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At least 37 records · Page 2

Selective extinction of marine plankton at the end of the Mesozoic era: The fossil and stable isotope record

Floral, faunal and stable isotope evidence in a continuous sequence of latest Cretaceous and earliest Tertiary shallow water marine deposits in the Mangyshlak Peninsula, USSR suggest severe environmental changes at the Cretaceous/Tertiary (K/T) boundary. Time frame is provided by nanno, micro and macrofossils as well as by magnetic stratigraphy and an iridium spike. Oxygen isotopic analyses of the bulk sediments, composed of nanno and microplankton skeletal remains, show a sharp positive spike at the K/T boundary. This shift is primarily attributed to severe cooling possibly accompanied by increased salinities of the surface mixed layer. Floral and faunal extinctions were selective, affecting approximately 90 percent of the warm water calcareous phyto and zooplankton genera in the Tethyan-Paratethyan regions. These highly diverse taxa with many endemic representatives were at the peak of their evolutionary development. Geologic evidence indicates that the terminal Cretaceous temperature decline was coeval with widespread and intense volcanic activity which reached a peak at the close of the Mesozoic Era. Increased acidity temporarily prohibited calcite nucleation of the surface dwelling warm-water plankton. Superimposed upon decreased alkalinity, severe and rapid climatic changes caused the extinction of calcareous phyto and zooplankton.

Herman, Y.↗

Forward Modeling of Carbonate Proxy Data from Planktonic Foraminifera using Oxygen Isotope Tracers in a Global Ocean Model

The distribution and variation of oxygen isotopes in seawater are calculated using the Goddard Institute for Space Studies global ocean model. Simple ecological models are used to estimate the planktonic foraminiferal abundance as a function of depth, column temperature, season, light intensity, and density stratification. These models are combined to forward model isotopic signals recorded in calcareous ocean sediment. The sensitivity of the results to the changes in foraminiferal ecology, secondary calcification, and dissolution are also examined. Simulated present-day isotopic values for ecology relevant for multiple species compare well with core-top data. Hindcasts of sea surface temperature and salinity are made from time series of the modeled carbonate isotope values as the model climate changes. Paleoclimatic inferences from these carbonate isotope records are strongly affected by erroneous assumptions concerning the covariations of temperature, salinity, and delta (sup 18)O(sub w). Habitat-imposed biases are less important, although errors due to temperature-dependent abundances can be significant.

Schmidt, Gavin A.↗

The Plankton, Aerosol, Cloud, Ocean Ecosystem (PACE) Mission: Status, Science, Advances

The PACE mission represents NASA’s next investment in ocean color, cloud, and aerosol data records to enable continued and advanced insight into oceanographic and atmospheric responses to Earth’s changing climate. The Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission represents NASA’s next investment in satellite ocean color and the study of Earth’s ocean-atmosphere system, enabling new insights into oceanographic and atmospheric responses to Earth's changing climate. PACE objectives include extending systematic cloud, aerosol, and ocean biological and biogeochemical data records, making essential ocean color measurements to further understand marine carbon cycles, food web processes, and ecosystem responses to a changing climate, and improving knowledge of how aerosols influence ocean ecosystems and, conversely, how ocean ecosystems and photochemical processes affect the atmosphere. PACE objectives also encompass management of fisheries, large freshwater bodies, and air and water quality and reducing uncertainties in climate and radiative forcing models of the Earth system. PACE observations will provide information on radiative properties of land surfaces and characterization of the vegetation and soils that dominate their reflectance. The primary PACE instrument is a spectrometer that spans the ultraviolet to shortwave infrared, with a ground sample distance of 1-km at nadir. This payload is complemented by two multi-angle polarimeters with spectral ranges that span the visible to near-infrared region. Scheduled for launch in late 2022-to-early 2023, the PACE observatory will enable significant advances in the study of Earth’s biogeochemistry, carbon cycle, clouds, hydrosols, and aerosols in the ocean-atmosphere-land system. Here, we present an overview of the PACE mission, including its developmental history, science objectives, instrument payload, observatory characteristics, and data products.

