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At least 37 records · Page 2

Autonomous Acoustic Receiver System for 3D Tracking and Monitoring Real-Time Fish Survival (CRADA 448)

Develop technologies that reduce the delay between changing hydropower operations and the acquisition of knowledge regarding fish behavior and survival and to reduce the cost and effort to obtain behavioral information of fish that is both accurate and detailed. The technologies being proposed would allow hydropower operators to quickly understand the impact of operational changes on fish and allow fisheries researchers to study fish behavior in high resolution at locations that previously would have been unfeasible.

13 HYDRO ENERGY↗

In Search of a Cost-Effective Approach for Estimating Dam Passage Survival

Abstract Passage of downstream-migrating fishes through hydropower dams poses a management issue in rivers throughout the world. As such, regulations have been enacted at many locales to understand and limit fish losses by requiring dam passage survival estimation. However, limiting estimates of survival to the dam and immediate tailrace presents a challenge to researchers. In this study, two alternative release–recapture methods were used to estimate dam passage survival of juvenile salmonids through Lower Granite Dam on the Snake River, Washington, in 2018. One approach, the virtual/paired-release (ViPRe) model, was extensively used in the Columbia–Snake River basin at federally operated hydroelectric dams during 2010–2014. This existing approach uses three releases of tagged smolts to isolate dam passage survival, defined as survival from the upstream dam face to the tailrace mixing zone 1–2 km downstream of the dam. An alternative approach, the virtual release/dead-fish correction (ViRDCt) model, uses one live-release group paired with a release of dead tagged fish at the dam to estimate the same survival parameter. The alternative estimation approaches were tested on two spring out-migrating stocks, yearling Chinook Salmon Oncorhynchus tshawytscha and steelhead Oncorhynchus mykiss, and on a summer out-migrating stock of subyearling Chinook Salmon. The alternative estimates for these stocks were all within 1 SE. However, the ViRDCt model produced survival estimates with SEs that were 59% smaller than those of the existing ViPRe model and did so using 42% fewer tagged fish and one less downstream acoustic detection array. Because of the reduced sample size, nearly US$540,000 less in tag costs and 4,000 fewer labor-hours were required to implement the ViRDCt model compared to the ViPRe model. As such, the ViRDCt model represents a cost-effective and precise approach to characterizing dam passage survival.

59 BASIC BIOLOGICAL SCIENCES↗

Evolution of Gravity Receptors in the Ear

The general status of a grant to investigate the origins and evolution of two hair cell types in the ears of a teleost fish, Astronotus ocellatus (the oscar), is presented. First, it was demonstrated that the cells in the rostral end of the saccule of the , Carassius auratus, are type 1-like, while those at the caudal end are type 2 cells. It was demonstrated that the dichotomy of hair cell types found in the utricle of the oscar is also found in the goldfish. Second, the lateral line system of the oscar was examined using gentamicin sulphate, an ototocix drug that destroys type 1- like hair cells but does not appear to damage type 2 hair cells. It was demonstrated that the hair cells found in neuromasts of lateral line canal organs were totally destroyed within 1 day of treatment, while the hair cells in free neuromasts were undamaged after 12 days of treatment. Third, it was demonstrated that the calyx, the specialized nerve ending, is not unique to amniotes and that it is present at least in the cristae of semicirular canals in goldfish. These results have demonstrated that: (1) there are multiple hair cell types in the vestibular endorgans of the ear of fishes, (2) these hair cell types are very similar to those found in the mammalian vestibular endorgans, (3) the nerve calyx is also present in fishes, and (4) multiple hair cell types and the calyx have evolved far earlier in the course of vertebrate evolution than heretofore thought. Understanding the structure of the vestibular endorgans has important implications for being able to understand how these organs respond to gravistatic, acceleration and acoustic input. The vestibular endorgans of fishes may provide an ideal system in which to analyze functional differences in hair cells. Not only are the two hair cell types similar to those found in mammals, they are located in very discrete regions in each endorgan. Thus, it is relatively easy to gain access to cells of one or the other type. The presence of two cell types in the lateral line have equally significant implications for studies of the vestibular system.

