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NASA NTRS1974

Technology Utilization House Study Report

The objectives of Project TECH are: (1) to construct a single family detached dwelling for demonstrating the application of advanced technology and minimizing the requirement for energy and utility services, and (2) to help influence future development in home construction by defining the interaction of integrated energy and water management systems with building configuration and construction materials. Components and methods expected to be cost effective over a 20 year span were studied. Emphasis was placed on the utilization of natural heating and cooling characteristics. Orientation and location of windows, landscaping, natural ventilation, and characteristics of the local climate and microclimate were intended to be used to best advantage. Energy conserving homes are most efficient when design for specific sites, therefore project TECH should not be considered a prototype design suitable for all locations. However, it does provide ideas and analytical methods which can be applied to some degree in all housing.

Source record↗

NASA NTRS2024

Jefferson County Ecological Conservation: Quantifying the Effects of Hydrologic Restoration in the Camas National Wildlife Refuge and Mud Lake Wildlife Management Area

Wetlands in the Camas National Wildlife Refuge and Mud Lake Wildlife Management Area, a rare landscape feature in the Intermountain West, are crucial for migratory birds along the Pacific Flyway, yet these wetlands have experienced a noticeable decline in extent and inundation over the last 40+ years. Partners at the U.S. Fish and Wildlife Service and Idaho Department of Fish and Game have ongoing restoration efforts that are yet to be quantified. To assist these partners, we used NASA Earth observations to quantify change in wetland extent and determine if the restoration projects met the intended impact. The QA_PIXEL band from Landsat 5 Thematic Mapper (TM) and Landsat 8 Operational Land Imager (OLI) was used to identify water. Landsat 8 OLI imagery was also used for classifying landcover in ArcGIS Pro for 2016 and 2020 and to forecast landcover in 2060 using TerrSet’s Land Change Modeler. We also compared lidar data from 2011 and 2019 to detect changes in vegetation height, ground elevation, and surface water levels, and Sentinel-2 Multispectral Instrument (MSI) imagery to detect changes in vegetation health. Classification results indicated overall accuracies over 84% and Kappa indices above 0.80, well surpassing random classification performance. From 2016 to 2020 our classifications showed an 825 acre increase in wetland extent, and our forecasted 2060 model showed a 2795 acre decrease. Combining our partners’ knowledge of the area with our analyses, we created a remote sensing workflow to enhance future monitoring and decision-making. This study demonstrated the feasibility of NASA Earth observations in quantifying wetlands, informing restoration projects, and supporting avian conservation.

Cassidy Bromka↗

NASA NTRS2021

Southern Bhutan Ecological Forecasting II: Utilizing NASA Earth Observations to Model Land Cover Change and Elephant Wildlife Corridors in Southern Bhutan

The diverse landscapes of Bhutan host a rich biodiversity of animal and plant species. Asian elephants (Elephas maximus) are a flagship keystone wildlife species whose conservation is essential for the functioning of Bhutan’s forest ecosystems. Despite this, increasing habitat loss and human-elephant conflict continue to be detrimental to the survival of Asian elephants. The lack of information on Bhutan’s elephants and land use and land cover (LULC) trends present major challenges for Bhutan in modeling locations with suitable habitat and biological corridors for elephants. The DEVELOP Southern Bhutan Ecological Forecasting II team at NASA Goddard Space Flight Center partnered with the Bhutan Foundation, Bhutan Tiger Center, and Bhutan Ecological Society to help address this problem. The team mapped LULC in Bhutan for 2010 and 2015 by utilizing NASA Earth observations, including Landsat 5 Thematic Mapper (TM) and Landsat 8 Operational Land Imager (OLI) to acquire information on historical LULC patterns and view apparent land cover change. The team used the Linkage Pathways Tool of the Linkage Mapper Toolbox in ArcMap to derive biological corridor maps from habitat suitability model outputs of the previous term and known locations of protected areas in Bhutan. The corridor maps were used to view and assess corridor suitability and connectivity between protected parks. Project results are being provided to partners to help make informed decisions on the placement and conservation of elephant movement corridors.

