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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 37 records · Page 2

Spatial operator algebra framework for multibody system dynamics

The Spatial Operator Algebra framework for the dynamics of general multibody systems is described. The use of a spatial operator-based methodology permits the formulation of the dynamical equations of motion of multibody systems in a concise and systematic way. The dynamical equations of progressively more complex grid multibody systems are developed in an evolutionary manner beginning with a serial chain system, followed by a tree topology system and finally, systems with arbitrary closed loops. Operator factorizations and identities are used to develop novel recursive algorithms for the forward dynamics of systems with closed loops. Extensions required to deal with flexible elements are also discussed.

Rodriguez, G.↗

Young stellar objects detected by IRAS

Fluxes of 453 IRAS point sources selected for proximity to dense gas have been accurately determined by co-adding IRAS data. From this set, 258 sources are detected in all four bands: 12, 25, 60, and 100 microns. As distance from dense molecular material increases, these sources exhibit systematic trends in color and a markedly decreasing luminosity. These trends are broadly consistent with expected evolutionary changes in these stars, with younger objects found closer to dense gas. These data suggest a subtle variation on the criterion for identifying the youngest objects detectable by IRAS, in addition to that of steeply rising spectra: a color temperature which is uniform across all four IRAS bands in the range 40-50 K. These characteristics are used as a criterion to select point sources as candidate very young pre-main-sequence stars.

Clark, Frank O.↗

Spatial Operator Algebra for multibody system dynamics

The Spatial Operator Algebra framework for the dynamics of general multibody systems is described. The use of a spatial operator-based methodology permits the formulation of the dynamical equations of motion of multibody systems in a concise and systematic way. The dynamical equations of progressively more complex grid multibody systems are developed in an evolutionary manner beginning with a serial chain system, followed by a tree topology system and finally, systems with arbitrary closed loops. Operator factorizations and identities are used to develop novel recursive algorithms for the forward dynamics of systems with closed loops. Extensions required to deal with flexible elements are also discussed.

Rodriguez, G.↗

Ultraviolet Imaging Telescope photometry of massive stars - The OB association NGC 206 in M31

The Ultraviolet Imaging Telescope (UIT) obtained UV images of the giant M31 OB association NGC 206. Magnitudes in bands at 1520 and 2490 A were obtained for 30 massive stars, which demonstrate the effectiveness of UIT for photometry of moderately crowded hot stars to V about 21. The UV colors and magnitudes observed for stars in NGC 206 place them in the region of the color magnitude diagram occupied by evolutionary models for 30-60 solar mass stars, after correcting for extinction. The brighter stars are systematically redder than the fainter stars, indicating that they are supergiants of age about 4 Myr, while the fainter, bluer stars are nearer age zero. The relative numbers of probable supergiants measured by us and the number of probable main-sequence O stars measured from optical images are in agreement with the relative lifetimes. Calculated UIT colors are presented for a library of standard star spectra constructed from IUE and ground-based observations.

Hill, Jesse K.↗

The Lyman-Continuum Fluxes and Stellar Parameters of O and Early B-Type Stars

Using the results of the most recent stellar atmosphere models applied to a sample of hot stars, we construct calibrations of effective temperature (T(sub eff)), and gravity (log(sub g)) with a spectral type and luminosity class for Galactic 0-type and early B-type stars. From the model results we also derive an empirical relation between the bolometric correction and T(sub eff) and log g. Using a sample of stars with known distances located in OB associations in the Galaxy and the Large Magellanic Cloud, we derive a new calibration of M(sub v) with spectral class. With these new calibrations and the stellar atmosphere models of Kurucz, we calculate the physical parameters and ionizing photon luminosities in the H(0) and He(0) continua for O and early B-type stars. We find substantial differences between our values of the Lyman- continuum luminosity and those reported in the literature. We also discuss the systematic discrepancy between O-type stellar masses derived from spectroscopic models and those derived from evolutionary tracks. Most likely, the cause of this 'mass discrepancy' lies primarily in the atmospheric models, which are plane parallel and hydrostatic and therefore do not account for an extended atmosphere and the velocity fields in a stellar wind. Finally, we present a new computation of the Lyman-continuum luminosity from 429 known O stars located within 2.5 kpc of the Sun. We find the total ionizing luminosity from this population ((Q(sub 0)(sup T(sub ot))) = 7.0 x 10(exp 51) photons/s) to be 47% larger than that determined using the Lyman continuum values tabulated by Panagia.

