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Merged Observatory Data Files (MODFs): an integrated observational data product supporting process-oriented investigations and diagnostics

A large and ever-growing body of geophysical information is measured in campaigns and at specialized observatories as a part of scientific expeditions and experiments. These collections of observed data include many essential climate variables (as defined by the Global Climate Observing System) but are often distinguished by a wide range of additional non-routine measurements that are designed to not only document the state of the environment but also the drivers that contribute to that state. These field data are used not only to further understand environmental processes through observation-based studies but also to provide baseline data to test model performance and to codify understanding to improve predictive capabilities. To address the considerable barriers and difficulty in utilizing these diverse and complex data for observation–model research, the Merged Observatory Data File (MODF) concept has been developed. A MODF combines measurements from multiple instruments into a single file that complies with well-established data format and metadata practices and has been designed to parallel the development of corresponding Merged Model Data Files (MMDFs). Using the MODF and MMDF protocols will facilitate the evolution of model intercomparison projects into model intercomparison and improvement projects by putting observation and model data “on the same page” in a timely manner. The MODF concept was developed especially for weather forecast model studies in the Arctic. The surprisingly complex process of implementing MODFs in that context refined the concept itself. Thus, this article explains the concept of MODFs by providing details on the issues that were revealed and resolved during that first specific implementation. Detailed instructions are provided on how to make MODFs, and this article can be considered a MODF creation manual.

54 ENVIRONMENTAL SCIENCES↗

A random unitary circuit model for black hole evaporation

Inspired by the Hayden-Preskill protocol for black hole evaporation, we consider the dynamics of a quantum many-body qudit system coupled to an external environment, where the time evolution is driven by the continuous limit of certain 2-local random unitary circuits. We study both cases where the unitaries are chosen with and without a conserved U(1) charge and focus on two aspects of the dynamics. First, we study analytically and numerically the growth of the entanglement entropy of the system, showing that two different time scales appear: one is intrinsic to the internal dynamics (the scrambling time), while the other depends on the system-environment coupling. In the presence of a U(1) conserved charge, we show that the entanglement follows a Page-like behavior in time: it begins to decrease in the middle stage of the “evaporation”, and decreases monotonically afterwards. Second, we study the time needed to retrieve information initially injected in the system from measurements on the environment qudits. Based on explicit numerical computations, we characterize such time both when the retriever has control over the initial configuration or not, showing that different scales appear in the two cases.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Entanglement phase structure of a holographic BCFT in a black hole background

We compute holographic entanglement entropy for subregions of a BCFT thermal state living on a nongravitating black hole background. The system we consider is doubly holographic and dual to an eternal black string with an embedded Karch-Randall brane that is parameterized by its angle. Entanglement islands are conventionally expected to emerge at late times to preserve unitarity at finite temperature, but recent calculations at zero temperature have shown such islands do not exist when the brane lies below a critical angle. When working at finite temperature in the context of a black string, we find that islands exist even when the brane lies below the critical angle. We note that although these islands exist when they are needed to preserve unitarity, they are restricted to a finite connected region on the brane which we call the atoll. Depending on two parameters — the size of the subregion and the brane angle — the entanglement entropy either remains constant in time or follows a Page curve. We discuss this rich phase structure in the context of bulk reconstruction.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

SPRUCE Vegetation Phenology in Experimental Plots from Phenocam Imagery, 2015-2022