Thinley Yidzin Wangden↗

NASA NTRS2023

Eastern Indigo Snake (Drymarchon couperi) Shelter Site Use in Peninsular Florida and Implications for Habitat Conservation

Shelters are critical for many species as protection from predators and extreme temperatures. Successful conservation of reptiles requires understanding both shelter site requirements and availability. The Eastern Indigo Snake (EIS) is endemic to the southeastern United States and is federally listed. Recovery has focused on maximizing unfragmented landscapes, with less attention on fine-scale features such as shelter sites. In the northern EIS range, Gopher Tortoise (Gopherus polyphemus) burrows are used extensively for shelter. Although EIS in peninsular Florida often shelter in tortoise burrows, they also use other shelters where tortoise burrows are scarce or absent. Solely focusing EIS survey and management efforts where Gopher Tortoises are present may overlook occupied habitats and misallocate resources. We investigated the importance of different shelter sites in central Florida using data from radio-tracked EIS. We modeled the use of shelter categories as a function of sex, season, and habitat using Bayesian multinomial generalized linear models. Results showed that EIS in peninsular Florida used Gopher Tortoise burrows across all seasons and habitats. Tortoise burrow use was highest in xeric habitats and lowest in mesic habitats where burrows are most and least abundant, respectively. There was less variability in shelter site use in disturbed habitats and flatwoods. Cool season tortoise burrow use across sexes and habitats in our study was much lower than in southern Georgia. Our results indicate that EIS are less dependent on Gopher Tortoise burrows in peninsular Florida and that suitable habitats with few or no tortoise burrows could still provide conservation value for EIS.

Bayesian hierarchical modeling↗

NASA NTRS2021

Grand Teton Ecological Forecasting: Assessing Forage Change and Winter Habitat Availability for Bighorn Sheep that Employ a High-Elevation Overwintering Strategy to Identify Areas for Intervention

Grand Teton National Park provides habitat for a small native population of approximately 125 bighorn sheep (Ovis canadensis). The reduction in population of this species is attributed to loss of low elevation habitat, changing local environmental and climatic conditions, and increased disturbance from backcountry recreation. In response to these changes, this population of sheep employs a unique high-elevation wintering strategy in which they amass large fat stores in the summer and expend as little energy as possible in the winter while foraging on high elevation wind-swept and snow-free areas. For this project, DEVELOP partnered with Grand Teton National Park and used NASA Earth observations including Landsat 8 Operational Land Imager (OLI), Landsat 7 Enhanced Thematic Mapper Plus (ETM+), Landsat 5 Thematic Mapper (TM), and Terra Moderate Resolution Imaging Spectroradiometer (MODIS) snow cover data to assess habitat suitability. Landcover change analyzed between 1987 and 2020 indicated shifting trends in grass and forb cover and tree cover. These trends persisted in the 2031 prediction, with grass cover decreasing and tree cover increasing, which translates to a loss of overall favorable habitat for bighorn sheep. Snow cover analyzed between 2001 and 2020 indicated similar unfavorable trends for the sheep with a decrease in barren areas, important for winter foraging. Finally, habitat suitability was modeled for 2020 and predicted to 2031 to determine habitat gains and losses for this species across the landscape. Overall, the results predicted decreases in suitable habitat and indicated that while these sheep are highly adaptable, strategies to manage suitable bighorn habitat may need to be employed rapidly to effectively conserve this species.

Remote sensing↗

NASA NTRS1996

A Conservation Strategy for the Florida Scrub-Jay on John F. Kennedy Space Center/Merritt Island National Wildlife Refuge: An Initial Scientific Basis for Recovery

The Florida Scrub-Jay (Aphelocoma coerulescens) is an indicator of ecosystem integrity of Florida scrub, an endangered ecosystem that requires frequent fire. One of the largest populations of this federally threatened species occurs on John F. Kennedy Space Center/Merritt Island National Wildlife Refuge. Population trends were predicted using population modeling and field data on reproduction and survival of Florida Scrub-Jays collected from 1988 - 1995. Analyses of historical photography indicated that habitat suitability has been declining for 30 years. Field data and computer simulations suggested that the population declined by at least 40% and will decline by another 40% in 1 0 years, if habitat management is not greatly intensified. Data and computer simulations suggest that habitat suitability cannot deviate greatly from optimal for the jay population to persist. Landscape trajectories of vegetation structure, responsible for declining habitat suitability, are associated with the disruption of natural fire regimes. Prescribed fire alone can not reverse the trajectories. A recovery strategy was developed, based on studies of Florida Scrub-Jays and scrub vegetation. A reserve design was formulated based on conservation science principles for scrub ecosystems. The strategy emphasizes frequent fire to restore habitat, but includes mechanical tree cutting for severely degraded areas. Pine thinning across large areas can produce rapid increases in habitat quality. Site-specific strategies will need to be developed, monitored, and modified to achieve conditions suitable for population persistence.

