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At least 37 records · Page 2

Enhanced Co-Expression Extrapolation (COXEN) Gene Selection Method for Building Anti-Cancer Drug Response Prediction Models

The co-expression extrapolation (COXEN) method has been successfully used in multiple studies to select genes for predicting the response of tumor cells to a specific drug treatment. Here, we enhance the COXEN method to select genes that are predictive of the efficacies of multiple drugs for building general drug response prediction models that are not specific to a particular drug. The enhanced COXEN method first ranks the genes according to their prediction power for each individual drug and then takes a union of top predictive genes of all the drugs, among which the algorithm further selects genes whose co-expression patterns are well preserved between cancer cases for building prediction models. We apply the proposed method on benchmark in vitro drug screening datasets and compare the performance of prediction models built based on the genes selected by the enhanced COXEN method to that of models built on genes selected by the original COXEN method and randomly picked genes. Models built with the enhanced COXEN method always present a statistically significantly improved prediction performance (adjusted p-value ≤ 0.05). Our results demonstrate the enhanced COXEN method can dramatically increase the power of gene expression data for predicting drug response.

60 APPLIED LIFE SCIENCES↗

Extrapolation of Type Ia Supernova Spectra into the Near-infrared Using Principal Component Analysis

Abstract We present a method of extrapolating the spectroscopic behavior of Type Ia supernovae (SNe Ia) in the near-infrared (NIR) wavelength regime up to 2.30 μ m using optical spectroscopy. Such a process is useful for accurately estimating K-corrections and other photometric quantities of SNe Ia in the NIR. A principal component analysis is performed on data consisting of Carnegie Supernova Project I & II optical and NIR FIRE spectra to produce models capable of making these extrapolations. This method differs from previous spectral template methods by not parameterizing models strictly by photometric light-curve properties of SNe Ia, allowing for more flexibility of the resulting extrapolated NIR flux. A difference of around −3.1% to −2.7% in the total integrated NIR flux between these extrapolations and the observations is seen here for most test cases including Branch core-normal and shallow-silicon subtypes. However, larger deviations from the observation are found for other tests, likely due to the limited high-velocity and broad-line SNe Ia in the training sample. Maximum-light principal components are shown to allow for spectroscopic predictions of the color-stretch light-curve parameter, s BV , within approximately ±0.1 units of the value measured with photometry. We also show these results compare well with NIR templates, although in most cases the templates are marginally more fitting to observations, illustrating a need for more concurrent optical+NIR spectroscopic observations to truly understand the diversity of SNe Ia in the NIR.

Astronomy & Astrophysics↗

The importance of round-robin validation when assessing machine-learning-based vertical extrapolation of wind speeds

The extrapolation of wind speeds measured at a meteorological mast to wind turbine rotor heights is a key component in a bankable wind farm energy assessment and a significant source of uncertainty. Industry-standard methods for extrapolation include the power-law and logarithmic profiles. The emergence of machine-learning applications in wind energy has led to several studies demonstrating substantial improvements in vertical extrapolation accuracy in machine-learning methods over these conventional power-law and logarithmic profile methods. In all cases, these studies assess relative model performance at a measurement site where, critically, the machine-learning algorithm requires knowledge of the rotor-height wind speeds in order to train the model. This prior knowledge provides fundamental advantages to the site-specific machine-learning model over the power-law and log profiles, which, by contrast, are not highly tuned to rotor-height measurements but rather can generalize to any site. Furthermore, there is no practical benefit in applying a machine-learning model at a site where winds at the heights relevant for wind energy production are known; rather, its performance at nearby locations (i.e., across a wind farm site) without rotor-height measurements is of most practical interest. To more fairly and practically compare machine-learning-based extrapolation to standard approaches, we implemented a round-robin extrapolation model comparison, in which a random-forest machine-learning model is trained and evaluated at different sites and then compared against the power-law and logarithmic profiles. We consider 20 months of lidar and sonic anemometer data collected at four sites between 50 and 100 km apart in the central United States. We find that the random forest outperforms the standard extrapolation approaches, especially when incorporating surface measurements as inputs to include the influence of atmospheric stability. When compared at a single site (the traditional comparison approach), the machine-learning improvement in mean absolute error was 28 % and 23 % over the power-law and logarithmic profiles, respectively. Using the round-robin approach proposed here, this improvement drops to 20 % and 14 %, respectively. These latter values better represent practical model performance, and we conclude that round-robin validation should be the standard for machine-learning-based wind speed extrapolation methods.