Popper, Arthur N.↗

The Octavolateralis System and Mauthner Cell: Interactions and Questions

This paper is an overview of some of the major points to arise in the accompanying contributions of this special symposium issue. The symposium papers arose out of discussions among investigators interested in the inner ear and Mauthner cell, with the focus on hydrodynamic components that activate the Mauthner cell through the octavolateralis system. The intention of the symposium was to investigate the possibility of using our knowledge of the Mauthner system to help understand acoustic processing by the ear, and of using, our knowledge of fish hearing to better understand Mauthner cell function. This is the first attempt to take a broad look at both systems to see how they might function together. As such, these proceedings can serve as a mini-tutorial for investiaators interested in one system or the other. In this summary paper we also identify some of the major uncertainties in our understanding of the ear-Mauthner connection. These include questions about: (1) the identity of the acoustic stimuli that are neuroethologically relevant to the Mauthner system; (2) the relative importance of the various octavolateralis inputs (acoustic, vestibular, or lateral line); (3) the contribution of the different various acoustic endorgans to the Mauthner system; (4) whether the Mauthner system can distinguish sound source location; and (5) whether Mauthner neurobiology is compatible with the prevailing model (the phase model) for determining sound source location by fishes. We believe these issues provide potentially useful avenues of future investigation that should give important insights into both acoustic processing by fish and the function of the Mauthner system.

Eaton, Robert C.↗

Tracking animal movements via collaborative acoustic telemetry networks: Multiscale habitat use, phenology, and management insights

Abstract Estuaries support diverse fish and invertebrate communities, including resident species that rely on estuarine habitats year‐round and transient migratory species. The unique movement patterns of these animals connect habitats within and far beyond the estuary and are integrally linked to fisheries management objectives. With a focus on Chesapeake Bay, this study leveraged data from collaborative acoustic telemetry networks in the northwest Atlantic to assess habitat use and phenology of movements for seven species of fish (cownose rays, dusky sharks, smooth dogfish, alewife, striped bass, common carp, and blue catfish) and one invertebrate (horseshoe crabs). A total of 288 acoustically tagged individuals were detected >3.2 million times (6,743 to 2,095,717 detections per species) on receivers across ~20.5 degrees of latitude spanning the North American Atlantic seaboard from Florida, USA, to New Brunswick, Canada. Common metrics of movement and phenology grouped these species as resident (common carp, blue catfish, horseshoe crabs), primarily resident in estuaries (juvenile striped bass), and coastal migrant (cownose rays, dusky sharks, smooth dogfish, alewife); maximum distance traveled varied by three orders of magnitude among these species. Further analysis of phenology for coastal migrants elucidated the timing and duration of these species' use of Chesapeake Bay. Collectively, movements linked habitats within Chesapeake Bay and connected the estuary to coastal ecosystems both to the north (e.g., alewife) and south (e.g., cownose rays), creating networks of fisheries management jurisdictions that varied in complexity and identified opportunities for enhancement to current management or co‐management of some species. Our results elucidate the importance of estuaries to species with diverse movement behaviors, identify scales and pathways of habitat connectivity via animal movements, and highlight the utility of collaborative acoustic telemetry networks for quantifying movements relevant to both ecological research and fisheries management.

Livernois, Mariah C.↗

A subdermal tagging technique for juvenile sturgeon using a new self-powered acoustic tag

