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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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Genomics-enabled analysis of specialized metabolism in bioenergy crops: Current progress and challenges

Plants produce a staggering diversity of specialized small molecule metabolites that play vital roles in mediating environmental interactions and stress adaptation. This chemical diversity derives from dynamic biosynthetic pathway networks that are often species-specific and operate under tight spatiotemporal and environmental control. A growing divide between demand and environmental challenges in food and bioenergy crop production have intensified research on these complex metabolite networks and their contribution to crop fitness. High-throughput omics technologies provide access to ever-increasing data resources for investigating plant metabolism. However, the efficiency of using such system-wide data to decode the gene and enzyme functions controlling specialized metabolism has remained limited; due largely to the recalcitrance of many plants to genetic approaches and the lack of ‘user-friendly’ biochemical tools for studying the diverse enzyme classes involved in specialized metabolism. With emphasis on terpenoid metabolism in the bioenergy crop switchgrass as an example, this review aims to illustrate current advances and challenges in the application of DNA synthesis and synthetic biology tools for accelerating the functional discovery of genes, enzymes and pathways in plant specialized metabolism. These technologies have accelerated knowledge development on the biosynthesis and physiological roles of diverse metabolite networks across many ecologically and economically important plant species and can provide resources for application to precision breeding and natural product metabolic engineering.

59 BASIC BIOLOGICAL SCIENCES↗

AFM Special Issue Summary - Integrating Surface Flux with Boundary Layer Measurements

To help bridge science topics related to land-atmosphere interactions, we organized a virtual special issue in this journal (Agricultural and Forest Meteorology [AFM]) entitled, “Land-Atmosphere Interactions: Integrating Surface Flux with Boundary Layer Measurements.” The motivation for the special issue was driven by existing disciplinary barriers between research areas that all address land-atmosphere interactions. In particular, it addressed research silos between those who study features of the land surface, surface fluxes (including water, energy, and trace gases), atmospheric boundary layer growth and thermodynamics, and atmospheric composition and aerosols. The special issue sought to bring these communities together to integrate multiple observations across the soil-vegetation-atmosphere continuum with the aim of 1) improving broader understanding of land-atmosphere interactions, feedbacks, and coupling, 2) fostering new collaborations between atmospheric and surface flux scientists, and 3) identifying new paths for integrative research. In this report we provide an overview and synthesis of the special issue.

58 GEOSCIENCES↗

Genome-scale modelling of the primary-specialized metabolism interface

Environmental challenges and development require plants to reallocate resources between primary and specialized metabolites to survive. Genome-scale metabolic models, which map carbon flux through metabolic pathways, are a valuable tool in the study of tradeoffs that arise at this interface. Due to annotation gaps, models that characterize all the enzymatic steps in individual specialized pathways and their linkages to each other and to central carbon metabolism are difficult to construct. Recent studies have successfully curated subsystems of specialized metabolism and characterized the interfaces where flux is diverted to the precursors of glucosinolates, terpenes, and anthocyanins. Although advances in metabolite profiling can help to constrain models at this interface, quantitative analysis remains challenging because of the different timescales on which specialized metabolites from constitutive and reactive pathways accumulate.

59 BASIC BIOLOGICAL SCIENCES↗

De novo design of proteins housing excitonically coupled chlorophyll special pairs

Natural photosystems couple light harvesting to charge separation using a ‘special pair’ of chlorophyll molecules that accepts excitation energy from the antenna and initiates an electron-transfer cascade. To investigate the photophysics of special pairs independently of the complexities of native photosynthetic proteins, and as a first step toward creating synthetic photosystems for new energy conversion technologies, we designed C 2 -symmetric proteins that hold two chlorophyll molecules in closely juxtaposed arrangements. X-ray crystallography confirmed that one designed protein binds two chlorophylls in the same orientation as native special pairs, whereas a second designed protein positions them in a previously unseen geometry. Spectroscopy revealed that the chlorophylls are excitonically coupled, and fluorescence lifetime imaging demonstrated energy transfer. The cryo-electron microscopy structure of a designed 24-chlorophyll octahedral nanocage with a special pair on each edge closely matched the design model. The results suggest that the de novo design of artificial photosynthetic systems is within reach of current computational methods.

