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Generative Representations for Automated Design of Robots

A method of automated design of complex, modular robots involves an evolutionary process in which generative representations of designs are used. The term generative representations as used here signifies, loosely, representations that consist of or include algorithms, computer programs, and the like, wherein encoded designs can reuse elements of their encoding and thereby evolve toward greater complexity. Automated design of robots through synthetic evolutionary processes has already been demonstrated, but it is not clear whether genetically inspired search algorithms can yield designs that are sufficiently complex for practical engineering. The ultimate success of such algorithms as tools for automation of design depends on the scaling properties of representations of designs. A nongenerative representation (one in which each element of the encoded design is used at most once in translating to the design) scales linearly with the number of elements. Search algorithms that use nongenerative representations quickly become intractable (search times vary approximately exponentially with numbers of design elements), and thus are not amenable to scaling to complex designs. Generative representations are compact representations and were devised as means to circumvent the above-mentioned fundamental restriction on scalability. In the present method, a robot is defined by a compact programmatic form (its generative representation) and the evolutionary variation takes place on this form. The evolutionary process is an iterative one, wherein each cycle consists of the following steps: 1. Generative representations are generated in an evolutionary subprocess. 2. Each generative representation is a program that, when compiled, produces an assembly procedure. 3. In a computational simulation, a constructor executes an assembly procedure to generate a robot. 4. A physical-simulation program tests the performance of a simulated constructed robot, evaluating the performance according to a fitness criterion to yield a figure of merit that is fed back into the evolutionary subprocess of the next iteration. In comparison with prior approaches to automated evolutionary design of robots, the use of generative representations offers two advantages: First, a generative representation enables the reuse of components in regular and hierarchical ways and thereby serves a systematic means of creating more complex modules out of simpler ones. Second, the evolved generative representation may capture intrinsic properties of the design problem, so that variations in the representations move through the design space more effectively than do equivalent variations in a nongenerative representation. This method has been demonstrated by using it to design some robots that move, variously, by walking, rolling, or sliding. Some of the robots were built (see figure). Although these robots are very simple, in comparison with robots designed by humans, their structures are more regular, modular, hierarchical, and complex than are those of evolved designs of comparable functionality synthesized by use of nongenerative representations.

Homby, Gregory S.↗

Temperature Scale of Central Stars Planetary Nebulae

The goal of this project was to gain new insight into both the true temperatures of the central stars of planetary nebulae and their evolutionary histories. The temperature scale of the hottest central stars of planetary nebulae is poorly known. The temperature diagnostics available at visible wavelengths are not useful for these very hot stars, or suffer from as-yet unresolved systematic uncertainties. However, the combination of FUSE FUV spectra and HST NUV spectra allows precise temperature determinations by utilizing ionization balances of C III, C IV and O V, O VI lines. The sample comprises hot hydrogen-rich central stars covering the hottest phase of post-AGB evolution (T_eff greater than 70,000K). The spectra were analyzed with fully metal line blanketed NLTE model atmospheres in order to determine T_eff, surface gravity, and chemical composition. In addition to the temperature scale, the spectra help address the question of metal abundances at the surface of these stars. Depending on the particular star, the metal abundances are either dominated by ongoing diffusion processes or they originate from dredge-up phases during previous AGB evolution. The sample was selected so as to include objects that were expected to exhibit both processes, in order to assess their relative importance and to gain insight into the evolutionary history of the stars. The objects that show qualitatively a metal abundance pattern which points at dredge-up phases, can be used to quantitatively check against abundance predictions of stellar evolution theory. The other objects, where gravitational diffusion and radiative acceleration determine the photospheric metal abundances, will be used to check our NLTE models which for the first time include diffusion processes self-consistently.

Kruk, Jeffry↗

Iterative pass optimization of sequence data

The problem of determining the minimum-cost hypothetical ancestral sequences for a given cladogram is known to be NP-complete. This "tree alignment" problem has motivated the considerable effort placed in multiple sequence alignment procedures. Wheeler in 1996 proposed a heuristic method, direct optimization, to calculate cladogram costs without the intervention of multiple sequence alignment. This method, though more efficient in time and more effective in cladogram length than many alignment-based procedures, greedily optimizes nodes based on descendent information only. In their proposal of an exact multiple alignment solution, Sankoff et al. in 1976 described a heuristic procedure--the iterative improvement method--to create alignments at internal nodes by solving a series of median problems. The combination of a three-sequence direct optimization with iterative improvement and a branch-length-based cladogram cost procedure, provides an algorithm that frequently results in superior (i.e., lower) cladogram costs. This iterative pass optimization is both computation and memory intensive, but economies can be made to reduce this burden. An example in arthropod systematics is discussed. c2003 The Willi Hennig Society. Published by Elsevier Science (USA). All rights reserved.

