Characterization and survivability analysis of inverter faults through an analysis of O&M records
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Gunda, Thushara↗
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Statistical Techniques for Reliability and Survival Analysis
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Lifke, Donald↗
Operational and Technical Updates to the Object Reentry Survival Analysis Tool
No abstract available
Bacon, John B.↗
Long-term survival and second malignant tumor prediction in pediatric, adolescent, and young adult cancer survivors using Random Survival Forests: a SEER analysis
Abstract Survival and second malignancy prediction models can aid clinical decision making. Most commonly, survival analysis studies are performed using traditional proportional hazards models, which require strong assumptions and can lead to biased estimates if violated. Therefore, this study aims to implement an alternative, machine learning (ML) model for survival analysis: Random Survival Forest (RSF). In this study, RSFs were built using the U.S. Surveillance Epidemiology and End Results to (1) predict 30-year survival in pediatric, adolescent, and young adult cancer survivors; and (2) predict risk and site of a second tumor within 30 years of the first tumor diagnosis in these age groups. The final RSF model for pediatric, adolescent, and young adult survival has an average Concordance index (C-index) of 92.9%, 94.2%, and 94.4% and average time-dependent area under the receiver operating characteristic curve (AUC) at 30-years since first diagnosis of 90.8%, 93.6%, 96.1% respectively. The final RSF model for pediatric, adolescent, and young adult second malignancy has an average C-index of 86.8%, 85.2%, and 88.6% and average time-dependent AUC at 30-years since first diagnosis of 76.5%, 88.1%, and 99.0% respectively. This study suggests the robustness and potential clinical value of ML models to alleviate physician burden by quickly identifying highest risk individuals.
60 APPLIED LIFE SCIENCES↗
Proteogenomic characterization of difficult-to-treat breast cancer with tumor cells enriched through laser microdissection
Abstract Background Breast cancer (BC) is the most commonly diagnosed cancer and the leading cause of cancer death among women globally. Despite advances, there is considerable variation in clinical outcomes for patients with non-luminal A tumors, classified as difficult-to-treat breast cancers (DTBC). This study aims to delineate the proteogenomic landscape of DTBC tumors compared to luminal A (LumA) tumors. Methods We retrospectively collected a total of 117 untreated primary breast tumor specimens, focusing on DTBC subtypes. Breast tumors were processed by laser microdissection (LMD) to enrich tumor cells. DNA, RNA, and protein were simultaneously extracted from each tumor preparation, followed by whole genome sequencing, paired-end RNA sequencing, global proteomics and phosphoproteomics. Differential feature analysis, pathway analysis and survival analysis were performed to better understand DTBC and investigate biomarkers. Results We observed distinct variations in gene mutations, structural variations, and chromosomal alterations between DTBC and LumA breast tumors. DTBC tumors predominantly had more mutations inTP53,PLXNB3, Zinc finger genes, and fewer mutations inSDC2,CDH1,PIK3CA,SVIL, andPTEN. Notably, Cytoband 1q21, which contains numerous cell proliferation-related genes, was significantly amplified in the DTBC tumors. LMD successfully minimized stromal components and increased RNA–protein concordance, as evidenced by stromal score comparisons and proteomic analysis. Distinct DTBC and LumA-enriched clusters were observed by proteomic and phosphoproteomic clustering analysis, some with survival differences. Phosphoproteomics identified two distinct phosphoproteomic profiles for high relapse-risk and low relapse-risk basal-like tumors, involving several genes known to be associated with breast cancer oncogenesis and progression, includingKIAA1522,DCK,FOXO3,MYO9B,ARID1A,EPRS,ZC3HAV1, andRBM14. Lastly, an integrated pathway analysis of multi-omics data highlighted a robust enrichment of proliferation pathways in DTBC tumors. Conclusions This study provides an integrated proteogenomic characterization of DTBC vs LumA with tumor cells enriched through laser microdissection. We identified many common features of DTBC tumors and the phosphopeptides that could serve as potential biomarkers for high/low relapse-risk basal-like BC and possibly guide treatment selections.