Abstract Background A new technology for a self-powered acoustic tag (SPT) was developed for active tracking of juvenile fish, intended to avoid the typical battery life constraints associated with active telemetry technology. We performed a laboratory study to evaluate a subdermal tagging technique for the SPT and effects of the tag on survival, tag retention, and growth in juvenile white sturgeon ( Acipenser transmontanus ). Results Survival was associated with tag retention. White sturgeon implanted with the SPT ( n = 30) had 93% survival and tag retention by day 28, 67% by day 101, and 38% by day 595 post-tagging. Sturgeon implanted with a passive integrated transponder (PIT) tag only (control group) had 96% survival and tag retention by day 28, and through day 101 post-tagging. Fish in the PIT group were repurposed after day 101, so no comparisons with this group were made at day 595 post-tagging. Specific growth rate (SGR) for fork length was a median of 0.25% day −1 by day 28 for the SPT group, which was significantly lower than the PIT group (median: 0.42% day −1 ; n = 27). The SPT and PIT groups had similar SGR fork length by day 101 post-tagging (0.22 and 0.25% day −1 , respectively). SGR weight was also lower for the SPT group compared to the PIT group on day 28 (1.39 and 2.11% day −1 , respectively), but the difference again dissipated by day 101 (0.79 and 0.88% day −1 , respectively). Conclusion The tagging technique and placement of the SPT allowed the tag to remain upright along the flank of the sturgeon to ensure maximum battery output of the SPT; however, retention rates of the SPT were not ideal. We provided suggestions to improve the tagging technique. Suggestions included tagging fish that are > 400 mm FL, moving the incision location to extend the cavity and create a pocket for the placement of the SPT, and performing a quantitative wound-healing evaluation. Future studies are therefore recommended to evaluate these suggestions.

59 BASIC BIOLOGICAL SCIENCES↗

The BIRDIES Experiment: Measuring Beryllium Isotopes to Resolve Dynamics in the Stratosphere

Cosmogenic beryllium-10 and beryllium-7, and the ratio of the two (10Be/7Be), are powerful atmospheric tracers of stratosphere–troposphere exchange (STE) processes; however, measurements are sparse for altitudes well above the tropopause. We present a novel high-altitude balloon campaign aimed to measure these isotopes in the mid-stratosphere called Beryllium Isotopes for Resolving Dynamics in the Stratosphere (BIRDIES). BIRDIES targeted gravity waves produced by tropopause-overshooting convection to study their propagation and impact on STE dynamics, including the production of turbulence in the stratosphere. Two custom-designed payloads called FiSH and GASP were flown at altitudes approaching 30 km to measure in situ turbulence and beryllium isotopes (on aerosols), respectively. These were flown on nine high-altitude balloon flights over Kansas, USA, in summer 2022. The atmospheric samples were augmented with a ground-based rainfall collection targeting isotopic signatures of deep convection overshooting. Our GASP samples yielded mostly negligible amounts of both 10Be and 7Be collected in the mid-stratosphere but led to design improvements to increase aerosol capture in low-pressure environments. Observations from FiSH and the precipitation collection were more fruitful. FiSH showed the presence of turbulent velocity, temperature, and acoustic fluctuations in the stratosphere, including length scales in the infra-sonic range and inertial subrange that indicated times of elevated turbulence. The precipitation collection, and subsequent statistical analysis, showed that large spatial datasets of 10Be/7Be can be measured in individual rainfall events with minimum terrestrial contamination. While the spatial patterns in rainfall suggested some evidence for overshooting convection, inter-event temporal variability was clearly observed and predicted with good agreement using the 3D chemical transport model GEOS-CHEM.

58 GEOSCIENCES↗

Altimeter Data for Operational Use in the Marine Environment

TOPEX/Poseidon has been collecting altimeter data continuously since October 1992. Altimeter data have been used to produce maps of sea surface height, geostrophic velocity, significant wave height, and wind speed. This information is of proven use to mariners as well as to the scientific community. Uses of the data include commercial and recreational vessel routing, ocean acoustics, input to geographic information systems developed for the fishing industry, identification of marine mammal habitats, fisheries management, and monitoring ocean debris. As with sea surface temperature data from the Advanced Very High Resolution Radiometer (AVHRR) in the late 1980s and early 1990s, altimeter data from TOPEX/Poseidon and ERS-1 and -2 are in the process of being introduced to the marine world for operational maritime use. It is anticipated that over the next few years companies that specialize in producing custom products for shipping agencies, fisheries and yacht race competitors will be incorporating altimeter data into their products. The data are also being incorporated into weather and climate forecasts by operational agencies both in the US and Europe. This paper will discuss these products, their uses, operational demonstrations and means of accessing the data.