17 WIND ENERGY↗

Methods for Measuring and Computing the Reference Temperature in Newton’s Law of Cooling for External Flows

Newton’s law of cooling requires a reference temperature (𝑇 𝑟𝑒𝑓 ) to define the heat-transfer coefficient (ℎ). For external flows with multiple temperatures in the freestream, obtaining 𝑇 𝑟𝑒𝑓 is a challenge. One widely used method, referred to as the adiabatic-wall (AW) method, obtains 𝑇 𝑟𝑒𝑓 by requiring the surface of the solid exposed to convective heat transfer to be adiabatic. Another widely used method, referred to as the linear-extrapolation (LE) method, obtains 𝑇 𝑟𝑒𝑓 by measuring/computing the heat flux ($𝑞^{′′}_𝑠$) on the solid surface at two different surface temperatures (𝑇 𝑠 ) and then linearly extrapolating to $𝑞^{′′}_𝑠$ = 0. A third recently developed method, referred to as the state-space (SS) method, obtains 𝑇 𝑟𝑒𝑓 by probing the temperature space between the highest and lowest in the flow to account for the effects of 𝑇 𝑠 or $𝑞^{′′}_𝑠$ on 𝑇 𝑟𝑒𝑓 . This study examines the foundation and accuracy of these methods via a test problem involving film cooling of a flat plate where $𝑞^{′′}_𝑠$ switches signs on the plate’s surface. Results obtained show that only the SS method could guarantee a unique and physically meaningful 𝑇 𝑟𝑒𝑓 where 𝑇 𝑠 =𝑇 𝑟𝑒𝑓 on a nonadiabatic surface $𝑞^{′′}_𝑠$ = 0. The AW and LE methods both assume 𝑇 𝑟𝑒𝑓 to be independent of 𝑇 𝑠 , which the SS method shows to be incorrect. Though this study also showed the adiabatic-wall temperature, 𝑇 𝐴𝑊 , to be a good approximation of 𝑇 𝑟𝑒𝑓 (<10% relative error), huge errors can occur in ℎ about the solid surface where |𝑇 𝑠 −𝑇 𝐴𝑊 | is near zero because where 𝑇 𝑠 =𝑇 𝐴𝑊 , $𝑞^{′′}_𝑠$ ≠ 0.

Newton's law of cooling↗

Support of the Development of EPP Plus SMT Design Method (FY2020 Test Results)

Experiments in support of the development of the integrated Elastic–Perfectly Plastic (EPP) analysis and Simplified Model Test (SMT) design methodology continued in FY 2020. The previously developed single-bar SMT (SBSMT) technique was successfully extended to tubular shaped Alloy 617 specimens for evaluation of the effect of primary pressure load on SMT creep-fatigue (CF) properties at 950°C. A series of pressurized SMT tests were performed with various elastic follow-up factors and strain ranges. The results show that the primary pressure load reduces the SMT CF cycles. The reduction of SMT CF life due to primary load was found to be dependent on strain ranges, elastic follow up and test temperatures. These results are crucial for verification of the EPP strain range analysis in the EPP+SMT evaluation procedure. Additionally, hold time effect on the SMT CF life cycles is a determining factor for generating the EPP+SMT CF design curves. Lack of test data in the high cycle and low strain range region results in major uncertainty in developing the design curves. In FY2020, experiments were designed, and testing started on Alloy 617 at 950°C to fill the gap in experimental data. The on-going CF and additional SMT CF with elastic follow-up at low strain ranges will generate the information needed to verify the methods for extrapolation to long hold time and finalize the EPP+SMT design method.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