This data set consists of PhenoCam data from the SPRUCE experiment from the beginning of whole ecosystem warming (Hanson et al. 2017) in August 2015 through March 31 of 2023, with start- and end-of-season phenological transition dates derived through the end of autumn 2022. Digital cameras, or phenocams, installed in each SPRUCE enclosure track seasonal variation in vegetation “greenness”, a proxy for vegetation phenology and associated physiological activity. Three separate regions of interest (ROIs) were defined for each camera field of view, corresponding to different vegetation types and demarcating (1) Picea trees (vegetation type EN, for evergreen needleleaf); (2) Larix trees (vegetation type DN, for deciduous needleleaf); and (3) the mixed shrub layer (vegetation type SH). This data set consists of three sets of data files: 3-day summary product files: One file for each camera and each ROI (i.e. vegetation type), characterizing vegetation color at a 3-day time step Contains 35 files in *.csv format inside a compressed (*.zip) file. Transition date file: Estimates “greenness rising” (spring) and “greenness falling” (autumn) transition dates derived from the smoothed daily green chromatic coordinate (GCC) values, for each camera and each ROI (i.e. vegetation type) Contains one file in *.csv format Snow flag files: Indicate days with snow on trees or snow on ground for each experimental enclosure Contains two files in *.csv format, one for snow on trees and one for snow on ground This data set consists of two sets of companion files: Accompanying HTML files show the 90th quantiles of the mean GCC plotted together with transition dates for each vegetation type and plot. Contains three files in HTML format, one for each vegetation type One additional file in HTML format with the transition dates plotted for each vegetation type, by year R files for processing Phenocam files and flags. Contains five files in R file (*.R) format in one compressed (*.zip) file User Note: All imagery is posted in near-real time to the PhenoCam Project web page (http://phenocam.sr.unh.edu/), where it is publicly available. Scroll to “spruce” in the Gallery or link directly to the 29 SPRUCE cameras at https://tinyurl.com/y7z5mau7. The data reported here are based on the complete camera record from SPRUCE and supersedes the previously released phenocam datasets (see Related Data Sets). The estimated transition dates for previously released datasets may differ slightly (in most cases, by ±3 days or less), because following standard PhenoCam processing protocols (Richardson et al. 2018, Scientific Data), smoothing and interpolation, outlier removal, and transition date estimation are always conducted using the full data record.

SPRUCE Experiment, Marcell Experimental Forest, Sp↗

SPRUCE Vegetation Phenology in Experimental Plots from Phenocam Imagery, 2015-2023

This data set consists of PhenoCam data from the SPRUCE experiment from the beginning of whole ecosystem warming (Hanson et al. 2017) in August 2015 through March 31 of 2024, with start- and end-of-season phenological transition dates derived through the end of autumn 2023. Digital cameras, or phenocams, installed in each SPRUCE enclosure track seasonal variation in vegetation “greenness”, a proxy for vegetation phenology and associated physiological activity. Three separate regions of interest (ROIs) were defined for each camera field of view, corresponding to different vegetation types and demarcating (1) Picea trees (vegetation type EN, for evergreen needleleaf); (2) Larix trees (vegetation type DN, for deciduous needleleaf); and (3) the mixed shrub layer (vegetation type SH). This data set consists of three sets of data files: (1) 3-day summary product files: One file for each camera and each ROI (i.e. vegetation type), characterizing vegetation color at a 3-day time step • Contains 36 files in *.csv format inside a compressed (*.zip) file. (2) Transition date file: Estimates “greenness rising” (spring) and “greenness falling” (autumn) transition dates derived from the smoothed daily green chromatic coordinate (GCC) values, for each camera and each ROI (i.e. vegetation type) • Contains one file in *.csv format (3) Snow flag files: Indicate days with snow on trees or snow on ground for each experimental enclosure • Contains two files in *.csv format, one for snow on trees and one for snow on ground This data set consists of two sets of companion files: (1) Accompanying HTML files show the 90th quantiles of the mean GCC plotted together with transition dates for each vegetation type and plot. • Contains three files in HTML format, one for each vegetation type • One additional file in HTML format with the transition dates plotted for each vegetation type, by year (2) R files for processing Phenocam files and flags. • Contains five files in R file (*.R) format in one compressed (*.zip) file User Note: All imagery is posted in near-real time to the PhenoCam Project web page (http://phenocam.sr.unh.edu/), where it is publicly available. Scroll to “spruce” in the Gallery or link directly to the 29 SPRUCE cameras at https://tinyurl.com/sprucecams. The data reported here are based on the complete camera record from SPRUCE and supersedes the previously released data inclusive of the 2015-2022 data (see Related Data Sets). The estimated transition dates for previously released datasets may differ slightly (in most cases, by ±3 days or less), because following standard PhenoCam processing protocols (Richardson et al. 2018, Scientific Data), smoothing and interpolation, outlier removal, and transition date estimation are always conducted using the full data record.