Oncology↗
Prognostic analysis of high-flow nasal cannula therapy and non-invasive ventilation in mild to moderate hypoxemia patients and construction of a machine learning model for 48-h intubation prediction—a retrospective analysis of the MIMIC database
Background This study aims to investigate the clinical outcome between high-flow nasal cannula (HFNC) and non-invasive ventilation (NIV) therapy in mild to moderate hypoxemic patients on the first ICU day and to develop a predictive model of 48-h intubation. Methods The study included adult patients from the MIMIC III and IV databases who first initiated HFNC or NIV therapy due to mild to moderate hypoxemia (100 < PaO2/FiO2 ≤ 300). The 48-h and 30-day intubation rates were compared using cross-sectional and survival analysis. Nine machine learning and six ensemble algorithms were deployed to construct the 48-h intubation predictive models, of which the optimal model was determined by its prediction accuracy. The top 10 risk and protective factors were identified using the Shapley interpretation algorithm. Result A total of 123,042 patients were screened, of which, 673 were from the MIMIC IV database for ventilation therapy comparison (HFNC n = 363, NIV n = 310) and 48-h intubation predictive model construction (training dataset n = 471, internal validation set n = 202) and 408 were from the MIMIC III database for external validation. The NIV group had a lower intubation rate (23.1% vs. 16.1%, p = 0.001), ICU 28-day mortality (18.5% vs. 11.6%, p = 0.014), and in-hospital mortality (19.6% vs. 11.9%, p = 0.007) compared to the HFNC group. Survival analysis showed that the total and 48-h intubation rates were not significantly different. The ensemble AdaBoost decision tree model (internal and external validation set AUROC 0.878, 0.726) had the best predictive accuracy performance. The model Shapley algorithm showed Sequential Organ Failure Assessment (SOFA), acute physiology scores (APSIII), the minimum and maximum lactate value as risk factors for early failure and age, the maximum PaCO 2 and PH value, Glasgow Coma Scale (GCS), the minimum PaO 2 /FiO 2 ratio, and PaO 2 value as protective factors. Conclusion NIV was associated with lower intubation rate and ICU 28-day and in-hospital mortality. Further survival analysis reinforced that the effect of NIV on the intubation rate might partly be attributed to the other impact factors. The ensemble AdaBoost decision tree model may assist clinicians in making clinical decisions, and early organ function support to improve patients’ SOFA, APSIII, GCS, PaCO 2 , PaO 2 , PH, PaO 2 /FiO 2 ratio, and lactate values can reduce the early failure rate and improve patient prognosis.
Fu, Wei↗
Statistical methods for astronomical data with upper limits. II - Correlation and regression
Statistical methods for calculating correlations and regressions in bivariate censored data where the dependent variable can have upper or lower limits are presented. Cox's regression and the generalization of Kendall's rank correlation coefficient provide significant levels of correlations, and the EM algorithm, under the assumption of normally distributed errors, and its nonparametric analog using the Kaplan-Meier estimator, give estimates for the slope of a regression line. Monte Carlo simulations demonstrate that survival analysis is reliable in determining correlations between luminosities at different bands. Survival analysis is applied to CO emission in infrared galaxies, X-ray emission in radio galaxies, H-alpha emission in cooling cluster cores, and radio emission in Seyfert galaxies.
Isobe, T.↗
Use of Minute-by-Minute Cardiovascular Measurements During Tilt Tests to Strengthen Inference on the Effect of Long-Duration Space Flight on Orthostatic Hypotension
Typical methodology for evaluating the effects of spaceflight on orthostatic hypotension (OH) has been survival analysis of tolerance times from 80 head-up tilt tests. However when scheduled test durations are short, there may not be enough failures to allow survival analysis to adequately estimate and compare the effects of flight phase (e.g. pre-flight, number of days post-flight), flight duration, and their interaction, as well as interactions with effects of interventions or countermeasures. The problem is exacerbated in the presence of a repeated measures design, in which subjects participate in tilt tests during various flight phases. Here we show how it is possible to dramatically improve the efficiency of statistical inference in this setting by making use of the additional information contained in minute-by-minute observations of cardiovascular parameters thought to be reflective of progression towards presyncope during tilt testing. Methods: We retrospectively examined operational tilt test (OTT; 10 -min 80 head-up tilt) data from 20 International Space Station (ISS) and 66 Shuttle astronauts 10 d before launch (L-10), on landing day (R+0) and during recovery (R+1, R+3, R+6-10) depending on the level of participation. Data from 5 ISS astronauts tested on R+0 or R+1 who used non-standard countermeasures were excluded. In addition to OTT survival time, 8 cardiovascular parameters (CP: heart rate, systolic, diastolic, and mean arterial blood pressure, pulse pressure, stroke volume, cardiac output, and total peripheral resistance) that might be predictive of progression towards presyncope were measured every minute of each OTT. Statistical analysis was predicated on a two ]stage model of causation. In the first stage, flight duration and time from landing affect the astronauts' degree of OH, which is manifested in the time trends and variation of the above CPs during OTTs. In the second stage, the behavior of these parameters directly affects OTT survival time. Actual analysis proceeded in the opposite direction. First we identified those CPs or linear combinations that best predicted OTT survival regardless of what spaceflight conditions led to OTT completion or presyncope. From these, we calculated a summary statistic (one per OTT) that best predicted survival. We then used mixed ]model regression analysis to relate changes in the summary statistic to flight phase and duration. Inference on the effects of phase, duration, and their interaction on OH follows directly from this second analysis. Results: A linear combination (W) of diastolic blood pressure (DBP) and stroke volume (SV) was found to be the best predictor of OTT survival using the complete data set of minute-by-minute observations of CPs for each OTT. Furthermore, the log-transformed standard deviation of W (Z = log SW) was found to be a strong predictor of survival in the reduced data set consisting of one observation per OTT. In other words, this measure of variability of W during an OTT was the best indicator of whether or not the subject could complete the 10-min test, with higher variability (i.e. higher values of Z) being associated with greater probability of failure. In the mixed-model regression analysis where Z was now treated as a outcome with flight phase and duration groups (ISS and STS) as predictors, we found that there was a significantly more variability in W (higher values of Z) for both groups at R+0, but with no evidence of an interaction until R+3, when the ISS group still had inflated variability, but not the STS group. Conclusions: Variability of the cardiovascular index W recovers more slowly after long-compared to short-duration spaceflight. Since high variability of W has also been shown to be predictive of OTT failure, a primary manifestation of OH, a logical conclusion is that recovery from OH also is slower after long-duration compared to short-duration spaceflights.