An initial framework for the rapid qualification of long-term creep rupture strength via microstructural modeling

This report describes the development and testing of a new method for extrapolating short-term creep rupture test data to predict long-term rupture strength. The goal of this work is to reduce the time required to qualify new materials for nuclear service by reducing the lead time required for dedicated, long-term material testing to establish key long-term material properties. The new approach described here uses a physics-based model to predict the long-term creep rupture strength of 316H stainless steel using only short-term test data. The key idea is to use Bayesian inference to find the statistical distribution of the model parameters that best explain the short-term rupture data. Because the model is physics-based these parameters are all microstructural quantities that can be measured through detailed material characterization experiments. The Bayesian prior distributions provide a means for incorporating this characterization data into the final model to improve the accuracy of the long-term model predictions. However, where such data is not available the process still produces an accurate model based on an uniformed prior. Our hypothesis is that this approach more accurately extrapolates the short-term test data when compared to current, empirical methods. The report proves this hypothesis using actual long-term rupture data available for 316H, including tests with rupture times greater than 200,000 hours. The general approach developed here could be applied to other materials and other time-dependent material properties. Applying this new technique to develop long-term qualified material properties, potentially in conjunction with other accelerated qualification approaches like staggered qualification test programs, could greatly reduce the time required to qualify new materials for nuclear service.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Preliminary description of a new creep-fatigue design method that reduces over conservatism and simplifies the high temperature design process

The report provides the initial description of a new creep-fatigue design method for structural components in high temperature nuclear service. The new method is based on an integrated elastic-perfectly plastic (EPP) analysis and Simplified Model Test (SMT) approach that reduces over conservatism, improves the treatment of elastic follow up, and simplifies the design procedure, when compared with the current creep-fatigue design methods in ASME Boiler and Pressure Vessel Code. Developing the design charts for the EPP-SMT design method requires extrapolating SMT test data as a function of hold time and follow up factor. The report develops the preliminary design charts for Alloy 617 at temperatures between 800°C and 950°C by combining two extrapolation approaches developed in a previous work. The report also presents a comparative analysis between the EPP-SMT design method and the current ASME creep-fatigue design methods by evaluating design life of two sample geometries under different loading conditions. Results from the comparative analysis verify the EPP-SMT design charts but suggest the requirement of additional test data in the low strain range regime for improving the extrapolation procedure that will further reduce the over conservatism in the creep-fatigue damage evaluation. The report also concludes that the EPP-SMT design procedure can account for effect of primary load on creep-fatigue life by using a fixed, bounding value of follow up in constructing the design charts. The conclusions to this report describe the future work required to complete this new design method so it can be codified through a nuclear Code Case.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Resolution of Tolerance Variations

The connector/adapter assembly (CAA) is one component of a higher-level assembly. A simplified representation of the CAA is illustrated in Figure 1. The location of each CAA is required to meet a specific positional requirement. Several CAAs have been measured and found to be out of tolerance. The connector and the adapter are welded to each other such that the cylindrical axes of the two components are coaxial. The positional tolerance condition requires that all points on the outer surface of the CAA must be within a defined maximum diameter, as illustrated in Figure 1. Two different methods have been developed to measure the CAA positions from coordinate measuring machine (CMM) data. One method (RevD) extrapolates the data from two circles approximately midway from the weld region to each end. The second method (RevF) measures points that are much closer to the actual ends.