59 BASIC BIOLOGICAL SCIENCES↗

Perceived Costs and Benefits of ICON Science and Foundational Documents associated with “Integrated, Coordinated, Open, and Networked (ICON) Science to Advance the Geosciences: Introduction and Synthesis of a Special Collection of Commentary Articles"

This data package is associated with the publication "Integrated, Coordinated, Open, and Networked (ICON) Science to Advance the Geosciences: Introduction and Synthesis of a Special Collection of Commentary Articles" in Earth and Space Science (Goldman et al. 2022; https://doi.org/10.1029/2021EA002099). The manuscript is an introductory article for a special collection of commentary articles across 19 geoscience disciplines that explore the challenges and opportunities associated with the use of ICON science principles. These principles focus on research intentionally designed to be Integrated, Coordinated, Open, and Networked (ICON) with the goal of maximizing mutual benefit (among stakeholders) and cross-system transferability of science outcomes. This data package contains data, figures, and R scripts associated with the cost/benefit analysis presented in the manuscript. The writing teams involved in the special collection placed each letter of ICON on a plot with perceived cost on one axis and perceived benefit on the other to summarize their perceptions of pursuing each principle of ICON science. These data were subsequently quantified and analyzed. Files are saved as .csv, .R, and .pdf. This data package also contains (1) the public foundational and instructional documents that enabled the crowdsourced creation of the special collection; (2) file-level metadata (flmd) that lists each file in the data package with a description; (3) data dictionary (dd) that defines column headers that appear in csv files. Files are saved as .pdf and .csv.

54 ENVIRONMENTAL SCIENCES↗

Supporting Special Values in ZFP

This white paper outlines potential approaches to supporting special values in the ZFP numerical compressor without breaking backwards compatibility. Other than infinities and NaNs, special values are often used to indicate the absence of data, where no value is defined, for example by designating finite but extreme “fill values” as special. Such fill values are commonly used in earth system science, among other applications, but if left as is during compression lead to artifacts and loss of precision in nearby true values. Multiple candidate solutions that would allow ZFP to recognize special values are here proposed. Until such support is available, we also sketch available workarounds.

97 MATHEMATICS AND COMPUTING↗

Summary of the Geocarto International Special Issue on "NASA Earth Science Satellite Data for Applications to Public Health" to be Published in Early 2014

At the 2011 Applied Science Public Health review held in Santa Fe, NM, it was announced that Dr. Dale Quattrochi from the NASA Marshall Space Flight Center, John Haynes, Program Manager for the Applied Sciences Public Health program at NASA Headquarters, and Sue Estes, Deputy Program Manager for the NASA Applied Sciences Public Health Program located at the Universities Space Research Association (USRA) at the National Space Science and Technology Center (NSSTC) in Huntsville, AL, would edit a special issue of the journal Geocarto International on "NASA Earth Science Satellite Data for Applications to Public Health". This issue would be focused on compiling research papers that use NASA Earth Science satellite data for applications to public health. NASA's Public Health Program concentrates on advancing the realization of societal and economic benefits from NASA Earth Science in the areas of infectious disease, emergency preparedness and response, and environmental health (e.g., air quality). This application area as a focus of the NASA Applied Sciences program, has engaged public health institutions and officials with research scientists in exploring new applications of Earth Science satellite data as an integral part of public health decision- and policy-making at the local, state and federal levels. Of interest to this special issue are papers submitted on are topics such as epidemiologic surveillance in the areas of infectious disease, environmental health, and emergency response and preparedness, national and international activities to improve skills, share data and applications, and broaden the range of users who apply Earth Science satellite data in public health decisions, or related focus areas.. This special issue has now been completed and will be published n early 2014. This talk will present an overview of the papers that will be published in this special Geocarto International issue.