P Jeremy Werdell↗

The NASA Plankton, Aerosol, Cloud, Ocean Ecosystem (PACE) Mission: an Emerging Era of Global, Hyperspectral Earth System Remote Sensing

The Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission represents NASA's next investment in satellite ocean color and the study of Earth's ocean-atmosphere system, enabling new insights into oceanographic and atmospheric responses to Earth's changing climate. PACE objectives include extending systematic cloud, aerosol, and ocean biological and biogeochemical data records, making essential ocean color measurements to further understand marine carbon cycles and ecosystem responses to a changing climate, and improving knowledge of how aerosols influence ocean ecosystems and, conversely, how ocean ecosystems and photochemical processes affect the atmosphere. PACE objectives also encompass management of fisheries, large freshwater bodies, and water quality and reducing uncertainties in climate and radiative forcing models of the Earth system. PACE observations will also provide information on radiative properties of land surfaces and characterization of the vegetation and soils that dominate their reflectance. The primary PACE instrument - the Ocean Color Instrument (OCI) - is a hyperspectral imaging radiometer that spans the ultraviolet to shortwave infrared, with a ground sample distance of 1-kilometer at nadir. This includes continuous collection of spectra from 340 to 890 nanometers in 5-nanometer steps. The PACE payload is complemented by two multi-angle polarimeters with spectral ranges that span the visible to near-infrared region. Scheduled for launch in late 2022-to-early 2023, the PACE observatory will enable significant advances in the study of Earth's biogeochemistry, carbon cycle, clouds, hydrosols, and aerosols in the ocean-atmosphere system. We present a brief overview of the PACE mission, followed by a detailed discussion of the capabilities and design concept of OCI.

Passive Remote Sensing↗

Plankton, Aerosol, Cloud, Ocean Ecosystem (PACE) Mission Integration and Testing

This paper describes the plans, flows, key facilities, components and equipment necessary to fully integrate, functionally test and qualify the Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) Observatory. PACE is currently in the design phase of mission implementation. It is scheduled to launch in 2022, extending and improving NASA's twenty-year record of satellite observations of global ocean biology, aerosols and clouds. PACE will advance the assessment of ocean health by measuring the distribution of phytoplankton, which are small plants and algae that sustain the marine food web. It will also continue systematic records of key atmospheric variables associated with air quality and the Earth's climate. The PACE observatory is comprised of the spacecraft and three instruments, an Ocean Color Instrument (OCI) and two polarimeters, the Hyper-Angular Rainbow Polarimeter 2 (HARP2) and the Spectro-Polarimeter for Exploration (SPEXone). The spacecraft and the OCI, which is the primary instrument, are developed and integrated at the NASA Goddard Space Flight Center (GSFC). The OCI is a hyper-spectral scanning (HSS) radiometer designed to measure spectral radiances from the ultraviolet to shortwave infrared (SWIR) to enable advanced ocean color and heritage cloud and aerosol particle science. The HARP2 and SPEXone are secondary instruments on the PACE observatory, acquired outside of GSFC. The Hyper-Angular Rainbow Polarimeter instrument (HARP2) is a wide swath imaging polarimeter that is capable of characterizing atmospheric aerosols for purposes of sensor atmospheric correction as well as atmospheric science. The SPEXone provides atmospheric aerosol and cloud data at high temporal and spatial resolution. This paper will focus on the Integration and Test (I&T) activities for the PACE mission at NASA GSFC. This I&T phase consists of mechanical, electrical and thermal integration and test of all the spacecraft subsystems and the integration of the instruments with the spacecraft. The PACE observatory environmental tests include electromagnetic interference (EMI)/electromagnetic compatibility (EMC), vibration, acoustics, shock, thermal balance, thermal vacuum, mass properties and center of gravity. This paper will also discuss the observatory shipment to the launch site as well as the launch site processing.