42 ENGINEERING↗

Reducing Uncertainty in Offshore Wind Energy Yield Estimates via a Metocean Reference Site

The offshore wind industry is burgeoning in the coastal waters of the United States, specifically along the Atlantic. For wind energy to be successful, reliable observations and model simulations are needed for resource assessment and forecasting. While many of these activities have already begun, there is currently an absence of observations at hub-height in these waters, with the closest available hub-height measurements usually taken onshore. Deployment of floating lidars has occurred through various federally funded projects, but only encapsulates time periods of a couple of years at best. Private industry is also beginning to leverage floating lidars, but this data is often proprietary, and not shared with the general public. In this work, we make the case for a metocean reference site for long-term offshore wind energy. Specifically, we quantify the impact of having a metocean reference site compared to other methods of determining hub-height winds and energy production. We use an offshore floating lidar to directly measure the wind resource, and compare these measurements to predictions derived from other widely-available surface meteorological variables. These prediction methods (vertical extrapolation, machine learning, and NWP output) produce a variety of vertical wind speed profiles, of which produce different energy yield estimates for a reference offshore turbine (Figure 1). While some methods perform reasonably well against the lidar, the uncertainty in these energy yield estimates has financial implications, further illustrating the need for long-term measurements in coastal waters.

machine learning↗

Dynamic Model Agnostic Reliability Evaluation of Machine-Learning Models Integrated in Instrumentation & Control Systems

In recent years, the field of machine learning (ML), specifically neural networks, has grown significantly and has spurred research in its applicability to digital instrumentation and control systems (DI&C). While ML models have shown promise in operational contexts, the trustworthiness of using such algorithms has not been adequately assessed. Failures of ML integrated systems are not well understood, and the lack of comprehensive risk modeling can degrade the trustworthiness in these systems. In recent reports by the National Institute for Standards and Technology (NIST) [1] and the Nuclear Regulatory Commission (NRC) [2], they indicate that trustworthiness in ML is a critical barrier and will play a vital role in the safe, accountable, and secure operation of intelligent systems. Thus, in this work, we demonstrate a dynamic model-agnostic method to quantify the relative reliability of AI/ML predictions by incorporating out-of-distribution (OOD) detection on the training dataset. It is well documented that most ML algorithms excel at interpolation (or near-interpolation) tasks but experience significant performance degradation at extrapolation. The method, referenced as the Laplacian distributed decay for reliability (LADDR), determines the difference between the operational and training datasets which can used to the relative reliability of AI/ML predictions. LADDR is then demonstrated on a feedforward neural network based digital twin used for the prediction of safety significant factors during a loss-of-flow transient. LADDR is used to demonstrate how training data can be used as evidence to support the relative reliability of ML/AI predictions enhancing the overall trustworthiness of the system.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Geophysical methods reveal the soil architecture and subsurface stratigraphic heterogeneities across land-lake interfaces along Lake Erie

Abstract Purpose The land-lake interface is a unique zone where terrestrial and aquatic ecosystems meet, forming part of the Earth’s most geochemically and biologically active zones. The unique characteristics of this interface are yet to be properly understood due to the inherently high spatiotemporal variability of subsurface properties, which are difficult to capture with the traditional soil sampling methods. Geophysical methods offer non-invasive techniques to capture variabilities in soil properties at a high resolution across various spatiotemporal scales. Methods We combined electromagnetic induction (EMI), electrical resistivity tomography (ERT), and ground penetrating radar (GPR) with data from soil cores and in situ sensors to investigate hydrostratigraphic heterogeneities across land-lake interfaces along the western basin of Lake Erie. Results EMI revealed high spatial heterogeneities in ECa distribution across the land-lake interfaces, with higher values in the wetland and transition zones compared to the upland zone. Soil ECa maps matched soil maps from a public database with the hydric soil units delineated as high conductivity zones (ECa > 40 mS/m). ERT and GPR showed vertical variation in soil properties with clear stratigraphic boundaries, and correlation of ERT profiles with lithologs from piezometers revealed the stratigraphic units of silt–clay and till sequence down to 3.5 m depth which are consistent with the surficial geology of the study area. Conclusions These results validate the use of multiple geophysical methods for extrapolating soil properties and mapping stratigraphic structures at land-lake interfaces, thereby providing the missing information required to improve the earth system model (ESM) of coastal interfaces.