Spruce and Peatland Responses Under Changing Envir↗

SPRUCE Vegetation Phenology in Experimental Plots from PhenoCam Imagery, 2015-2024

This data set consists of PhenoCam data from the SPRUCE experiment from the beginning of whole ecosystem warming (Hanson et al. 2017) in August 2015 through March 31 of 2025 (2015-08-24 to 2025-03-31), with start- and end-of-season phenological transition dates derived through the end of autumn 2024. Digital cameras, or phenocams, installed in each SPRUCE enclosure track seasonal variation in vegetation “greenness”, a proxy for vegetation phenology and associated physiological activity. Three separate regions of interest (ROIs) were defined for each camera field of view, corresponding to different vegetation types and demarcating (1) Picea trees (vegetation type EN, for evergreen needleleaf); (2) Larix trees (vegetation type DN, for deciduous needleleaf); and (3) the mixed shrub layer (vegetation type SH). This data set consists of three sets of data files: (1) 3-day summary product files: One file for each camera and each ROI (i.e. vegetation type), characterizing vegetation color at a 3-day time step. • Contains 36 files in *.csv format inside a compressed (*.zip) file. (2) Transition date file: Estimates “greenness rising” (spring) and “greenness falling” (autumn) transition dates derived from the smoothed daily green chromatic coordinate (GCC) values, for each camera and each ROI (i.e., vegetation type). • Contains one file in *.csv format. (3) Snow flag files: Indicate days with snow on trees or snow on ground for each experimental enclosure. • Contains two files in *.csv format, one for snow on trees and one for snow on ground. This data set consists of two sets of companion files: (1) Accompanying HTML files show the 90th quantiles of the mean GCC plotted together with transition dates for each vegetation type and plot. • Contains three files in HTML format, one for each vegetation type. • One additional file in HTML format with the transition dates plotted for each vegetation type, by year. (2) R files for processing PhenoCam files and flags. • Contains five files in R file(*.R) format and the components of the phenocamr package (Version 1.1.4) used for calculating transition dates for 2015-2024. These are contained in a compressed (*.zip) file. User Note: All imagery is posted in near-real time to the PhenoCam Project web page (https://phenocam.nau.edu), where it is publicly available. Scroll to “spruce” in the Gallery or link directly to the 29 SPRUCE cameras at https://tinyurl.com/sprucecams. This data set is based on the complete camera record from SPRUCE and supersedes all previously released PhenoCam datasets (see Related Data Sets). The estimated transition dates for previously released datasets may differ slightly (in most cases, by ±3 days or less), because following standard PhenoCam processing protocols (Richardson et al. 2018, Scientific Data), smoothing and interpolation, outlier removal, and transition date estimation are always conducted using the full data record.

54 ENVIRONMENTAL SCIENCES↗

Secure boot, trusted boot and remote attestation for ARM TrustZone-based IoT Nodes

With the extensive application of IoT techniques, IoT devices have become ubiquitous in daily lives. Meanwhile, attacks against IoT devices have emerged to compromise IoT devices by tampering with system pre-installed programs or injecting new malware. To mitigate these attacks, integrity enforcement of IoT systems has been proposed. The integrity of an IoT device system includes load-time integrity and runtime integrity. In this paper, we design an IoT system based on ARM TrustZone to enforce the system integrity. First, we establish the root of trust and propose a hybrid booting approach consisting of both secure boot and trusted boot to enforce the system load-time integrity. Second, we investigate a paging-based process integrity measurement method to measure the NW processes and conduct remote attestation based on the measurement results ensuring the NW runtime process integrity. We implement an IoT prototype system on a NXP i.MX6Q SABRE SD development board to assess its feasibility. Finally, real-world experiment results demonstrate that our prototype introduces negligible performance overhead to the original system.

97 MATHEMATICS AND COMPUTING↗

Implementation of a Web Interface to Display Real-Time Statistics of a Dilution Refrigerator

The purpose of the project is to communicate with a Bluefors control unit and extract data. The Bluefors control unit is a piece of experimental equipment that measures various different data points in a dilution refrigerator and stores them. The goal was to access the control unit using the websockets library in Python. After accessing the control unit, the goal was to export the data to a web page in HTML/CSS. The tools that were used changed throughout the project. Python was used to communicate with the Bluefors unit via JSON requests and JSON objects, then the Python hosted its own websocket server to act as a proxy server to allow for the web page to access the data. This was done to bypass SSL verification. Then, the web page, which was created using JavaScript, React, Next.js, and NodeJS, accesses the proxy server to import the data from the dilution refrigerator and display the values in real time on the page.