NASA Discipline Evolutionary Biology↗

Control of Flexible Structures (COFS) Flight Experiment Program

The Control of Flexible Structures (COFS) Flight Experiment Program consists of a series of four Shuttle-attached experiments specifically designed to systematically evaluate algorithms and techniques for on-orbit systems identification and flexible body control of large flexible structures, and as such, develops the enabling technologies for future NASA missions such as the evolutionary Space Station and large orbital antennas. These flight experiments are conducted on 1-year centers starting in 1989. This paper presents a description of the test article for the first two flights (COFS-I) and a discussion of the strategy for conducting the various experiments. A guest investigator program provides the opportunity for the research community to participate in the structures/controls research associated with the multi-flight COFS Program.

Fontana, A.↗

Physical Properties of Cometary Nucleus Candidates

In this proposal we aim to study the physical properties of the Centaurs and the dead comets, these being the precursors to, and the remnants from, the active cometary nuclei. The nuclei themselves are very difficult to study, because of the contaminating effects of near-nucleus coma. Systematic investigation of the nuclei both before they enter the zone of strong sublimation and after they have depleted their near-surface volatiles should neatly bracket the properties of these objects, revealing evolutionary effects.

Jewitt, David↗

Are wide pre-main-sequence binaries coeval?

We have observed a sample of 39 wide (projected separations 400-6000 AU) pre-main-sequence binary pairs spectroscopically and with optical and near-infrared images. The observations enable us to place 26 of the pairs in an H-R diagram and to determine masses and ages of the primary and secondary according to three sets of pre-main-sequence evolutionary tracks. In two-thirds of the cases the primary and secondary lie along the same isochrone to within the observational errors. However, real age differences appear for about one-third of our sample pairs-there is no set of nonintersecting theoretical isochrones that can make the primary and secondary have the same age for all pairs in our sample. In the cases where there are significant age differences between the component stars, the less massive star is usually younger than the more massive star. There is no correlation of the age differences with the presence or absence of accretion disks around the young stars. Hence, while disk accretion may affect the evolutionary tracks of the pre-main-sequence stars H-R diagram, we see no clear evidence of this effect among the pairs in our sample. The age differences also do not depend systematically on the apparent separation, the mass ratio, or the ages of stars.

Hartigan, Patrick↗

Gene Fusion: A Genome Wide Survey

As a well known fact, organisms form larger and complex multimodular (composite or chimeric) and mostly multi-functional proteins through gene fusion of two or more individual genes which have independent evolution histories and functions. We call each of these components a module. The existence of multimodular proteins may improves the efficiency in gene regulation and in cellular functions, and thus may give the host organism advantages in adaptation to environments. Analysis of all gene fusions in present-day organisms should allow us to examine the patterns of gene fusion in context with cellular functions, to trace back the evolution processes from the ancient smaller and uni-functional proteins to the present-day larger and complex multi-functional proteins, and to estimate the minimal number of ancestor proteins that existed in the last common ancestor for all life on earth. Although many multimodular proteins have been experimentally known, identification of gene fusion events systematically at genome scale had not been possible until recently when large number of completed genome sequences have been becoming available. In addition, technical difficulties for such analysis also exist due to the complexity of this biological and evolutionary process. We report from this study a new strategy to computationally identify multimodular proteins using completed genome sequences and the results surveyed from 22 organisms with the data from over 40 organisms to be presented during the meeting. Additional information is contained in the original extended abstract.