Digby, Susan↗

Rapidly Deployable Acoustic Monitoring and Localization System Based on a Low-Cost Wave Buoy Platform

The primary objective of this project is to develop a cost-effective, fit-for-purpose environmental monitoring system, “NoiseSpotter®,” that characterizes, classifies, and provides accurate location information for anthropogenic and natural sounds in near real-time. NoiseSpotter was developed to support the evaluation of potential acoustic effects of marine energy (ME) projects. By utilizing a compact array of three acoustic particle motion sensors, NoiseSpotter triangulates individual bearings to provide sound source localization to within 5% accuracy, allowing the ability to discern ME device sounds relative to other confounding sounds in the environment, while providing location estimates to nearby marine mammals for environmental mitigation purposes. The ME industry needs proven solutions to meet environmental impact assessment needs. The NoiseSpotter® includes off-the-shelf, modular components that are easy to assemble and disassemble. Its acoustic particle motion sensors are commercially available and the data logger and real-time telemetry system is designed to be plug-and-play. The entire system is relatively compact and can be deployed from small vessels. NoiseSpotter’s near real-time capability enables operational monitoring of ME sounds, particularly during early stages of technology adoption to facilitate mitigation of potential noise effects. Widespread adoption of the technology for acoustic monitoring of ME devices requires that it be cost effective; hence the anticipated commercial cost of system hardware is $35,000. This project contributes to reducing barriers to ME testing through support of scientific research focused on reducing or mitigating environmental risks and lowering costs and complexity of environmental monitoring. This project has developed an acoustic monitoring system, NoiseSpotter® (U.S. Patent No. 11,156,734 and U.S. Registered Trademark No. 6,442,313), to detect and characterize baseline noise and sounds from ME operations and support geolocation of detected sounds. The intended outcome of the project is to mitigate concerns about the potential for ME device noise to alter marine mammal or fish behavior. NoiseSpotter® enables cost-effective, near real-time acoustic monitoring of an operational ME device relative to ambient environmental noise and provides a technical basis for ME developers seeking to navigate the permitting process in an efficient manner.

16 TIDAL AND WAVE POWER↗

Advanced Laboratory and Field Arrays: Evaluating Sampling Techniques for MHK Biological Monitoring (Task 6)

The overall goal of the task was to identify cost effective biological sampling techniques for MHK environmental monitoring. Protected, demersal, and pelagic fish and selected nektonic invertebrates were surveyed using capture and remote sensing techniques at the PacWave sites. The performance of capture and remote sensing monitoring techniques were evaluated and generic nekton monitoring indices were developed for MHK technologies and sites. In parallel to data collections at the PacWave site, the ability of regression models to characterize, detect, and predict change in acoustic data was evaluated using acoustic data collected in Admiralty Inlet, WA, during a biological monitoring study of the proposed SnoPud tidal turbine project site. Expected outcomes of these efforts included an evaluation of instrumentation and techniques used to monitor biological variability; identification of data streams that can be used to detect and quantify change; and sampling requirements to ensure detection of change in monitored variables.

13 HYDRO ENERGY↗

An Overview of My Internship with the Ecological Program at John F. Kennedy Space Center

During my internship with Innovative Health Applications, I participated in numerous longterm research projects involving the study of various plant and animal life at the Kennedy Space Center (KSC). I observed the monitoring of nesting sea turtles. I learned about the transfer of egg clutches from the northern Gulf Coast in an effort to help the hatchlings avoid the oil spill in the Gulf of Mexico. I gained knowledge of tracking the movements of important sport fish and sharks in this area using a hydro-acoustic tag and receiver system. This effort included routinely taking water quality data at multiple sites around KSC. Alligator population and nesting assessments was another part of my internship. I observed the biologists take morphometric measurements, blood, urine and tissue samples from alligators found in KSC waterways. I assisted in taking photosynthesis and reflectance measurements on various scrub oaks and palmettos. I participated in Florida Scrub-Jay surveys in an effort to monitor their population trends and was involved in Southeastern beach mouse trapping and identification. I also assisted in seagrass surveys monitoring the health of the seagrass beds.