Rasheed, Hammad↗

Assessing Multi-Dimensional Impacts of Achieving Sustainability Goals by Projecting the Sustainable Agriculture Matrix Into the Future

The concept of sustainability inherently spans multiple spatial scales, sectors, variables, and time horizons. This study links a recently developed method of assessing present-day agricultural sustainability across environmental, economic, and social dimensions with a process-based integrated assessment model, in order to allow forward-looking analysis of sustainability by region and scenario. The sustainable agriculture matrix estimates present-day agricultural sustainability at the national level using 18 indicator variables, of which this study estimates nine to the year 2100, using an enhanced version of the Global Change Analysis Model. Scenarios include a reference scenario, and scenarios that apply the following measures, both individually and in combination, that are thought to improve sustainability: yield intensification, transition toward more plant-based (“flexitarian”) diets, and economy-wide greenhouse gas emissions mitigation. The scenarios illustrate considerable complexity and tradeoffs inherent to efforts to improve agricultural sustainability in all regions globally. For example, yield intensification typically increases nitrogen pollution, flexitarian diets can reduce agricultural output, and greenhouse gas mitigation efforts may either increase deforestation or crowd out crop and livestock production due to consequent bioenergy demands. However, there is considerable inter-regional heterogeneity in the responses, and the importance of such secondary responses also differs by region. The analysis and post-processing methods developed in this study allow quantification and visualization of the absolute and relative magnitude of the tradeoffs between agricultural sustainability indicator variables across regions, time periods, and scenarios.

54 ENVIRONMENTAL SCIENCES↗

Interconnection Cost Analysis in ISO-New England

Electric transmission system operators (ISOs, RTOs, or utilities) require new large generators seeking to connect to the grid to undergo a series of impact studies before they can be built. This process establishes what new transmission equipment or upgrades may be needed before a project can connect to the system and assigns the costs of that equipment. Berkeley Lab has collected interconnection cost data for 194 projects in New England from interconnection studies performed between 2010 and 2021. Project-level cost summary data are available for download on this page. We find: -Interconnection costs have grown over time, especially for projects that withdraw. -Interconnection costs are highest for onshore wind, followed by solar and storage. Natural gas and offshore wind projects tend to cost less to interconnect, in comparison. -Economies of scale exist for solar and possibly storage projects, but not for other resource types. -Wind and solar projects requesting capacity network resource interconnection service have higher interconnection costs, despite being evaluated using the same interconnection standard in the analyzed studies. -Low and high interconnection costs can be found throughout the ISO-NE footprint. -Costs are split fairly evenly between investments at the point of interconnection and within the broader network for active and withdrawn projects, while complete projects incur most costs at the point of interconnection.

24 POWER TRANSMISSION AND DISTRIBUTION↗

A daily, 250 m and real-time gross primary productivity product (2000–present) covering the contiguous United States