Breininger, D. R.↗

NASA NTRSDate not supplied

PFAS Treatment Pilot Study using Granular Activated Carbon at Kennedy Space Center, Florida

Per- and polyfluoroalkyl substances (PFAS) have been found in investigative derived waste (IDW) generated from groundwater sampling and remediation activities conducted at Kennedy Space Center (KSC), Florida. PFAS are exceptionally strong compounds because of carbon-fluorine bonds resulting in resistance to degradation, low chemical reactivity, compound stability, and persistence in the environment. The regulatory status of PFAS is very dynamic. PFAS is not considered a hazardous waste and has no federal or state (Florida) cleanup requirements at this time. Due to the current and unknown future of the regulatory and treatment landscape, non-hazardous IDW, based upon site volatile organic compounds (VOCs) regulated under Title 40 of Federal Regulations part 261, containing PFAS is not being processed for off-site waste disposal under KSC’s Resource Conservation and Recovery Act permit as a proactive precaution. Long-term storage of aqueous IDW in the meantime was determined to be inadequate due to the potential for spills and/or leaks. A very limited number treatment methods are available at this time. To date, granular activated carbon (GAC) and ion exchange technologies have been found to be some of the most consistent treatment options for removing PFAS from aqueous media. Therefore, a pilot study using GAC was developed at KSC to determine the feasibility of treating non-hazardous IDW containing PFAS to reduce the total volume of PFAS waste and minimize the risk of leaks or spills while storing the waste until complete PFAS-destructive treatment options are more readily available. NASA wanted the pilot test to be able to demonstrate the ability to completely remove 18 PFAS compounds and the site VOCs to below the state of Florida groundwater cleanup target levels (GCTLs).

Michael J Deliz↗

NASA NTRSDate not supplied

The Future of Oaks in the Santa Monica Mountains: A Case Study in Using Remote Sensing Data for Species Distributions Models

The Woolsey Fire began on November 8, 2018, and lasted for almost two weeks, during which it burned almost 100,000 acres of valuable landscape and habitat, including a vast area of woodland. The persistence of key woodland species provides aesthetic, monetary, and ecological value to the landscape through carbon sequestration, air temperature moderation, and erosion mitigation, among other ecosystem services. This study investigated the impact of the Woolsey Fire on native woodland species distributions and identified areas suitable for restoration within the Santa Monica Mountains National Recreation Area. The team partnered with the Resource Conservation District of the Santa Monica Mountains; National Park Service, Santa Monica Mountains National Recreation Area; California Department of Parks and Recreation, Los Angeles County Division; County of Los Angeles Fire Department, Prevention Services Bureau, Forestry Division; County of Los Angeles Department of Regional Planning; and the University of Montana. The Earth observations used include data from Landsat 8 Operational Land Imager, NASA ER-2 Jet Airborne Visible InfraRed Imaging Spectrometer, Shuttle Radar Topography Mission, and RapidEye. The team produced maps of burn severity from the Woolsey Fire, its impact on plant species distributions, and habitat suitability projections for 2050 and 2099 to assist partners in prioritizing areas for restoration. A plant community classification was successfully created using Multiple Endmember Spectral Mixture Analysis (MESMA). Overall accuracy was assessed at 90.54% by comparing the classification to validation pixels derived from ground truth information provided by our partners.