Owen, Samantha↗

Quantifying conditional probabilities of fish-turbine encounters and impacts

Tidal turbines are one source of marine renewable energy but development of tidal power is hampered by uncertainties in fish-turbine interaction impacts. Current knowledge gaps exist in efforts to quantify risks, as empirical data and modeling studies have characterized components of fish approach and interaction with turbines, but a comprehensive model that quantifies conditional occurrence probabilities of fish approaching and then interacting with a turbine in sequential steps is lacking. We combined empirical acoustic density measurements of Pacific herring ( Clupea pallasii ) and when data limited, published probabilities in an impact probability model that includes approach, entrainment, interactions, and avoidance of fish with axial or cross-flow tidal turbines. Interaction impacts include fish collisions with stationary turbine components, blade strikes by rotating blades, and/or a collision followed by a blade strike. Impact probabilities for collision followed by a blade strike were lowest with estimates ranging from 0.0000242 to 0.0678, and highest for blade strike ranging from 0.000261 to 0.40. Maximum probabilities occurred for a cross-flow turbine at night with no active or passive avoidance. Estimates were lowest when probabilities were conditional on sequential events, and when active and passive avoidance was included for an axial-flow turbine during the day. As expected, conditional probabilities were typically lower than analogous independent events and literature values. Estimating impact probabilities for Pacific herring in Admiralty Inlet, Washington, United States for two device types illustrates utilization of existing data and simultaneously identifies data gaps needed to fully calculate empirical-based probabilities for any site-species combination.

collision risk↗

Sharks Associated With A Large Sand Shoal Complex: Community Insights From Longline and Acoustic Telemetry Surveys

Offshore sand shoals are a coveted sand source for coastal restoration projects and as sites for wind energy development. Shoals often support unique fish assemblages but their habitat value to sharks is largely unknown due to the high mobility of most species in the open ocean. This study pairs multi-year longline and acoustic telemetry surveys to reveal depth-related and seasonal patterns in a shark community associated with the largest sand shoal complex in east Florida, USA. Monthly longline sampling from 2012–2017 yielded 2,595 sharks from 16 species with Atlantic sharpnose (Rhizoprionodon terraenovae), blacknose (Carcharhinus acronotus), and blacktip (C. limbatus) sharks being the most abundant species. A contemporaneous acoustic telemetry array detected 567 sharks from 16 species (14 in common with longlines) tagged locally and by researchers elsewhere along the US East Coast and Bahamas. PERMANOVA modeling of both datasets indicate that the shark species assemblage differed more across seasons than water depth although both factors were important. Moreover, the shark assemblage detected at an active sand dredge site was similar to that at nearby undisturbed sites. Water temperature, water clarity, and distance from shore were habitat factors that most strongly correlated to community composition. Both sampling approaches documented similar single-species and community trends but longlines underestimated the shark nursery value of the region while telemetry-based community assessments are inherently biased by the number of species under active study. Overall, this study confirms that sharks can be an important component of sand shoal fish communities but suggests that deeper water immediately adjacent to shoals (as opposed to shallow shoal ridges) is more valuable to some species. Potential impacts to these nearby habitats should be considered when planning for sand extraction and offshore wind infrastructure.

Shark Management↗

Striped Mullet Migration Patterns in the Indian River Lagoon: A Network Analysis Approach to Spatial Fisheries Management

Striped mullet (Mugil cephalus) are numerically abundant forage fish, highly valuable as prey and commercially valuable to humans. From September to December, mullet in the Indian River Lagoon (IRL), Florida undergo an annual migration from inshore foraging habitats to oceanic spawning sites. However, their migratory pathways, in particular their intra-estuarine movement pathways, remain unknown. To address this knowledge gap, we utilized passive acoustic telemetry to assess the movement patterns of M. cephalus within the IRL. Thirty-two fish were tagged, generating usable tracks from 18 individuals. The mean (±s.d.) time that fish were detected in the array was ~38 ± 90 days, with the longest at 444 days. We also document the first evidence of skipped spawning in M. cephalus inhabiting waters of the southeastern United States. These data suggest impoundments around the Merritt Island National Wildlife Refuge appear to serve as important refugia for striped mullet while the Banana and Indian Rivers act as corridors during their inshore migratory movements. Through spatial fisheries management, high value habitat and connective elements utilized by mullet and other vital forage fish may be identified, to benefit both natural and human dynamics in estuarine systems.