Abstract. Gross primary productivity (GPP) quantifies the amount of carbon dioxide (CO2) fixed by plants through photosynthesis. Although as a key quantity of terrestrial ecosystems, there is a lack of high-spatial-and-temporal-resolution, real-time and observation-based GPP products. To address this critical gap, here we leverage a state-of-the-art vegetation index, near-infrared reflectance of vegetation (NIRV), along with accurate photosynthetically active radiation (PAR), to produce a SatelLite Only Photosynthesis Estimation (SLOPE) GPP product for the contiguous United States (CONUS). Compared to existing GPP products, the proposed SLOPE product is advanced in its spatial resolution (250 m versus >500 m), temporal resolution (daily versus 8 d), instantaneity (latency of 1 d versus >2 weeks) and quantitative uncertainty (on a per-pixel and daily basis versus no uncertainty information available). These characteristics are achieved because of several technical innovations employed in this study: (1) SLOPE couples machine learning models with MODIS atmosphere and land products to accurately estimate PAR. (2) SLOPE couples highly efficient and pragmatic gap-filling and filtering algorithms with surface reflectance acquired by both Terra and Aqua MODIS satellites to derive a soil-adjusted NIRV (SANIRV) dataset. (3) SLOPE couples a temporal pattern recognition approach with a long-term Cropland Data Layer (CDL) product to predict dynamic C4 crop fraction. Through developing a parsimonious model with only two slope parameters, the proposed SLOPE product explains 85 % of the spatial and temporal variations in GPP acquired from 49 AmeriFlux eddy-covariance sites (324 site years), with a root-mean-square error (RMSE) of 1.63 gC m−2 d−1. The median R2 over C3 and C4 crop sites reaches 0.87 and 0.94, respectively, indicating great potentials for monitoring crops, in particular bioenergy crops, at the field level. With such a satisfactory performance and its distinct characteristics in spatiotemporal resolution and instantaneity, the proposed SLOPE GPP product is promising for biological and environmental research, carbon cycle research, and a broad range of real-time applications at the regional scale. The archived dataset is available at https://doi.org/10.3334/ORNLDAAC/1786 (download page: https://daac.ornl.gov/daacdata/cms/SLOPE_GPP_CONUS/data/, last access: 20 January 2021) (Jiang and Guan, 2020), and the real-time dataset is available upon request.

54 ENVIRONMENTAL SCIENCES↗

Mass spectrometry and spectroscopic characterization of a tetrameric photosystem I supercomplex from Leptolyngbya ohadii , a desiccation-tolerant cyanobacterium

Cyanobacteria inhabiting desert biological soil crusts face the harsh conditions of the desert. They evolved a suite of strategies toward desiccation-hydration cycles mixed with high light irradiations, etc. In this study we purified and characterized the structure and function of Photosystem I (PSI) from Leptolyngbya ohadii, a desiccation-tolerant desert cyanobacterium. We discovered that PSI forms tetrameric (PSI-Tet) aggregate. We investigated it by using sucrose density gradient centrifugation, clear native PAGE, high performance liquid chromatography, mass spectrometry (MS), time-resolved fluorescence (TRF) and time-resolved transient absorption (TA) spectroscopy. MS analysis identified the presence of two PsaB and two PsaL proteins in PSI-Tet and uniquely revealed that PsaLs are N-terminally acetylated in contrast to non-modified PsaL in the trimeric PSI from Synechocystis sp. PCC 6803. Chlorophyll (Chl) a fluorescence decay profiles of the PSI-Tet performed at 77 K revealed two emission bands at ∼690 nm and 725 nm with the former appearing only at early delay time. The main fluorescence emission peak, associated with emission from the low energy Chls a, decays within a few nanoseconds. TA studies demonstrated that the 725 nm emission band is associated with low energy Chls a with absorption band clearly resolved at ∼710 nm at 77 K. As a result, our work suggests that the heterogenous composition of PsaBs and PsaL in PSI-Tet is related with the adaptation mechanisms needed to cope with stressful conditions under which this bacterium naturally grows.

59 BASIC BIOLOGICAL SCIENCES↗

Scientific program for the Forward Physics Facility

The recent direct detection of neutrinos at the LHC has opened a new window on high-energy particle physics and highlighted the potential of forward physics for groundbreaking discoveries. In the last year, the physics case for forward physics has continued to grow, and there has been extensive work on defining the Forward Physics Facility and its experiments to realize this physics potential in a timely and cost-effective manner. Following a 2-page Executive Summary, we first present the status of the FPF, beginning with the FPF’s unique potential to shed light on dark matter, new particles, neutrino physics, QCD, and astroparticle physics. We then summarize the current designs for the Facility and its experiments, FASER2, FASER 2, FORMOSA, and FLArE.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

LSST Scheduler & Progress Monitoring

The NSF-DOE Vera C. Rubin Observatory scheduling team is providing a set of tools for monitoring the scheduler and progress on the Legacy Survey of Space and Time (LSST). These slides provide an overview of available pages and assorted figures on them: the night summary provides an overview of a completed night of observing, including maps of exposures and plots of data quality metrics; the pre-night briefing, an analysis of a simulation of an upcoming night; and a handful of figures that provide information on long-term progress toward LSST survey goals.