Quattrochi, Dale A.↗

Preface to the Special Collection: Recollections in Space Physics

Space Physics is a comparatively young scientific discipline, tightly linked to the era of satellite based investigations and the discoveries that came with it. As such, we as a community are fortunate to have met, been taught and mentored by, and even become friends with, many of those who were around to witness the birth of, and in many cases establish, our field. Each of these "Pioneers" have remarkable stories to tell. These accounts from the dawn of the space age provide a glimpse into that era of scientific discovery and are an important part of our collective history that deserve to be shared and commemorated. These are stories of perseverance, ingenuity, luck, and sometimes failure. We are fortunate to live in an era in which these distinguished scientists are still with us and able to share their experiences.To commemorate the 100th Anniversary of the American Geophysical Union (AGU), we have solicited a special collection of recollection papers to memorialize these experiences. This is not the first such effort to capture these stories. In 1994 (Vol. 99, No. A10, pp. 19,099-19,212) and again in 1996 (Vol. 101, No. A5, pp. 10,477-10,585) JGRSpace Physics published special sections entitled, "Pioneers of Space Physics," in celebration of AGU's 75th anniversary. Later, in 1997, Gilmore and Spreiter (1997) added a set of recollection papers on the discovery of the magnetosphere. Together, these papers containing personal accounts from the pioneers of the space age covered the period of roughly 1958-1967.It is our great honor to present retrospective papers from several of our distinguished colleagues who contributed significantly to the explosion in understanding of space physics and aeronomy that occurred from roughly 1967-1980. We chose to start at the end of the previous set of recollections and cover the decade of the 1970s, during which our field greatly expanded. It is also a time in which the second generation of space scientists entered the field and made foundational discoveries that continue to define our discipline.As with the previous papers, we asked the authors to "recount some of the events leading to the emergence of space physics and to put the events into a professional as well as personal perspective." (Gombosi et al.,1994). The authors of this special collection of recollections were selected following the same guidelines as the previous efforts. We started from a long list of senior colleagues and narrowed the list to roughly two dozen distinguished scientists based on discipline and geographic balance. Some of our colleagues, when asked, felt they would be unable to devote the time or energy to such a recollection and declined. Sadly,in the intervening 25 years since the original effort, some of our colleagues who were most active during the early years of the space age have passed. Therefore, this new special collection, 25 years after the first one, is timely with the AGU centennial celebrations, but late in fully capturing the stories of the pioneers of space physics. This is unfortunate and we encourage future editors of this journal to commission specialsections of legacy perspectives with a faster cadence than a quarter of a century.

Kepko, Emil L.↗

Plant terpene specialized metabolism: complex networks or simple linear pathways?

From the perspectives of pathway evolution, discovery and engineering of plant specialized metabolism, the nature of the biosynthetic routes represents a critical aspect. Classical models depict biosynthesis typically from an end-point angle and as linear, for example, connecting central and specialized metabolism. As the number of functionally elucidated routes increased, the enzymatic foundation of complex plant chemistries became increasingly well understood. The perception of linear pathway models has been severely challenged. With a focus on plant terpenoid specialized metabolism, we review here illustrative examples supporting that plants have evolved complex networks driving chemical diversification. The completion of several diterpene, sesquiterpene and monoterpene routes shows complex formation of scaffolds and their subsequent functionalization. These networks show that branch points, including multiple sub-routes, mean that metabolic grids are the rule rather than the exception. This concept presents significant implications for biotechnological production.

60 APPLIED LIFE SCIENCES↗

An editorial to the Special Issue on “Severe climate Risks”

The history of this Special Issue (https://www.sciencedirect.com/special-issue/10JD7LNJNQ0) indirectly dates back to the early 1990s, when the signature of the United Nations Framework Convention on Climate Change kicked-off an international political process based on one overarching and foundational principle: to avoid “dangerous anthropogenic interference with the climate system” at the global level. More than three decades later, such a principle remains central, though complementary aims made their way through the climate negotiation process, such as the importance of ensuring equity and justice, to give just one example here. Scientific knowledge also considerably progressed and we know more about the range of risks that climate change imposes and will continue to impose to the biosphere and humankind, worldwide and at all territorial levels. It is also clear that societal responses to these risks —“climate adaptation” as we know it— are increasingly happening, but definitely not at the pace of climate risk trends (Berrang-Ford et al., 2021, Erisken et al., 2021, Olazabal and Ruiz De Gopegui, 2021, Magnan et al., 2023a, Reckien et al., 2023, UNEP, 2023). As a result, concerns have emerged over the recent years in both the scientific and policy arenas around the idea that societies may not be able to address all climate risks, and that limits to adaptation and induced residual risks need to be considered more seriously. Such concerns further highlight the continuing importance of the imperative to minimise dangerous anthropogenic interference with the climate system, at any scale. But what does “dangerous interference” mean? How can we decide that we are entering the “dangerous” space, compared to a broader range of climate risks that would qualify as problematic but not necessarily “dangerous”? Who should make such a decision? Which conditions drive risk severity over time, including in the future? And what would be the environmental, economic, social and cultural implications of prioritising some climate risks over others? The Intergovernmental Panel on Climate Change (IPCC) was a pioneer in addressing such questions through the development of the “Key Risks” framing that describes those climate risks having the potential to become dangerous or “severe” over the course of this century (Schellnhuber et al., 2006, Schneider et al., 2007, Oppenheimer et al., 2014, O’Neill et al., 2022). The Fifth and Sixth assessment cycles (AR5 and AR6) went a step further by identifying about 120 Key Risks across regions and sectors, and clustering them into 8 “Representative Key Risks” covering a range of geographical systems (low-lying coasts, and to terrestrial and ocean ecosystems), sectors (critical infrastructure, living standards, human health, food security, and water security) and human dimensions (peace and mobility) (Oppenheimer et al., 2014, O’Neill et al., 2022). This Special Issue was born of the efforts of a range of authors, during the development of the IPCC AR6 main Assessment Report between 2019 and 2022, to characterise Key Risks and Representative Key Risks, and advance knowledge on what shapes “severe climate risks” conceptually as well as in the real-world. The series of papers forming this Special Issue is not intended to cover the topic exhaustively, but rather to give readers an overview through the following narrative: defining “severe climate risks” is highly challenging (Magnan et al., 2023b), but knowledge is expanding on the driving climate hazards (Tebaldi et al., 2023) and their implications on geographical systems, sectors and human dimensions, using here food security (Mirzabaev et al., 2023), human mobility (Gilmore et al., 2024) and peace (Buhaug et al., 2023) as illustrative examples. The overall intention is to support especially decision-makers, whatever the scale or sector considered, in asking severity-driven questions to identify sector- and context-specific “priority” risks from climate change.