Liang, Ping↗

Lumping and splitting: Toward a classification of mineral natural kinds

How does one best subdivide nature into kinds? All classification systems require rules for lumping similar objects into the same category, while splitting differing objects into separate categories. Mineralogical classification systems are no exception. Our work in placing mineral species within their evolutionary contexts necessitates this lumping and splitting because we classify “mineral natural kinds” based on unique combinations of formational environments and continuous temperature-pressure-composition phase space. Consequently, we lump two minerals into a single natural kind only if they: (1) are part of a continuous solid solution; (2) are isostructural or members of a homologous series; and (3) form by the same process. A systematic survey based on these criteria suggests that 2310 (~41%) of 5659 IMA-approved mineral species can be lumped with one or more other mineral species, corresponding to 667 “root mineral kinds,” of which 353 lump pairs of mineral species, while 129 lump three species. Eight mineral groups, including cancrinite, eudialyte, hornblende, jahnsite, labuntsovite, satorite, tetradymite, and tourmaline, are represented by 20 or more lumped IMA-approved mineral species. A list of 5659 IMA-approved mineral species corresponds to 4016 root mineral kinds according to these lumping criteria. The evolutionary system of mineral classification assigns an IMA-approved mineral species to two or more mineral natural kinds under either of two splitting criteria: (1) if it forms in two or more distinct paragenetic environments, or (2) if cluster analysis of the attributes of numerous specimens reveals more than one discrete combination of chemical and physical attributes. A total of 2310 IMA-approved species are known to form by two or more paragenetic processes and thus correspond to multiple mineral natural kinds; however, adequate data resources are not yet in hand to perform cluster analysis on more than a handful of mineral species. We find that 1623 IMA-approved species (~29%) correspond exactly to mineral natural kinds; i.e., they are known from only one paragenetic environment and are not lumped with another species in our evolutionary classification. Greater complexity is associated with 587 IMA-approved species that are both lumped with one or more other species and occur in two or more paragenetic environments. In these instances, identification of mineral natural kinds may involve both lumping and splitting of the corresponding IMA-approved species on the basis of multiple criteria. Based on the numbers of root mineral kinds, their known varied modes of formation, and predictions of minerals that occur on Earth but are as yet undiscovered and described, we estimate that Earth holds more than 10000 mineral natural kinds.

Philosophy of mineralogy↗

The AstroBiology Explorer (ABE) MIDEX Mission Concept: Using Infrared Spectroscopy to Identify Organic Molecules in Space

One of the principal means by which organic compounds are detected and identified in space is by infrared spectroscopy. Past IR studies (telescopic and laboratory) have demonstrated that much of the carbon in the interstellar medium (ISM) is in complex organic species of a variety of types, but the distribution, abundance, and evolutionary relationships of these materials are not well understood. The Astrobiology Explorer (ABE) is a MIDEAST mission concept designed to conduct IR spectroscopic observations to detect and identify these materials to address outstanding important problems in astrobiology, astrochemistry, and astrophysics. Systematic studies include the observation of planetary nebulae and stellar outflows, protostellar objects, Solar System Objects, and galaxies, and multiple lines of sight through dense molecular clouds and the diffuse ISM. ABE will also search for evidence of D enrichment in complex molecules in all these environments. The mission is currently under study at NASA's Ames Research Center in collaboration with Ball Aerospace and Technologies Corp. ABE is a cryogenically-cooled 60 cm diameter space telescope equipped with 3 cryogenic cross-dispersed spectrographs that share a single common slit. The 3 spectrometers each measure single spectral octaves (2.5-5, 5-10, 10-20 microns) and together cover the entire 2.5 - 20 micron region simultaneously. The spectrometers use state-of-the-art 1024x1024 pixel detectors, with a single InSb array for the 2.5-5 micron region and two Si:As arrays for the 5-10 and 10-20 micron regions. The spectral resolution is wavelength dependent but is greater than 2000 across the entire spectral range. ABE would operate in a heliocentric, Earth drift-away orbit and is designed to take maximum advantage of this environment for cooling, thermal stability, and mission lifetime. ABE would have a core science mission lasting approximately 1.5 years.

Sandford, Scott A.↗

Cation ordering in orthopyroxenes and cooling rates of meteorites: Low temperature cooling rates of Estherville, Bondoc and Shaw

The cooling rates of meteorites provide important constraints on the size of their parent bodies, and their accretionary and evolutionary histories. However, the cooling rates obtained so far from the commonly used metallographic, radiometric and fission-track methods have been sometimes quite controversial, such as in the case of the mesosiderites and the meteorite Shaw. We have undertaken a systematic study of the cooling rates of meteorites using a different approach, which involves single crystal x-ray determination of Fe(2+)-Mg ordering in orthopyroxenes (OP(x)) in meteorites, subject to bulk compositional constraints, and numerical simulation of the evolution of the ordering state as a function of cooling rate, within the framework of the thermodynamic and kinetic principles governing cation ordering. We report the results obtained for OP(x) crystals from Shaw and two mesosiderites, Estherville and Bondoc.