54 ENVIRONMENTAL SCIENCES↗

Follow the power—pathways to steady-state tokamak reactors

Abstract Diagramming pathways of dimensionless power is a potent method for extrapolating between operating points on present-day tokamaks and future burning plasma devices. The heat transport power, current drive power, H-mode threshold power and other ‘plasma physics’ powers can be expressed in dimensionally correct (or normalized) form as Pa 3/4 , where P is the power and a is the plasma minor radius, with the relative gyroradius ( ρ * ) dependence ranging from gyro-Bohm-like for transport ( P a 3 / 4 ∝ ρ * − 3 / 2 ), Bohm-like for current drive ( P a 3 / 4 ∝ ρ * − 5 / 2 ) and worse than Bohm-like for H-mode threshold ( P a 3 / 4 ∝ ρ * − 3 ). The D–T fusion power cannot be normalized in the same fashion since it is governed by nuclear physics, but at fixed B T it scales like P a 3 / 4 ∝ ρ * − 9 / 2 . Other ‘mixed physics’ powers can be incorporated into the dimensionless power framework by holding B T fixed in the same manner. Diagramming these dimensionless powers vs ρ * shows how the pathway to a steady-state reactor can be optimized relative to various operational boundaries. Using a steady-state hybrid discharge with β N = 3.2 from DIII-D as the starting point, a multi-parameter optimization finds an attractive pathway to steady-state operation on ITER using 76 MW of current drive power (fusion gain of Q fus = 8), along with a pathway to Q fus = 20 in a JET-sized steady-state reactor with B T = 10 T.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

$J/\psi $-p scattering length from the total and differential photoproduction cross sections

The J/ψ-p scattering length, αJ/ψp, can be extracted from the J/ψ photoproduction cross section near threshold using the Vector Meson Dominance (VMD) model to relate the reaction γp→J/ψp to J/ψp→J/ψp. Such estimates based on experimental data result in values for |αJ/ψp|, which are much lower than most of the theoretical predictions. In this work, we study the relations between the different results, depending on the use of the total or the differential cross sections, and the method of extrapolating the data to threshold in the case of a low-statistics data sample, such as the near threshold J/ψ photoproduction dataset. We estimate a range for |αJ/ψp| of 0.003–0.025 fm as extracted from experimental data within the VMD model and discuss possible reasons for such lower values compared to the theoretical results.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Revealing the Electrochemical Kinetics of Electrolytes in Nanosized LiFePO 4 Electrodes

Lithium-ion battery rate performance is ultimately limited by the electrolyte, yet the behaviors of electrolytes during high-rate (dis)charge remain elusive to electrochemical measurement. Herein, we develop and study a nanosized LiFePO 4 model system in which the electrolyte completely controls the electrochemical kinetics of the porous electrode. Impedance spectroscopy, cyclic voltammetry, and rate performance testing prove that ion transport in the electrolyte is the sole rate-limiting process, even in thin electrodes. A novel pseudo-steady-state extrapolation (S3E) method for Tafel analysis shows that LiFePO 4 obeys Butler-Volmer kinetics with a transfer coefficient of 3. The combination of these unexpectedly rapid interfacial kinetics and an activation barrier for phase transformation causes extreme reaction heterogeneity, which manifests as a moving reaction zone. Resistance versus capacity analysis enables direct measurement of electrolyte resistance growth during high-rate (dis)charge, revealing how the interaction between concentration polarization and a moving reaction zone controls electrolyte rate performance in LiFePO 4 electrodes. This work elucidates the profound impacts of the electrolyte on electrochemical measurements in porous battery electrodes: when the active material is not rate limiting, it is impossible to directly measure the intrinsic kinetics of the active material, but conversely, it becomes possible to directly measure the kinetics of the electrolyte.