Petro, Susanna↗

The NASA Plankton, Aerosol, Cloud, Ocean Ecosystem (PACE) Mission: an Emerging Era of Global, Hyperspectral Earth System Remote Sensing

The Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission represents NASA's next investment in satellite ocean color and the study of Earth's ocean-atmosphere system, enabling new insights into oceanographic and atmospheric responses to Earth's changing climate. PACE objectives include extending systematic cloud, aerosol, and ocean biological and biogeochemical data records, making essential ocean color measurements to further understand marine carbon cycles and ecosystem responses to a changing climate, and improving knowledge of how aerosols influence ocean ecosystems and, conversely, how ocean ecosystems and photochemical processes affect the atmosphere.

Gorman, Eric T.↗

The NASA Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) Mission: An Emerging Era of Global, Hyperspectral Earth System Remote Sensing

The Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission represents NASA’s next investment in satellite ocean color and the study of Earth’s ocean-atmosphere system, enabling new insights into oceanographic and atmospheric responses to Earth's changing climate. PACE objectives include extending systematic cloud, aerosol, ocean biological and biogeochemical data records, making essential ocean color measurements to further understand marine carbon cycles and ecosystem responses to a changing climate, as well as improving knowledge of how aerosols influence ocean ecosystems and, conversely, how ocean ecosystems and photochemical processes affect the atmosphere. PACE objectives also encompass management of fisheries, large freshwater bodies, and water quality and reducing uncertainties in climate and radiative forcing models of the Earth system. PACE observations will also provide information on radiative properties of land surfaces and characterization of the vegetation and soils that dominate their reflectance. The primary PACE instrument – the Ocean Color Instrument (OCI) – is a hyperspectral imaging radiometer that spans the ultraviolet to shortwave infrared, with a ground sample distance of 1-km at nadir. This includes continuous collection of spectra from 340 nm to 890 nm in 5 nm steps. The PACE payload is complemented by two multi-angle polarimeters with spectral ranges that span the visible to near-infrared region. Scheduled for launch in late 2022-to-early 2023, the PACE observatory will enable significant advances in the study of Earth’s biogeochemistry, carbon cycle, clouds, hydrosols, and aerosols in the ocean-atmosphere system. We present a brief overview of the PACE mission, followed by a discussion of the capabilities and design concept of OCI.

hyperspectral radiometer↗

Implementing Delay/Disruption Tolerant Networking for NASA’s Plankton, Aerosol, Clouds, ocean Ecosystem (PACE) Mission

NASA’s Plankton, Aerosol, Clouds, ocean Ecosystem (PACE) mission will be the first NASA science mission to use Delay/Disruption Tolerant Networking (DTN) for routine operations. The DTN Bundle Protocol (BP) is being integrated into the core Flight Software (cFS) for the transfer of house-keeping files. DTN nodes will also be integrated into the Near Space Network (NSN) ground stations and the PACE Mission Operations Center. This paper will describe the DTN implementations, the PACE DTN operations concept and how this mission is a significant step towards the Solar System Internet.

dtn↗

The CHROMA Cloud-Top Pressure Retrieval Algorithm for the Plankton, Aerosol, Cloud, Ocean Ecosystem (PACE) Satellite Mission

This paper provides the theoretical basis and simulated retrievals for the Cloud Height Retrieval from O2 Molecular Absorption (CHROMA) algorithm. Simulations are performed for the Ocean Color Instrument (OCI), which is the primary payload on the forthcoming NASA Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission, and the Ocean Land Colour Instrument (OLCI) currently flying on the Sentinel 3 satellites. CHROMA is a Bayesian approach which simultaneously retrieves cloud optical thickness (COT), cloud-top pressure and height (CTP and CTH respectively), and (with a significant prior constraint) surface albedo. Simulated retrievals suggest that the sensor and algorithm should be able to meet the PACE mission goal for CTP error, which is ±60 mb for 65 % of opaque (COT ≥3) single-layer clouds on global average. CHROMA will provide pixel-level uncertainty estimates, which are demonstrated to have skill at telling low-error situations from high-error ones. CTP uncertainty estimates are well-calibrated in magnitude, although COT uncertainty is overestimated relative to observed errors. OLCI performance is found to be slightly better than OCI overall, demonstrating that it is a suitable proxy for the latter in advance of PACE's launch. CTP error is only weakly sensitive to correct cloud phase identification or assumed ice crystal habit/roughness. As with other similar algorithms, for simulated retrievals of multi-layer systems consisting of optically thin cirrus clouds above liquid clouds, retrieved height tends to be underestimated because the satellite signal is dominated by the optically thicker lower layer. Total (liquid plus ice) COT also becomes underestimated in these situations. However, retrieved CTP becomes closer to that of the upper ice layer for ice COT ≈3 or higher.