H.Neilsen, Eric, Jr. [Fermilab] (ORCID:00000002735↗

Xyce™ Parallel Electronic Simulator (V.7.9) Release Notes

The Xyce™ Parallel Electronic Simulator has been written to support the simulation needs of Sandia National Laboratories’ electrical designers. Xyce™ is a SPICE-compatible simulator with the ability to solve extremely large circuit problems on large-scale parallel computing platforms, but also includes support for most popular parallel and serial computers. For up-to-date information not available at the time these notes were produced, please visit the Xyce™ web page at http://xyce.sandia.gov.

42 ENGINEERING↗

The ELISA Detectability and Potency of Pegfilgrastim Decrease in Physiological Conditions: Key Roles for Aggregation and Individual Variability

PEGylated recombinant human granulocyte colony stimulating factor (pegflgrastim) is used clinically to accelerate immune reconstitution following chemotherapy and is being pursued for biosimilar development. One challenge to overcome in pegflgrastim biosimilar development is establishing pharmacokinetic (PK) similarity, which is partly due to the degree of PK variability. We herein report that commercially available G-CSF and PEG ELISA detection kits have different capacities to detect pegflgrastim aggregates that rapidly form in vitro in physiological conditions. These aggregates can be observed using SDS-PAGE, size-exclusion chromatography, dynamic light scattering, and real-time NMR analysis and are associated with decreased bioactivity as reflected by reduced drug-induced cellular proliferation and STAT3 phosphorylation. Furthermore, individual variability in the stability and detectability of pegflgrastim in human sera is also observed. Pegflgrastim levels display marked subject variability in sera from healthy donors incubated at 37°C. The stability patterns of pegflgrastim closely match the stability patterns of flgrastim, consistent with a key role for pegflgrastim’s G-CSF moiety in driving formation of inactive aggregates. Taken together, our results indicate that individual variability and ELISA specificity for inactive aggregates are key factors to consider when designing and interpreting studies involving the measurement of serum pegflgrastim concentrations.

59 BASIC BIOLOGICAL SCIENCES↗

The updated DESGW processing pipeline for the third LIGO/VIRGO observing run

The DESGW group seeks to identify electromagnetic counterpartsof gravitational wave events seen by the LIGO-VIRGO network, such as thoseexpected from binary neutron star mergers or neutron star- black hole mergers.DESGW was active throughout the first two LIGO observing seasons, followingup several binary black hole mergers and the first binary neutron star merger,GW170817. We describe the modifications to the observing strategy generationand image processing pipeline between the second (ending in August 2017)and third (beginning in April 2019) LIGO observing seasons. The modifica-tions include a more robust observing strategy generator, further parallelizationof the image reduction software and dierence imaging processing pipeline,data transfer streamlining, and a web page listing identified counterpart candi-dates that updates in real time. Taken together, the additional parallelizationsteps enable us to identify potential electromagnetic counterparts within fullycalibrated search images in less than one hour, compared to the 3-5 hours itwould typically take during the first two seasons. These performance improve-ments are critical to the entire EM followup community, as rapid identification(or rejection) of candidates enables detailed spectroscopic followup by multipleinstruments as soon as possible, leading to more information about the environ-ment immediately following such gravitational wave events.

Herner, Kenneth R.↗

Quantum fragmentation in the extended quantum breakdown model

We introduce a one-dimensional (1D) extended quantum breakdown model comprising a fermionic and a spin degree of freedom per site, and featuring a spatially asymmetric breakdown-type interaction between the fermions and spins. Furthermore, our model resembles the breakdown process of particles incident into a cloud chamber with nonzero quantum amplitudes of both exciting and not exciting the local vapor atoms. We analytically show that, in the absence of any magnetic field for the spins, the model exhibits Hilbert space fragmentation within each symmetry sector into exponentially many Krylov subspaces and hence displays nonthermal dynamics. Here, we demonstrate that the fragmentation naturally occurs in an entangled basis and thus provides an example of “quantum fragmentation.” Besides establishing the nature of fragmentation analytically, we also study the long-time behavior of the entanglement entropy and its deviation from the expected Page value as a probe of ergodicity in the system. Upon introducing a magnetic field for the spins, most of the Krylov subspaces merge and the model becomes chaotic. Finally, we study the effects of strong randomness on the system and observe behavior similar to that of many-body localized systems.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