Roger Ly↗

NASA NTRS2021

Population Viability Analysis (PVA) as a Platform for Predicting Outcomes of Management Options for the Florida Scrub-Jay in Brevard County

The Florida scrub-jay (FSJ) is a species in decline because of extinction debt caused by habitat fragmentation and degradation. Understanding and managing the species and its habitats is challenging due to the complex interactions among the social system, a dynamic mosaic of scrub habitat, and active management. To provide insights into the possible fates of the FSJ populations of mainland, cape, and island sections of Brevard County, we modeled the population dynamics using the Vortex population viability analysis (PVA) software. Vortex is an individual-based simulation that allowed us to include such factors as demographic rates dependent on habitat state, impact of helpers on breeding success, and helper to breeder transition probabilities responding to availability of nearby vacant optimal habitat and vacancies due to the death of breeders. Detailed modeling of the FSJ was possible only because a lot of data about the species and its habitats have been gathered over decades of intensive research. We followed a phased approach to constructing population models that incorporated the best available science and data to address a variety of conservation actions. The first phase focused on constructing a model that incorporates sociobiology and source-sink habitat dynamics. This model allowed us to address some of the most important questions about population size and habitat quality. Once the model framework was in place, we considered the real landscapes and actual local populations, rather than just generic representations of typical FSJ dynamics. After examining the viability of the metapopulations under current conditions, we explored the likely consequences of various management actions that might slow or reverse population declines.

Population Viability Analysis↗

NASA NTRS2000

BOREAS AFM-12 1-km AVHRR Seasonal Land Cover Classification

The Boreal Ecosystem-Atmosphere Study (BOREAS) Airborne Fluxes and Meteorology (AFM)-12 team's efforts focused on regional scale Surface Vegetation and Atmosphere (SVAT) modeling to improve parameterization of the heterogeneous BOREAS landscape for use in larger scale Global Circulation Models (GCMs). This regional land cover data set was developed as part of a multitemporal one-kilometer Advanced Very High Resolution Radiometer (AVHRR) land cover analysis approach that was used as the basis for regional land cover mapping, fire disturbance-regeneration, and multiresolution land cover scaling studies in the boreal forest ecosystem of central Canada. This land cover classification was derived by using regional field observations from ground and low-level aircraft transits to analyze spectral-temporal clusters that were derived from an unsupervised cluster analysis of monthly Normalized Difference Vegetation Index (NDVI) image composites (April-September 1992). This regional data set was developed for use by BOREAS investigators, especially those involved in simulation modeling, remote sensing algorithm development, and aircraft flux studies. Based on regional field data verification, this multitemporal one-kilometer AVHRR land cover mapping approach was effective in characterizing the biome-level land cover structure, embedded spatially heterogeneous landscape patterns, and other types of key land cover information of interest to BOREAS modelers.The land cover mosaics in this classification include: (1) wet conifer mosaic (low, medium, and high tree stand density), (2) mixed coniferous-deciduous forest (80% coniferous, codominant, and 80% deciduous), (3) recent visible bum, vegetation regeneration, or rock outcrops-bare ground-sparsely vegetated slow regeneration bum (four classes), (4) open water and grassland marshes, and (5) general agricultural land use/ grasslands (three classes). This land cover mapping approach did not detect small subpixel-scale landscape features such as fens, bogs, and small water bodies. Field observations and comparisons with Landsat Thematic Mapper (TM) suggest a minimum effective resolution of these land cover classes in the range of three to four kilometers, in part, because of the daily to monthly compositing process. In general, potential accuracy limitations are mitigated by the use of conservative parameterization rules such as aggregation of predominant land cover classes within minimum horizontal grid cell sizes of ten kilometers. The AFM-12 one-kilometer AVHRR seasonal land cover classification data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). The data files are available on a CD-ROM (see document number 20010000884).

Steyaert, Lou↗

NASA NTRS2016

Prospects of the ICESat-2 Laser Altimetry Mission for Savanna Ecosystem Structural Studies Based on Airborne Simulation Data