PACE↗

Life After Launch: A Snapshot of the First 6 Months of NASA’s Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) Mission

The NASA Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) mission launched from Kennedy Space Center in the early morning of February 8, 2024. Just 63 days later, data from NASA’s newest Earth-observing satellite became available to the public. These data will extend and improve upon NASA’s 20+ years of global satellite observation of our living oceans, atmospheric aerosols, and cloud and initiate an advanced set of climate-relevant data records. Ultimately, PACE is the first mission to provide daily, global measurements that will enable prediction of the “boom-bust” cycle of fisheries, the appearance of harmful algae, and other factors that affect commercial and recreational industries. PACE also observes clouds and tiny airborne particles known as aerosols that influence air quality and absorb and reflect sunlight, thus warming and cooling the atmosphere. In the months since launch and initial data release, the PACE Project pursued instrument temporal and system vicarious calibrations, executed cross-instrument comparisons, conducted performance assessments, explored synergies with other missions, and released advanced science data products. In parallel, the PACE Validation Science Team left for the field and the Post-launch Airborne eXperiment (PACE-PAX) prepared for its mission. And, most importantly, preliminary science results were realized. Here, we present a snapshot of these activities and their impacts and outcomes, encompassing the first half year of the PACE mission.

PACE↗

ToF-SIMS spectral data analysis of Paenibacillus sp. 300A biofilms and planktonic cells

Analysis of bacterial biofilms is particularly challenging and important with diverse applications from systems biology to biotechnology. Among the variety of techniques that have been applied, time-of-flight secondary ion mass spectrometry (ToF-SIMS) has many promising features in studying the surface characteristics of biofilms. ToF-SIMS offers high spatial resolution and high mass accuracy, which permit surface sensitive analysis of biofilm components. Thus, ToF-SIMS provides a powerful solution to addressing the challenge of bacterial biofilm analysis. This dataset covers ToF-SIMS analysis of Paenibacillus sp. 300A (300A) isolated from the Hanford site in Richland, WA. The strain is known to have metal and sulfur reducing properties and can be used for bioremediation, wastewater treatment, bioengineering and technology development. There is a current need to identify small molecules and fragments produced from bacterial biofilms. Static ToF-SIMS spectra of 300A were obtained using an IONTOF TOF-SIMS V instrument equipped with a 25 keV Bi 3 + metal ion gun. Identified molecules and molecular fragments are compared against known biological databases and the reported peaks have at least 65 ppm mass accuracy. These molecules range from lipids and fatty acids to flavonoids, quinolones, and other naturally occurring organic compounds. It is anticipated that the spectral identification of key peaks will assist detection of metabolites, extracellular polymeric substance molecules like polysaccharides, and biologically relevant small molecules using ToF-SIMS in future surface and interface research of bacterial biofilms.