54 ENVIRONMENTAL SCIENCES↗

Symbiotic niche mapping reveals functional specialization by two ectomycorrhizal fungi that expands the host plant niche

Mutualisms are ubiquitous in natural systems, but less is known about how these positive interactions influence species distributions compared with antagonistic interactions, such as competition and predation. The niche concept is one useful approach for thinking about factors that shape species ranges, which we apply here towards understanding how the nature of plant-mycorrhizal symbioses change across large environmental gradients. We used a continuous niche mapping approach to examine how two ectomycorrhizal fungi (Thelephora terrestris, Suillus pungens) impact pine seedling growth across a two-dimensional soil nitrogen (N) and phosphorus (P) gradient. We found that ectomycorrhizal fungi improved plant growth most in nutrient addition treatments with highly imbalanced N:P ratios, demonstrating that mycorrhizal benefits depend on interactions between niche axes. Nevertheless, T. terrestris (highN:lowP) and S. pungens (lowN:highP) benefited plants most at opposite ends of the resource ratio spectrum, consistent with niche partitioning and functional specialization. While ectomycorrhizal fungi are often thought of as being most beneficial for nitrogen uptake, our results suggest that members of the Thelephoraceae may specialize in improving plant P uptake. Ectomycorrhizal colonization by a single fungus increased plant niche volume (calculated as convex hull volumes of plant growth response surfaces across N and P gradients) compared to non-mycorrhizal control plants and shows the overall positive effects of mutualisms on plant niche volume. Despite plant host benefits in S. pungens and T. terrestris single species treatments, the presence of both fungi together decreased plant niche volume. The lack of functional complementarity, despite functional specialization, indicates that in some environments, either fungal competition or the cost of maintaining a suboptimal mycorrhizal partner can limit the benefits of a higher quality partner. The niche mapping approach we present has the potential to answer fundamental questions about the dimensions of functional diversity in ectomycorrhizal fungi and the distributions of mycorrhizal symbioses.

59 BASIC BIOLOGICAL SCIENCES↗

Introducing the Journal of Chemical Education’s Special Issue on Chemical Security

Chemical security can be described as the practice of protecting chemicals from people. This editorial introduces the Special Issue on Chemical Security. In this article, we present a concise history of the use of chemicals as weapons and briefly describe consolidated global approaches needed to decrease the security risks from chemicals. We briefly introduce the contributions to this Special Issue from scientists and educators around the world on the topic of chemical security. Given recent high-profile global events that involved chemicals as weapons, improving chemical security awareness and competency is a critical need. We hope this Special Issue continues to generate conversation and collaboration on this important topic and enables educators to teach chemical security principles in their classrooms and laboratories.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Special Section Guest Editorial: Active Spectroscopy

A special edition of the journal Optical Engineering invited several scientists to participate in the editorial board of this special issue. The eleven papers in this special section cover recent developments in active spectroscopy, including new phenomenology and applications, advances in systems and components, and new methods for data processing and exploitation.