Vacca, William D.↗

The cell morphological diversity of Saccharomycotina yeasts

The ~1 200 known species in subphylum Saccharomycotina are a highly diverse clade of unicellular fungi. During its lifecycle, a typical yeast exhibits multiple cell types with various morphologies; these morphologies vary across Saccharomycotina species. Here, we synthesize the evolutionary dimensions of variation in cellular morphology of yeasts across the subphylum, focusing on variation in cell shape, cell size, type of budding, and filament production. Examination of 332 representative species across the subphylum revealed that the most common budding cell shapes are ovoid, spherical, and ellipsoidal, and that their average length and width is 5.6 µm and 3.6 µm, respectively. 58.4% of yeast species examined can produce filamentous cells, and 87.3% of species reproduce asexually by multilateral budding, which does not require utilization of cell polarity for mitosis. Interestingly, ~1.8% of species examined have not been observed to produce budding cells, but rather only produce filaments of septate hyphae and/or pseudohyphae. 76.9% of yeast species examined have sexual cycle descriptions, with most producing one to four ascospores that are most commonly hat-shaped (37.4%). Systematic description of yeast cellular morphological diversity and reconstruction of its evolution promises to enrich our understanding of the evolutionary cell biology of this major fungal lineage.

59 BASIC BIOLOGICAL SCIENCES↗

Boron Abundances in A and B-type Stars

Boron abundances in A- and B-type stars may be a successful way to track evolutionary effects in these hot stars. The light elements - Li, Be, and B - are tracers of exposure to temperatures more moderate than those in which the H-burning CN-cycle operates. Thus, any exposure of surface stellar layers to deeper layers will affect these light element abundances. Li and Be are used in this role in investigations of evolutionary processes in cool stars, but are not observable in hotter stars. An investigation of boron, however, is possible through the B II 1362 A resonance line. We have gathered high resolution spectra from the IUE database of A- and B-type stars near 10 solar mass for which nitrogen abundances have been determined. The B II 1362 A line is blended throughout; the temperature range of this program, requiring spectrum syntheses to recover the boron abundances. For no star could we synthesize the 1362 A region using the meteoritic/solar boron abundance of log e (B) = 2.88; a lower boron abundance was necessary which may reflect evolutionary effects (e.g., mass loss or mixing near the main-sequence), the natal composition of the star forming regions, or a systematic error in the analyses (e.g., non-LTE effects). Regardless of the initial boron abundance, and despite the possibility of non-LTE effects, it seems clear that boron is severely depleted in some stars. It may be that the nitrogen and boron abundances are anticorrelated, as would be expected from mixing between the H-burning and outer stellar layers. If, as we suspect, a residue of boron is present in the A-type supergiants, we may exclude a scenario in which mixing occurs continuously between the surface and the deep layers operating the CN-cycle. Further exploitation of the B II 1362 A line as an indicator of the evolutionary status of A- and B-type stars will require a larger stellar sample to be observed with higher signal-to-noise as attainable with the Hubble Space Telescope.

Lambert, David L.↗

Long-period classical Cepheids - Theory versus observation

New full amplitude models of classical Cepheids having periods longer than 13 days have been calculated, allowing the complete systematics of the observed light and velocity curves of classical Cepheids to be discussed in detail. Assuming that a normal evolutionary mass-luminosity relation is obeyed, the models reproduce such empirical phenomena as the full Hertzsprung progression of light and velocity curves and the gradual shift in phase of the Hertzsprung bump, together with the persistence in phase of the postmaximum shoulder on the light curve. Also reproduced are the retardation of maximum expansion velocity after maximum light, the correlation of light and velocity amplitudes, and the period-amplitude scatter diagram for both the light and the velocity amplitude. The average period predicted for a Cepheid light curve type is noted to be about 40 percent longer than that actually observed.

Carson, T. R.↗

Eco-evolutionary optimality as a means to improve vegetation and land-surface models

Global vegetation and land-surface models embody interdisciplinary scientific understanding of the behaviour of plants and ecosystems, and are indispensable to project the impacts of environmental change on vegetation and the interactions between vegetation and climate. Furthermore, systematic errors and persistently large differences among carbon and water cycle projections by different models highlight the limitations of current process formulations. In this review, focusing on core plant functions in the terrestrial carbon and water cycles, we show how unifying hypotheses derived from eco-evolutionary optimality (EEO) principles can provide novel, parameter-sparse representations of plant and vegetation processes. We present case studies that demonstrate how EEO generates parsimonious representations of core, leaf-level processes that are individually testable and supported by evidence. EEO approaches to photosynthesis and primary production, dark respiration and stomatal behaviour are ripe for implementation in global models. EEO approaches to other important traits, including the leaf economics spectrum and applications of EEO at the community level are active research areas. Independently tested modules emerging from EEO studies could profitably be integrated into modelling frameworks that account for the multiple time scales on which plants and plant communities adjust to environmental change.