The next planned spaceborne lidar mission is the Ice, Cloud and land Elevation Satellite 2 (ICESat-2), which will use the Advanced Topographic Laser Altimeter System (ATLAS) sensor, a photon counting technique. To pre-validate the capability of this mission for studying three dimensional vegetation structure in savannas, we assessed the potential of the measurement approach to estimate canopy height in an oak savanna landscape. We used data from the Multiple Altimeter Beam Experimental Lidar (MABEL), an airborne photon counting lidar sensor developed by NASA's Goddard Space Flight Center. ATLAS-like data was generated using the MATLAS simulator, which adjusts MABEL data's detected number of signal and noise photons to that expected from the ATLAS instrument. Transects flown over the Tejon ranch conservancy in Kern County, California, USA were used for this work. For each transect we chose to use data from the near infrared channel that had the highest number of photons. We segmented each transect into 50 m, 25 m and 14 m long blocks and aggregated the photons in each block into a histogram based on their elevation values. We then used an automated algorithm to identify cut off points where the cumulative density of photons from the highest elevation indicates the presence of the canopy top and likewise where such cumulative density from the lowest elevation indicates the mean terrain elevation. MABEL derived height metrics were moderately correlated to discrete return lidar (DRL) derived height metrics r(sub 2) and RMSE values ranging from 0.60 to 0.73 and 2.9 m to 4.4 m respectively) but MATLAS simulation resulted in more modest correlations with DRL indices r(sub 2) ranging from 0.5 to 0.64 and RMSE from 3.6 m to 4.6 m). Simulations also indicated that the expected number of signal photons from ATLAS will be substantially lower, a situation that reduces canopy height estimation precision especially in areas of low density vegetation cover. On the basis of the simulated data, there is reason to believe that the ability of ICESat-2 to estimate height in savannas will be comparable to the original ICESat mission although the respective sensors have different measurement principles.

Gwenzi, David↗

NASA NTRS2020

Africa Food Security & Agriculture: Predicting the Likelihood of Human-elephant Conflict and Assessing Elephant Habitat Conditions During Extreme Drought and Crop Deficit in the Kavango-Zambezi Area

Human-wildlife conflict is increasingly more common due to human population growth, habitat fragmentation, and changing climatic conditions. This conflict is particularly evident in the Kavango-Zambezi area, where over three million people share the landscape with an abundant megafauna population. As the changing climate continues to exacerbate drought severity and subsequent food availability, conflict between humans and wildlife has become more prevalent. In the Kavango-Zambezi area, conflict between elephants and humans has resulted in crop loss, property damage, and threats to public safety. In order to manage current and future conflict, The Ecoexist Project and Connected Conservation have been working to empower farmers and conserve the natural habitat. This DEVELOP project employed Earth observations to conduct a time series analysis of vegetation health change, elephant movement, and climate conditions, from 2017 to 2020. Data were aggregated into the wet (November through April) and dry (May through October) seasons. The resulting analysis demonstrated the potential to use Landsat 8 Operational Land Imager (OLI), Global Precipitation Measurement’s Integrated Multi-satellite Retrievals for GPM (GPM IMERG), and TerraClimate data to identify potential areas of conflict under increased seasonal variability. An improved understanding of conflict drivers will help support sustainable wildlife conservation and food security in the future.

DEVELOP Project Summary↗

NASA NTRS2020

Africa Food Security & Agriculture: Predicting the Likelihood of Human-elephant Conflict and Assessing Elephant Habitat Conditions During Extreme Drought and Crop Deficit in the Kavango-Zambezi Area

DEVELOP Tech Paper↗

NASA NTRS2019

Size and Structure of the Sequence Space of Repeat Proteins

The coding space of protein sequences is shaped by evolutionary constraints set by requirements of function and stability. We show that the coding space of a given protein family— the total number of sequences in that family—can be estimated using models of maximum entropy trained on multiple sequence alignments of naturally occurring amino acid sequences. We analyzed and calculated the size of three abundant repeat proteins families, whose members are large proteins made of many repetitions of conserved portions of *30 amino acids. While amino acid conservation at each position of the alignment explains most of the reduction of diversity relative to completely random sequences, we found that correlations between amino acid usage at different positions significantly impact that diversity. We quantified the impact of different types of correlations, functional and evolutionary, on sequence diversity. Analysis of the detailed structure of the coding space of the families revealed a rugged landscape, with many local energy minima of varying sizes with a hierarchical structure, reminiscent of frustrated energy landscapes of spin glass in physics. This clustered structure indicates a multiplicity of subtypes within each family and suggests new strategies for protein design.

Jacopo Marchi↗

NASA NTRS1985

Agricultural applications for thermal infrared multispectral scanner data

The use of the Thermal Infrared Multispectral Scanner (TIMS) data in agricultural landscapes is discussed. The TIMS allows for narrow-band analysis in the 8.2-11.6 micron range at spatial resolutions down to 5 meters in cell size. A coastal plain region in SE Alabama was studied using the TIMS. The crop/plant vigor, canopy density, and thermal response changes for soils obtained from thermal imagery are examined. The application of TIMS data to hydrologic and topographic issues, inventory and conservation monitoring, and the enhancement and extraction of cartographic features is described.

