has three parts. There will be an overview of the MERRA system, the validation of the system and the native data format. Second, Instructors will provide examples of weather and climate data analysis using various software packages (primarily GrADS) as well as the online access tools for subsetting and download, as well as visualization (e.g. Giovanni and Google Earth). This will also include examples on changing the data format to fit user's preferences and also to regrid the data for comparisons to other reanalyses and observational data. Lastly, there will he time set aside for participants to have hands on access to the data and software while interacting with the instructors and other developers. The course convener is Dr. Michael Bosilovich, NASA GSFC Global Modeling and Assimilation Office (GMAO). He will be joined by several GMAO, Goddard Earth Science Data and information Services Center (GES DISC) and Software Integration and Visualization Office (SIVO) staff.

daSilva, Arlindo

Hyperspectral Imager for the Coastal Ocean (HICO): Overview, Operational Updates, and Coastal Ocean Applications

The Hyperspectral Imager for the Coastal Ocean (HICO) was built to measure in‐water properties of complex coastal regions. HICO enables synoptic coverage; 100‐meter spatial resolution for sampling the variability and spatial irregularity of coastal waters; and high spectral resolution to untangle the signals from chlorophyll, colored dissolved organic matter, suspended sediments and varying bottom types. HICO was built by the Naval Research Laboratory, installed on the International Space Station (ISS) in September 2009, and operated for ONR for the first three years. In 2013, NASA assumed sponsorship of operations in order to leverage HICO's ability to address their Earth monitoring mission. This has opened up access of HICO data to the broad research community. Over 8000 images are now available on NASA's Ocean Color Website (http://oceancolor.gsfc.nasa.gov/cgi/browse.pl?sen=hi). Oregon State University's HICO website (http://hico.coas.oregonstate.edu) remains the portal for researchers to request new collections and access their requested data. We will present updates on HICO's calibration and improvements in geolocation and show examples of the use of HICO data to address issues in the coastal ocean and Great Lakes.

Davis, Curtiss O.

An end-to-end command and control concept for NASA data systems

Spacecraft command and control are currently taking on the characteristics of general computer-to-computer interprocess communication. The evolution of these systems during the 1980s will give NASA a true general-purpose end-to-end data request capability for the first time. This concept is presented in outline, with consideration of many of the detailed analyses and subsystem tradeoffs being performed as part of the NEEDS (NASA End-to-End Data System) program.

Desjardins, R.

Shuttle imaging radar-B (SIR-B) data analysis for identifying rainfall event occurrence and intensity

The utility of SIR-B data were evaluated for the detection and measurement of rainfall events, and applications of SIR-B data were developed to the improvement of existing rainfall models. During the SIR-B mission, EarthSat monitored rainfall events occurring within the conterminous United States. The GOES scenes form showed rainfall activity within the conterminous U.S. during the SIR-B mission. Swaths of the actual SIR-B data taken were plotted onto the GOES satellite scenes most closely representing the time of the Shuttle overpass. The JPL provided EarthSat with available SIR-B imagery in paper print form representing the appropriate requested data takes. EarthSat identified the collateral data required for site characterization during subsequent SIR-B contracts with JPL.

Source record

Bundle Data Approach at GES DISC Targeting Natural Hazards

Severe natural phenomena such as hurricane, volcano, blizzard, flood and drought have the potential to cause immeasurable property damages, great socioeconomic impact, and tragic loss of human life. From searching to assessing the Big, i.e., massive and heterogeneous scientific data (particularly, satellite and model products) in order to investigate those natural hazards, it has, however, become a daunting task for Earth scientists and applications researchers, especially during recent decades. The NASA Goddard Earth Sciences Data and Information Service Center (GES DISC) has served Big Earth science data, and the pertinent valuable information and services to the aforementioned users of diverse communities for years. In order to help and guide our users to online readily (i.e., with a minimum effort) acquire their requested data from our enormous resource at GES DISC for studying their targeted hazard event, we have thus initiated a Bundle Data approach in 2014, first targeting the hurricane event topic. We have recently worked on new topics such as volcano and blizzard. The bundle data of a specific hazard event is basically a sophisticated integrated data package consisting of a series of proper datasets containing a group of relevant (knowledge--based) data variables readily accessible to users via a system-prearranged table linking those data variables to the proper datasets (URLs). This online approach has been developed by utilizing a few existing data services such as Mirador as search engine; Giovanni for visualization; and OPeNDAP for data access, etc. The online Data Cookbook site at GES DISC is the current host for the bundle data. We are now also planning on developing an Automated Virtual Collection Framework that shall eventually accommodate the bundle data, as well as further improve our management in Big Data.

GES DISC