59 BASIC BIOLOGICAL SCIENCES↗

On the inconsistency of [C/Fe] abundances and the fractions of carbon-enhanced metal-poor stars among various stellar surveys

Carbon-enhanced metal-poor (CEMP) stars are a unique resource for Galactic archaeology because they probe the properties of the First Stars, early chemical evolution, and binary interactions at very low metallicity. Comparing the fractions and properties of CEMP stars in different Galactic environments can provide us with unique insights into the formation and evolution of the Milky Way halo and its building blocks. In this work, we investigate whether directly comparing fractions of CEMP stars from different literature samples of very metal-poor [Fe/H] < -2.0 stars is valid. We compiled published CEMP fractions and samples of Galactic halo stars from the past 25 years, and find that they are not all consistent with each other. Focusing on giant stars, we find significant differences between various surveys when comparing their trends of [Fe/H] versus [C/Fe] and their distributions of CEMP stars. To test the role of the analysis pipelines for low-resolution spectroscopic samples, we re-analysed giant stars from various surveys with the sspp and ferre pipelines. We found systematic differences in [C/Fe] of ~0.1-0.4 dex, partly independent of degeneracies with the stellar atmospheric parameters. These systematics are likely due to the different pipeline approaches, different assumptions in the employed synthetic grids, and/or the comparison of different evolutionary phases. We conclude that current biases in (the analysis of) very metal-poor samples limit the conclusions one can draw from comparing different surveys. We provide some recommendations and suggestions that will hopefully aid the community to unlock the full potential of CEMP stars for Galactic archaeology.

79 ASTRONOMY AND ASTROPHYSICS↗

Reuse of a Formal Model for Requirements Validation

This paper reports experience from how a project engaged in the process of requirements analysis for evolutionary builds can reuse the formally specified design model produced for a similar, earlier project in the same domain. Two levels of reuse are described here. First, a formally specified generic design model was generated on one project to systematically capture the design commonality in a set of software monitors on board a spacecraft. These monitors periodically check for faults and invoke recovery software when needed. The paper summarizes the use of the design model to validate the software design of the various monitors on that first project. Secondly, the paper describes how the formal design model created for the first project was reused on a second, subsequent project. The model was reused to validate the evolutionary requirements for the second project's software monitors, which were being developed in a series of builds. Some mismatches due to the very different architectures on the two projects suggested changes to make the model more generic. In addition, several advantages to the reuse of the first project's formal model on the second project are reported.

Lutz, Robyn R.↗

Karhunen-Loeve Estimation of the Power Spectrum Parameters from the Angular Distribution of Galaxies in Early Sloan Digital Sky Survey Data

We present measurements of parameters of the three-dimensional power spectrum of galaxy clustering from 222 square degrees of early imaging data in the Sloan Digital Sky Survey (SDSS). The projected galaxy distribution on the sky is expanded over a set of Karhunen-Loeve (KL) eigenfunctions, which optimize the signal-to-noise ratio in our analysis. A maximum likelihood analysis is used to estimate parameters that set the shape and amplitude of the three-dimensional power spectrum of galaxies in the SDSS magnitude-limited sample with r* less than 21. Our best estimates are gamma = 0.188 +/- 0.04 and sigma(sub 8L) = 0.915 +/- 0.06 (statistical errors only), for a flat universe with a cosmological constant. We demonstrate that our measurements contain signal from scales at or beyond the peak of the three-dimensional power spectrum. We discuss how the results scale with systematic uncertainties, like the radial selection function. We find that the central values satisfy the analytically estimated scaling relation. We have also explored the effects of evolutionary corrections, various truncations of the KL basis, seeing, sample size, and limiting magnitude. We find that the impact of most of these uncertainties stay within the 2 sigma uncertainties of our fiducial result.