Acoustic telemetry↗

Hydropower Biological Evaluation Toolset Best Practice Guide

Field studies using live fish are necessary for the evaluation of turbine biological performance, but they cannot determine the specific hydraulic conditions or physical stresses experienced by the fish, the locations where deleterious conditions occur, or the specific causes of the biological response. Using the Sensor Fish (SF) sensing technology, this deficiency can be overcome because the SF can be released independently or concurrently with live fish directly into operating infrastructure, and it takes high-frequency measurements of hydraulic conditions such as pressure, acceleration, and rotation acting on a body in situ during downstream passage. The Hydropower Biological Evaluation Tools (HBET; Hou et al. 2018) software package, developed by Pacific Northwest National Laboratory (PNNL), is designed to assemble, organize, and process data collected by the PNNL-developed SF and by live fish. HBET was developed specifically to design SF field studies, process the raw data, and analyze the processed data efficiently and scientifically. Its objectives are to facilitate SF studies focused on characterizing hydraulic conditions and to apply SF data for evaluating the impacts on fish from passage through hydro-structures. HBET allows users to design new studies, analyze data, perform statistical analyses, and evaluate predicted biological responses. It can be used by researchers, turbine designers, hydropower operators, and regulators to evaluate hydro-structures to enhance environmental sustainability in a cost-effective manner.

13 HYDRO ENERGY↗

Applying Two Active Acoustic Technologies to Document Presence of Large Marine Animal Targets at a Marine Renewable Energy Site

Coastal regions are highly used by humans. The growing marine renewable energy (MRE) industry will add to existing anthropogenic pressures in these regions. Regulatory bodies require animal risk assessment before new industrial activities can progress, and MRE is no exception. Preliminary data of marine mammal use of an MRE device deployment location could be informative to permitting. A combination of downlooking hydroacoustics using an echosounder and acoustic camera (imaging sonar) was used to provide a number of large targets (proxy for large fish and marine mammals) in an area of interest for MRE tidal turbine deployment in Western Passage, Maine, USA. Data were collected in May, June, August, and September of 2010 and 2011. Of the nine large targets confirmed to be animals, eight were porpoises and one was a shark. Few large targets were observed in May and June, with the majority (90%) being present in August and September of both years. The most large targets were observed when tidal current speed was less than 1 m·s−1. These data provide a preliminary assessment of large targets in a single location over sixteen 24-h surveys. The aforementioned methodology could be used for future pre- and post-installation assessments at MRE device deployment locations. Their use in concert with visual and passive acoustic monitoring can provide water depth usage by marine mammals, which is a metric that is difficult to assess with passive acoustic and visual techniques.

Staines, Garrett↗

Lab Collaboration Project (LCP) for Marine Energy: Quantifying Collision Risk for Fish and Turbines Final Technical Report (Task 10)

A persistent environmental concern for the widespread deployment of tidal turbines is the potential for fish and marine mammals to collide with rotating blades (Copping et al. 2016, Copping and Hemery 2020). This is a consequence of well-documented bird and bat mortalities around wind turbines (Smallwood 2007, Thompson et al. 2017), as well as fish mortality at conventional hydropower dams (Pracheil et al. 2016) and tidal barrages (Dadswell and Rulifson 1994). However, unlike hydropower dams or barrages, tidal turbines do not involve structures that channel all flow through the turbines. Similarly, while functionally similar to wind turbines, tidal turbines often operate at lower relative velocities and, depending on the end-use application, may be significantly smaller than utility-scale wind turbines. Both of these factors reduce the likelihood and severity of collision, but the knowledge base on this topic remains limited.

13 HYDRO ENERGY↗