Ganguly, J.↗

Probing the Evolutionary History of Comets: an Investigation of the Hypervolatiles CO, CH4, and C2H6 in the Jupiter-Family Comet 21P/Giacobini–Zinner

Understanding the cosmogonic record encoded in the parent volatiles stored in cometary nuclei requires investigating whether evolution (thermal or otherwise) has modified the composition of short-period comets during successive perihelion passages. As the most volatile molecules systematically observed in comets, the abundances of CO, CH4, and C2H6 in short-period comets may serve to elucidate the interplay between natal conditions and post-formative evolution in setting present-day composition, yet secure measurements of CO and CH4 in Jupiter-family comets (JFCs) are especially sparse. The highly favorable 2018 apparition of JFC 21P/Giacobini–Zinner enabled a sensitive search for these "hypervolatiles" in a prototypical carbon-chain depleted comet. We observed 21P/Giacobini–Zinner with the iSHELL spectrograph at the NASA Infrared Telescope Facility on four pre-perihelion dates, two dates near-perihelion, and one post-perihelion date. We obtained detections of CO, CH4, and C2H6 simultaneously with H2O on multiple dates. We present rotational temperatures, production rates, and mixing ratios. Combined with previous work, our results may indicate that the hypervolatile coma composition of 21P/Giacobini–Zinner was variable across apparitions as well as within a particular perihelion passage, yet the spread in these measurements is a relatively small fraction of the variation in each molecule from comet to comet. We discuss the implications of our measured hypervolatile content of 21P/Giacobini–Zinner for the evolution of JFCs, and place our results in the context of findings from the Rosetta mission and ground-based studies of comets.

Roth, Nathan X.↗

Biocene 2018 - Welcome to the Period of New Life

Biocene is the period of new life. When our descendants look back at this period in time, they will see evidence, in the geologic and electronic record, of anthropic climate change, growing population, and scarcity of resources. But they will also see the rebirth of human ingenuity as we overcame the challenges that faced us through nature-inspired exploration. The Periodic Table of Life (PeTaL) is a proposed tool and open source framework that uses artificial intelligence to aid in the systematic inquiry of biology for its application to human systems. This presentation defines the PeTaL concept and workflow. Biomimicry, biophysics, biomimetics, bionics and numerous other terms refer to the use of biology and biological principles to inform practices in other disciplines. For the most part, the domain of inquiry in these fields have been confined to extant biological models with the proponents of biomimicry often citing the evolutionary success of extant organisms relative to extinct ones. The primary objective of this paper is to expand the domain of inquiry for human processes that seek to model those that are, were or could be found in nature with examples that relate to the field of aerospace and to spur development of tools that can work together to accelerate the use of artificial intelligence in problem solving. Specifically specialized fields such as paleomimesis, anthropomimesis and physioteleology are proposed in conjunction with artificial evolution. Blockchain technology may be vital in allowing open source design tools such as PeTaL to democratize design and yet protect intellectual property. The overarching philosophy outlined here can be thought of as physiomimetics, a holistic and systematic way of learning from natural history. The backbone of PeTaL integrates an unstructured database with an ontological model consisting of function, morphology, environment, state of matter and ecosystem. Tools include text classification, thesaurus, data visualization, and analysis. Applications of PeTaL include guiding human space exploration, understanding human and geological history, and discovering new or extinct life.

Biocene↗

A photometric study of the Orion OB 1 association. 3: Subgroup analyses

The four principal subgroups of the association were examined in detail using individual distances and reddening values determined for their B type members. Subgroup 1a appeared not to show a spread in age nor did it show a systematic distance increase with right ascension when fainter members were considered. An eastwardly increase in distance was found for subgroup 1b but the reddening law for the east Belt appeared normal. Small subclusterings in the vicinity of the Orion Nebula appeared not to differ in the evolutionary state but their ages were considerably greater than those of stars in the nebulae and its associated cluster.

Warren, W. H., Jr.↗

X-ray observations of Be stars

Be star binaries with neutron star companions are shown to constitute a major class of X-ray sources. Some general observational and interpretive techniques of X-ray astronomy are reviewed. Data for 12 Be/X-ray binary systems are summarized. The Be/X-ray binaries are found to be systematically wider systems, with lower-mass primaries, and with significantly more transient behavior than the 'standard' massive X-ray binaries such as Cen X-3 and SMC X-1. The difference between the two types of X-ray binaries is explained in the context of slightly different evolutionary scenarios for the progenitor binaries. The 'standard' massive X-ray binaries result from wind-mass-loss dominated evolution of very massive close binaries, while Be/X-ray binaries probably result from mass-transfer dominated evolution of systems with primary masses less than approximately 20 solar masses. The implications of the X-ray observations of Be/X-ray binaries for Be stars in general are discussed.

Rappaport, S.↗

Is there a classical Hyades lithium problem?