Szalay, Alexander S.↗

Strontium and neodymium isotopic variations in early Archean gneisses affected by middle to late Archean high-grade metamorphic processes: West Greenland and Labrador

Relicts of continental crust formed more than 3400 Ma ago are preserved fortuitously in most cratons. The cratons provide the most direct information about crust and mantle evolutionary processes during the first billion years of Earth history. In view of their polymetamorphic character, these terrains are commonly affected by subsequent tectonothermal events. Hence, their isotope systematics may be severely disturbed as a result of bulk chemical change or local isotopic homogenization. This leads to equivocal age and source information for different components within these terrains. The Sr and Nd isotopic data are presented for early Archean gneisses from the North Atlantic Craton in west Greenland and northern Labrador which were affected by younger metamorphic events.

Collerson, K. D.↗

Multisubstrate specificity shaped the complex evolution of the aminotransferase family across the tree of life

Aminotransferases (ATs) are an ancient enzyme family that play central roles in core nitrogen metabolism, essential to all organisms. However, many of the AT enzyme functions remain poorly defined, limiting our fundamental understanding of the nitrogen metabolic networks that exist in different organisms. Here, we traced the deep evolutionary history of the AT family by analyzing AT enzymes from 90 species spanning the tree of life (ToL). We found that each organism has maintained a relatively small and constant number of ATs. Mapping the distribution of ATs across the ToL uncovered that many essential AT reactions are carried out by taxon-specific AT enzymes due to wide-spread nonorthologous gene displacements. This complex evolutionary history explains the difficulty of homology-based AT functional prediction. Biochemical characterization of diverse aromatic ATs further revealed their broad substrate specificity, unlike other core metabolic enzymes that evolved to catalyze specific reactions today. Interestingly, however, we found that these AT enzymes that diverged over billion years share common signatures of multisubstrate specificity by employing different nonconserved active site residues. These findings illustrate that AT family enzymes had leveraged their inherent substrate promiscuity to maintain a small yet distinct set of multifunctional AT enzymes in different taxa. This evolutionary history of versatile ATs likely contributed to the establishment of robust and diverse nitrogen metabolic networks that exist throughout the ToL. The study provides a critical foundation to systematically determine diverse AT functions and underlying nitrogen metabolic networks across the ToL.

59 BASIC BIOLOGICAL SCIENCES↗

Quantifying shifts in natural selection on codon usage between protein regions: a population genetics approach

Codon usage bias (CUB), the non-uniform usage of synonymous codons, occurs across all domains of life. Adaptive CUB is hypothesized to result from various selective pressures, including selection for efficient ribosome elongation, accurate translation, mRNA secondary structure, and/or protein folding. Given the critical link between protein folding and protein function, numerous studies have analyzed the relationship between codon usage and protein structure. The results from these studies have often been contradictory, likely reflecting the differing methods used for measuring codon usage and the failure to appropriately control for confounding factors, such as differences in amino acid usage between protein structures and changes in the frequency of different structures with gene expression. Here we take an explicit population genetics approach to quantify codon-specific shifts in natural selection related to protein structure in S. cerevisiae and E. coli. Unlike other metrics of codon usage, our approach explicitly separates the effects of natural selection, scaled by gene expression, and mutation bias while naturally accounting for a region’s amino acid usage. Bayesian model comparisons suggest selection on codon usage varies only slightly between helix, sheet, and coil secondary structures and, similarly, between structured and intrinsically-disordered regions. Similarly, in contrast to previous findings, we find selection on codon usage only varies slightly at the termini of helices in E. coli. Using simulated data, we show this previous work indicating “non-optimal” codons are enriched at the beginning of helices in S. cerevisiae was due to failure to control for various confounding factors (e.g. amino acid biases, gene expression, etc.), and rather than selection to modulate cotranslational folding. Our results reveal a weak relationship between codon usage and protein structure, indicating that differences in selection on codon usage between structures are slight. In addition to the magnitude of differences in selection between protein structures being slight, the observed shifts appear to be idiosyncratic and largely codon-specific rather than systematic reversals in the nature of selection. Overall, our work demonstrates the statistical power and benefits of studying selective shifts on codon usage or other genomic features from an explicitly evolutionary approach. Limitations of this approach and future potential research avenues are discussed.