42 ENGINEERING↗

Special Issue of IJGGC: Nexus of Water and Carbon Capture and Storage

The mission of the Regional Carbon Sequestration Partnership (RCSP) Water Working Group (WWG) is to address stakeholder concerns regarding emerging carbon capture and storage (CCS) technology and potential interactions with local and regional water resources. As part of that mission, the WWG has been working with the International Journal of Greenhouse Gas Control (IJGGC) to develop a Special Issue dedicated to the nexus of water and CCS. Research papers were solicited, edited, and subsequently published in IJGGC. These articles were then submitted to IJGGC on December, 29, 2016, to be published online in a virtual special issue. The articles published in the virtual special issue build upon the research that has been published in IJGGC over the previous 4 years to complete a more comprehensive understanding of water issues associated with CCS.

54 ENVIRONMENTAL SCIENCES↗

Evaluation of NESS soundings used in the FGGE special effort

A special effort to produce high quality edited and enhanced global data sets is being conducted for the two special observing periods of the first GARP global experiment. More than 60 cases were selected for enhancement on the basis of meteorological interest. These cases include situations of blocking, cut off low development, cyclogenesis, and tropical circulations. The sounding data enhancement process consists of supplementing the operational satellite sounding data set with higher resolution sounding in meteorologically active regions and with new soundings where data voids or soundings of questionable quality exist. After the enhancement process is completed, a final editing and quality assessment of the enhanced data are performed. The data is archived for further analyses. Subjective evaluation of the effects of sounding data enhancement indicate that: (1) enhanced and operational IR retrievals are similar in most situations; (2) large improvements in 1000 to 300 mb thickness and mandatory level temperature and intensification of atmospheric thermal gradients occasionally occur; (3) interactive processing can fill in major gaps in the TIROS-N coverage; and (4) assimilation of special effort soundings can result in major modifications to large scale analyses and prognoses.

Atlas, R.↗

Applications of the TIROS-N sounding and cloud motion wind enhancement for the FGGE 'special effort'

In January of 1978, a panel of experts recommended that a 'special effort' be made to enhance and edit satellite soundings and cloud tracked winds in data sparse regions. It was felt that these activities would be necessary to obtain maximum benefits from an evaluation of satellite data during the Global Weather Experiment (FGGE). The 'special effort' is being conducted for the two special observing periods of FGGE. More than sixty cases have been selected for enhancement on the basis of meteorological interest. These cases include situations of blocking, cutoff low development, cyclogenesis, and tropical circulations. The sounding data enhancement process consists of supplementing the operational satellite sounding data set with higher resolution soundings in meteorologically active regions, and with new soundings where data voids or soundings of questionable quality exist.

Atlas, R.↗

Generic buckling curves for specially orthotropic rectangular plates

Using a double affine transformation, the classical buckling equation for specially orthotropic plates and the corresponding virtual work theorem are presented in a particularly simple fashion. These dual representations are characterized by a single material constant, called the generalized rigidity ratio, whose range is predicted to be the closed interval from 0 to 1 (if this prediction is correct then the numerical results using a ratio greater than 1 in the specially orthotropic plate literature are incorrect); when natural boundary conditions are considered a generalized Poisson's ratio is introduced. Thus the buckling results are valid for any specially orthotropic material; hence the curves presented in the text are generic rather than specific. The solution trends are twofold; the buckling coefficients decrease with decreasing generalized rigidity ratio and, when applicable, they decrease with increasing generalized Poisson's ratio. Since the isotropic plate is one limiting case of the above analysis, it is also true that isotropic buckling coefficients decrease with increasing Poission's ratio.

Brunnelle, E. J.↗

The special effort processing of FGGE data

The basic FGGE level IIb data set was enhanced. It focused on removing deficiencies in the objective methods of quality assurance, removing efficiencies in certain types of operationally produced satellite soundings, and removing deficiencies in certain types of operationally produced cloud tracked winds. The Special Effort was a joint NASA-NOAA-University of Wisconsin effort. The University of Wisconsin installed an interactive McIDAS capability on the Amdahl computer at the Goddard Laboratory of Atmospheric Sciences (GLAS) with one interactive video terminal at Goddard and the other at the World Weather Building. With this interactive capability a joint processing effort was undertaken to reprocess certain FGGE data sets. NOAA produced a specially edited data set for the special observing periods (SOPs) of FGGE. NASA produced an enhanced satellite sounding data set for the SOPs while the University of Wisconsin produced an enhanced cloud tracked wind set from the Japanese geostationary satellite images.

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