Pelletier, R. E.↗

NASA NTRSDate not supplied

In Vitro Selections with RNAs of Variable Length Converge on a Robust Catalytic Core

In vitro selection is a powerful tool that can be used to understand basic principles of molecular evolution. We used in vitro selection to understand how changes in length and the accumulation of point mutations enable the evolution of functional RNAs. Using RNA populations of various lengths, we performed a series of in vitro experiments to select for ribozymes with RNA ligase activity. We identified a core ribozyme structure that was robust to changes in RNA length, high levels of mutagenesis, and increased selection pressure. Elaboration on this core structure resulted in improved activity which we show is consistent with a larger trend among functional RNAs in which increasing motif size can lead to an exponential improvement in fitness. We conclude that elaboration on conserved core structures is a preferred mechanism in RNA evolution. This conclusion, drawn from selections of RNAs from random sequences, is consistent with proposed evolutionary histories of specific biological RNAs. More generally, our results indicate that modern RNA structures can be used to infer ancestral structures. Our observations also suggest a mechanism by which structural outcomes of early RNA evolution would be largely reproducible even though RNA fitness landscapes consist of disconnected clusters of functional sequences.

In vitro evolution↗

NASA NTRS2019

Local frustration around enzyme active sites

Conflicting biological goals often meet in the specification of protein sequences for structure and function. Overall, strong energetic conflicts are minimized in folded native states according to the principle of minimal frustration, so that a sequence can spontaneously fold, but local violations of this principle open up the possibility to encode the complex energy landscapes that are required for active biological functions. We survey the local energetic frustration patterns of all protein enzymes with known structures and experimentally annotated catalytic residues. In agreement with previous hypotheses, the catalytic sites themselves are often highly frustrated regardless of the protein oligomeric state, overall topology, and enzymatic class. At the same time a secondary shell of more weakly frustrated interactions surrounds the catalytic site itself. We evaluate the conservation of these energetic signatures in various family members of major enzyme classes, showing that local frustration is evolutionarily more conserved than the primary structure itself.

Maria I. Freiberger↗

NASA NTRS2009

Modeling Bird Migration under Climate Change: A Mechanistic Approach

How will migrating birds respond to changes in the environment under climate change? What are the implications for migratory success under the various accelerated climate change scenarios as forecast by the Intergovernmental Panel on Climate Change? How will reductions or increased variability in the number or quality of wetland stop-over sites affect migratory bird species? The answers to these questions have important ramifications for conservation biology and wildlife management. Here, we describe the use of continental scale simulation modeling to explore how spatio-temporal changes along migratory flyways affect en-route migration success. We use an individually based, biophysical, mechanistic, bird migration model to simulate the movement of shorebirds in North America as a tool to study how such factors as drought and wetland loss may impact migratory success and modify migration patterns. Our model is driven by remote sensing and climate data and incorporates important landscape variables. The energy budget components of the model include resting, foraging, and flight, but presently predation is ignored. Results/Conclusions We illustrate our model by studying the spring migration of sandpipers through the Great Plains to their Arctic breeding grounds. Why many species of shorebirds have shown significant declines remains a puzzle. Shorebirds are sensitive to stop-over quality and spacing because of their need for frequent refueling stops and their opportunistic feeding patterns. We predict bird "hydrographs that is, stop-over frequency with latitude, that are in agreement with the literature. Mean stop-over durations predicted from our model for nominal cases also are consistent with the limited, but available data. For the shorebird species simulated, our model predicts that shorebirds exhibit significant plasticity and are able to shift their migration patterns in response to changing drought conditions. However, the question remains as to whether this behavior can be maintained over increasing and sustained environmental change. Also, the problem is much more complex than described by the current processes captured in our model. We have taken some important and interesting steps, and our model does demonstrate how local scale information about individual stop-over sites can be linked into the migratory flyway as a whole. We are incorporating additional, species specific, mechanistic processes to better reflect different climate change scenarios

Smith, James A.↗