59 BASIC BIOLOGICAL SCIENCES↗

Generative Representations for Automated Design of Robots

A method of automated design of complex, modular robots involves an evolutionary process in which generative representations of designs are used. The term generative representations as used here signifies, loosely, representations that consist of or include algorithms, computer programs, and the like, wherein encoded designs can reuse elements of their encoding and thereby evolve toward greater complexity. Automated design of robots through synthetic evolutionary processes has already been demonstrated, but it is not clear whether genetically inspired search algorithms can yield designs that are sufficiently complex for practical engineering. The ultimate success of such algorithms as tools for automation of design depends on the scaling properties of representations of designs. A nongenerative representation (one in which each element of the encoded design is used at most once in translating to the design) scales linearly with the number of elements. Search algorithms that use nongenerative representations quickly become intractable (search times vary approximately exponentially with numbers of design elements), and thus are not amenable to scaling to complex designs. Generative representations are compact representations and were devised as means to circumvent the above-mentioned fundamental restriction on scalability. In the present method, a robot is defined by a compact programmatic form (its generative representation) and the evolutionary variation takes place on this form. The evolutionary process is an iterative one, wherein each cycle consists of the following steps: 1. Generative representations are generated in an evolutionary subprocess. 2. Each generative representation is a program that, when compiled, produces an assembly procedure. 3. In a computational simulation, a constructor executes an assembly procedure to generate a robot. 4. A physical-simulation program tests the performance of a simulated constructed robot, evaluating the performance according to a fitness criterion to yield a figure of merit that is fed back into the evolutionary subprocess of the next iteration. In comparison with prior approaches to automated evolutionary design of robots, the use of generative representations offers two advantages: First, a generative representation enables the reuse of components in regular and hierarchical ways and thereby serves a systematic means of creating more complex modules out of simpler ones. Second, the evolved generative representation may capture intrinsic properties of the design problem, so that variations in the representations move through the design space more effectively than do equivalent variations in a nongenerative representation. This method has been demonstrated by using it to design some robots that move, variously, by walking, rolling, or sliding. Some of the robots were built (see figure). Although these robots are very simple, in comparison with robots designed by humans, their structures are more regular, modular, hierarchical, and complex than are those of evolved designs of comparable functionality synthesized by use of nongenerative representations.

Homby, Gregory S.↗

Temperature Scale of Central Stars Planetary Nebulae

The goal of this project was to gain new insight into both the true temperatures of the central stars of planetary nebulae and their evolutionary histories. The temperature scale of the hottest central stars of planetary nebulae is poorly known. The temperature diagnostics available at visible wavelengths are not useful for these very hot stars, or suffer from as-yet unresolved systematic uncertainties. However, the combination of FUSE FUV spectra and HST NUV spectra allows precise temperature determinations by utilizing ionization balances of C III, C IV and O V, O VI lines. The sample comprises hot hydrogen-rich central stars covering the hottest phase of post-AGB evolution (T_eff greater than 70,000K). The spectra were analyzed with fully metal line blanketed NLTE model atmospheres in order to determine T_eff, surface gravity, and chemical composition. In addition to the temperature scale, the spectra help address the question of metal abundances at the surface of these stars. Depending on the particular star, the metal abundances are either dominated by ongoing diffusion processes or they originate from dredge-up phases during previous AGB evolution. The sample was selected so as to include objects that were expected to exhibit both processes, in order to assess their relative importance and to gain insight into the evolutionary history of the stars. The objects that show qualitatively a metal abundance pattern which points at dredge-up phases, can be used to quantitatively check against abundance predictions of stellar evolution theory. The other objects, where gravitational diffusion and radiative acceleration determine the photospheric metal abundances, will be used to check our NLTE models which for the first time include diffusion processes self-consistently.

Kruk, Jeffry↗

Iterative pass optimization of sequence data

The problem of determining the minimum-cost hypothetical ancestral sequences for a given cladogram is known to be NP-complete. This "tree alignment" problem has motivated the considerable effort placed in multiple sequence alignment procedures. Wheeler in 1996 proposed a heuristic method, direct optimization, to calculate cladogram costs without the intervention of multiple sequence alignment. This method, though more efficient in time and more effective in cladogram length than many alignment-based procedures, greedily optimizes nodes based on descendent information only. In their proposal of an exact multiple alignment solution, Sankoff et al. in 1976 described a heuristic procedure--the iterative improvement method--to create alignments at internal nodes by solving a series of median problems. The combination of a three-sequence direct optimization with iterative improvement and a branch-length-based cladogram cost procedure, provides an algorithm that frequently results in superior (i.e., lower) cladogram costs. This iterative pass optimization is both computation and memory intensive, but economies can be made to reduce this burden. An example in arthropod systematics is discussed. c2003 The Willi Hennig Society. Published by Elsevier Science (USA). All rights reserved.

NASA Discipline Evolutionary Biology↗