Electrochemistry↗

A parcel-level evaluation of distributed wind opportunity in the contiguous United States

This study examines the potential for distributed wind (DW) energy across the contiguous United States, leveraging advancements in the National Renewable Energy Laboratory's distributed wind model, dWind. The novel modeling approach described here utilizes a high-resolution dataset and analyzes over 150 million parcels, a significant improvement from prior methods that extrapolated results from a smaller random sample. This achievement is enabled through key model performance improvements, such as transitioning to multiprocessing, which reduces runtime by 97 %. This optimized, high-resolution approach allows the inspection of technology deployment potential and impact on a variety of scales tailored to individual properties and regions. The results here align with prior work showing substantial opportunity for energy generation using DW technologies. Key findings reveal a substantial increase from prior results in estimated technical and economic potential for DW. Metrics tuned to highlight economic potential also show increased incentives supporting rural adoption. Results are spatially aggregated for usability and published via the U.S. Department of Energy Wind Data Portal and a custom scenario visualization platform, aiding policymakers, industry, and property owners in assessing DW viability across various scenarios and spatial scales.

17 WIND ENERGY↗

Quantum error mitigation by layerwise Richardson extrapolation

A widely used method for mitigating errors in noisy quantum computers is Richardson extrapolation, a technique in which the overall effect of noise on the estimation of quantum expectation values is captured by a single parameter that, after being scaled to larger values, is eventually extrapolated to the zero-noise limit. We generalize this approach by introducing layerwise Richardson extrapolation (LRE), an error mitigation protocol in which the noise of different individual layers (or larger chunks of the circuit) is amplified and the associated expectation values are linearly combined to estimate the zero-noise limit. The coefficients of the linear combination are analytically obtained from the theory of multivariate Lagrange interpolation. LRE leverages the flexible configurational space of layerwise unitary folding, allowing for a more nuanced mitigation of errors by treating the noise level of each layer of the quantum circuit as an independent variable. Furthermore, we provide numerical simulations demonstrating scenarios where LRE achieves superior performance compared to traditional (single-variable) Richardson extrapolation.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

How Should Machine Learning Be Successfully Used for Wind Speed Vertical Extrapolation?

An accurate characterization of the wind resource available at hub-height is required for an efficient and bankable wind farm project. However, direct measurement of wind speed at the constantly increasing height of the hub of commercial wind turbines is oftentimes challenging and expensive, so that it is common practice to vertically extrapolate the wind resource from lower and more easily accessible levels. Conventional techniques for wind speed vertical extrapolation include the use of a power law and a logarithmic profile. While simple, the limits in accuracy of these methods have been shown in various studies. Recently, machine learning has been proposed as a new method to vertically extrapolate winds. All the published studies on the topic assess the performance of machine learning techniques in vertically extrapolating the wind resource at the same location where the algorithm has been trained. However, in real-world applications, the wind resource is measured at the instrument location, but it then needs to be extrapolated at hub height at the location of the wind turbines within the find farm. To be able to fully recommend the use of machine learning techniques over the simple power law and logarithmic law, the spatial variability of the performance improvements of the machine learning approaches needs to be assessed. Here, we propose a round-robin validation of a machine learning-based method for wind speed extrapolation. We use 20 months of observations at four locations spanning a 100 km wide region at the Southern Great Plains (SGP) atmospheric observatory, in north-central Oklahoma. At each location, we train a random forest to predict 30-min average wind speed at 143 m AGL. We use as input features lidar wind speed at 65 m AGL, time of day, sonic anemometer wind speed at 4 m AGL, turbulent kinetic energy, and Obukhov length. First, we perform a same-site comparison of the performance of the proposed random forest against the conventional techniques for wind speed extrapolation (namely power law and logarithmic profile, with widely accepted stability corrections). We find that the random forest outperforms the power law in vertically extrapolating wind speed in all the considered stability regimes, with a 33% reduction in MAE for stable conditions, and a 31% reduction in unstable conditions. Similar results are found when comparing predictions of extrapolated winds from the logarithmic profile and the random forest with the observed values. Next, we propose a round-robin validation, to use the random forest trained at each site to extrapolate wind speed at the remaining three sites. We find that the performance of the random forest approach degrades when the algorithm is tested at a site different than the training one. However, even under those circumstances, the machine learning-based approach still outperforms the conventional techniques for wind speed extrapolation, with, on average, a reduction in mean absolute error between 15 and 20% over the conventional methods, with the largest benefits obtained under stable conditions.

Monte Carlo↗