Biofilms↗

Plankton

Grazing and exclusion of marine animals by overconcentration of phytoplankton

PLANKTON↗

Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton

ABSTRACT Metagenomics is a powerful method for interpreting the ecological roles and physiological capabilities of mixed microbial communities. Yet, many tools for processing metagenomic data are neither designed to consider eukaryotes nor are they built for an increasing amount of sequence data. EukHeist is an automated pipeline to retrieve eukaryotic and prokaryotic metagenome-assembled genomes (MAGs) from large-scale metagenomic sequence data sets. We developed the EukHeist workflow to specifically process large amounts of both metagenomic and/or metatranscriptomic sequence data in an automated and reproducible fashion. Here, we applied EukHeist to the large-size fraction data (0.8–2,000 µm) from Tara Oceans to recover both eukaryotic and prokaryotic MAGs, which we refer to as TOPAZ (Tara Oceans Particle-Associated MAGs). The TOPAZ MAGs consisted of >900 environmentally relevant eukaryotic MAGs and >4,000 bacterial and archaeal MAGs. The bacterial and archaeal TOPAZ MAGs expand upon the phylogenetic diversity of likely particle- and host-associated taxa. We use these MAGs to demonstrate an approach to infer the putative trophic mode of the recovered eukaryotic MAGs. We also identify ecological cohorts of co-occurring MAGs, which are driven by specific environmental factors and putative host-microbe associations. These data together add to a number of growing resources of environmentally relevant eukaryotic genomic information. Complementary and expanded databases of MAGs, such as those provided through scalable pipelines like EukHeist, stand to advance our understanding of eukaryotic diversity through increased coverage of genomic representatives across the tree of life. IMPORTANCE Single-celled eukaryotes play ecologically significant roles in the marine environment, yet fundamental questions about their biodiversity, ecological function, and interactions remain. Environmental sequencing enables researchers to document naturally occurring protistan communities, without culturing bias, yet metagenomic and metatranscriptomic sequencing approaches cannot separate individual species from communities. To more completely capture the genomic content of mixed protistan populations, we can create bins of sequences that represent the same organism (metagenome-assembled genomes [MAGs]). We developed the EukHeist pipeline, which automates the binning of population-level eukaryotic and prokaryotic genomes from metagenomic reads. We show exciting insight into what protistan communities are present and their trophic roles in the ocean. Scalable computational tools, like EukHeist, may accelerate the identification of meaningful genetic signatures from large data sets and complement researchers’ efforts to leverage MAG databases for addressing ecological questions, resolving evolutionary relationships, and discovering potentially novel biodiversity.

59 BASIC BIOLOGICAL SCIENCES↗

Chemotaxonomic patterns in intracellular metabolites of marine microbial plankton

Most biological diversity on Earth is contained within microbial communities. In the ocean, these communities dominate processes related to carbon fixation and nutrient recycling. Yet, specific factors that determine community composition and metabolic activity are difficult to resolve in complex microbial populations, complicating predictions of microbial processes in a changing ocean. Microbial metabolism generates small organic molecules that reflect both the biochemical and physiological diversity as well as the taxonomic specificity of these biological processes. These small molecules serve as the conduit for taxon-specific signaling and exchange. Here, we use liquid chromatography-mass spectrometry (LC-MS)-based metabolomics to taxonomically categorize 111 metabolites that include small molecules in central and secondary metabolism across 42 taxa representing numerically dominant and metabolically important lineages of microbial autotrophs and heterotrophs. Patterns in metabolite presence-absence broadly reflected taxonomic lineages. A subset of metabolites that includes osmolytes, sulfur-containing metabolites, sugars, and amino acid derivatives provided chemotaxonomic information among phytoplankton taxa. A variety of phytohormones and signaling molecules were predominantly found in the heterotrophic bacteria and archaea, expanding knowledge of metabolites implicated in modulating interactions between microbes. This chemotaxonomic inventory of marine microbial metabolites is a key step in deciphering metabolic networks that influence ocean biogeochemical cycles.

54 ENVIRONMENTAL SCIENCES↗

Dye laser remote sensing of marine plankton

Dye laser, emitting four wavelengths sequentially in time, has been incorporated into helicopter-borne lidar flight package, for performing studies of laser-induced fluorescence of chlorophyll A in algae. Data obtained by multicolor lidar technique can provide water-resource management with rapid-access wide-area coverage of the impact of various environmental factors for any body of water.

Mumola, P. B.↗