The distribution of surface lithium abundances in the Hyades cluster, as a function of effective temperature, has resisted a satisfactory theoretical explanation for more than two decades. Trends in the historically recomputed values of stellar opacity have stimulated a systematic investigation of the effects of larger opacities on lithium depletion during the premain-sequence evolution of low-mass stars. It is shown that the calculated depletion depends quite strongly on the opacities employed, and that both surface and interior opacities play an important role. By performing standard evolutionary calculations with parameterized increments in the opacities, the observed Hyades Li and T(eff) relation for G and K dwarfs have been determined in a manner consistent with the other observational constraints. The solution presented herein requires an increase in interior opacities at about 4 million K over older values by approximately less than 37 percent. Such a change is not incompatible with the historical trends in opacity computations and suggests that the resolution of this problem lies solely in the opacities, without recourse to other physical mechanisms such as turbulent diffusion or 'extra mixing'.

Swenson, Fritz J.↗

Periodic orbits of the general three-body problem for the sun-Jupiter-Saturn system

Two families of symmetric periodic orbits of the planar, general, three-body problem are presented. The masses of the three bodies include ratios equal to the sun-Jupiter-Saturn system and the periods of the orbits of Jupiter and Saturn are in a 2:5 resonance. The (linear) stability of the orbits are studied in relation to eccentricity and mass variations. The generation of the two families of periodic orbits follows a systematic approach and employs (numerical) continuation from periodic orbits of the first and second kind in the circular restricted problem to the elliptic restricted problem and from the circular and elliptic problems to the general problem through bifurcation phenomena relating the three dynamical systems. The approach also provides insight into the evolutionary process of periodic orbits continued from the restricted problems to the general problem.

Kwok, J. H.↗

30 Doradus - Ultraviolet and optical stellar photometry

Ultraviolet Imaging Telescope (UIT) UV magnitudes in four bands, together with optical B magnitudes, are presented for up to 314 early-type stars located in a 9.7 x 9.7 arcmin field centered on R136. The magnitudes have an rms uncertainty estimated at 0.10 mag from a comparison between the UIT magnitudes and the IUE spectra. Spectral types and E(B-V) color excesses are estimated. The mean color excesses following the two extinction curves agree well with the predictions of the two-component extinction model of Fitzpatrick and Savage (1984). However, the degree of nebular extinction is found to vary systematically by large amounts over the 30 Dor field. The minimum of nebular extinction in the central parts of the nebula suggests that dust has been expelled from this region by stellar winds. It is suggested that the form of the UV extinction curve can be understood as a consequence of the evolutionary state of the stellar population responsible for making the dust grains.

Hill, Jesse K.↗

Modern Microbial Ecosystems are a Key to Understanding Our Biosphere's Early Evolution and its Contributions To The Atmosphere and Rock Record

The survival of our early biosphere depended upon efficient coordination anion- diverse microbial populations. Microbial mats exhibit a 3.46-billion-year fossil record, thus they are the oldest known ecosystems. Photosynthetic microbial mats were key because, today, sunlight powers more than 99 percent of global primary productivity. Thus photosynthetic ecosystems have affected the atmosphere profoundly and have created the most pervasive, easily-detected fossils. Photosynthetic biospheres elsewhere will be most detectible via telescopes or spacecraft. As a part of the Astrobiology Institute, our Ames Microbial Ecosystems group examines the roles played by ecological processes in the early evolution of our biosphere, as recorded in geologic fossils and in the macromolecules of living cells: (1) We are defining the microbial mat microenvironment, which was an important milieu for early evolution. (2) We are comparing mats in contrasting environments to discern strategies of adaptation and diversification, traits that were key for long-term survival. (3) We have selected sites that mimic key environmental attributes of early Earth and thereby focus upon evolutionary adaptations to long-term changes in the global environment. (4) Our studies of gas exchange contribute to better estimates of biogenic gases in Earth's early atmosphere. This group therefore directly addresses the question: How have the Earth and its biosphere influenced each other over time Our studies strengthen the systematics for interpreting the microbial fossil record and thereby enhance astrobiological studies of martian samples. Our models of biogenic gas emissions will enhance models of atmospheres that might be detected on inhabited extrasolar planets. This work therefore also addresses the question: How can other biospheres be recogniZed" Our choice of field sites helps us explore Earth's evolving early environment. For example, modern mats that occupy thermal springs and certain freshwater environments experience conditions such as low O2 and sulfate and high inorganic carbon and sulfide levels that resemble those of ancient marine environments. Later in history, both biologically-induced carbonate precipitation and the trapping and binding of suspended grains of carbonate became a dominant mechanism for carbonate deposition. Modern marine carbonate platforms and alkaline offer good examples of microbiologically-induced calcification. Both marine platforms and solar salterns illustrate microbially-driven trapping and binding. We are also exploring the effects of water composition upon the exchange of biogenic gases with the atmosphere.

DesMarais, David J.↗