Feiveson, Alan H.↗
Cracking characteristics of a habitable module pressure wall following orbital debris penetration
All long-duration spacecraft in low-earth-orbit are subject to high speed impacts by meteoroids and pieces of orbital debris. The threat of damage from such impacts is a significant design consideration in the development of long duration earth-orbiting spacecraft. This report presents the results of a study whose objective was to develop an empirical model to predict the magnitude of the various cracking and through-hole creation phenomena accompanying a habitable module penetration. The significance of the work performed is that the model predictions can be fed directly into a survivability analysis to determine whether or not module unzipping would occur under a specific set of impact conditions. The likelihood of module unzipping over a structure's lifetime can also be determined in such an analysis. In addition, effective hole size predictions can be used as part of a survivability analysis to determine the time available for module evacuation prior to the onset of incapacitation due to air loss. Some of the phenomena considered include maximum petal length, maximum tip-to-tip crack distance, depth of petal deformation, number of cracks formed, orientation of the maximum tip-to-tip distance with respect to the inner wall grain direction, and the effective inner wall hole diameter.
Schonberg, William P.↗
Orbital debris risk analysis and survivability enhancement for Freedom Station manned modules
This paper briefly reviews how 'probability of penetration' analyses are currently performed at NASA, and discusses extension of this procedure to a 'probability of loss' analysis through identifying penetration hazards and failure modes. It goes on to discuss alternatives for increasing crew safety through redesign and/or augmentation of interior manned module systems, and describes an elementary analysis maximizing crew safety considering one identified penetration-induced failure mode (depressurization) and one interior design factor (number of hatches open).
Williamsen, Joel E.↗
Statistical methods for astronomical data with upper limits. I - Univariate distributions
The statistical treatment of univariate censored data is discussed. A heuristic derivation of the Kaplan-Meier maximum-likelihood estimator from first principles is presented which results in an expression amenable to analytic error analysis. Methods for comparing two or more censored samples are given along with simple computational examples, stressing the fact that most astronomical problems involve upper limits while the standard mathematical methods require lower limits. The application of univariate survival analysis to six data sets in the recent astrophysical literature is described, and various aspects of the use of survival analysis in astronomy, such as the limitations of various two-sample tests and the role of parametric modelling, are discussed.
Feigelson, E. D.↗
The effect of differences in time to detection of circulating microbubbles on the risk of decompression sickness
Circulating microbubbles (CMB) are frequently detected prior to the appearance of symptoms of Decompression Sickness (DCS). It is difficult to analyze the effect of CMB on symptoms due to differences in the time to detection of CMB. This paper uses survival analysis models to evaluate the risk of symptoms in the presence of CMB. Methods: Information on 81 exposures to an altitude of 6,400 m (6.5 psi) for a period of three hours, with simulated extravehicular activities, was examined. The presence or absence of CMB was included as a time dependent covariate of the Cox proportional hazards regression model. Using this technique, the subgroup of exposures with CMB was analyzed further. Mean (S.D.) time in minutes to onset of CMB and symptoms were 125 (63) and 165 (33) respectively, following the three hours exposure. The risk of symptoms (17/81) increased 14 times in the presence of CMB, after controlling for variations in time to detection of CMB. Further, the risk was lower when time to detection of CMB was greater than 60 minutes (risk ratio = 0.96; 95 percent confidence intervals = 0.94 - 0.99 0.99 P less than 0.01) compared to CMB before 60 minutes at altitude. Conclusions: Survival analysis showed that individual risk of DCS changes significantly due to variations in time to detection of CMB. This information is important in evaluating the risk of DCS in the presence of CMB.
Kumar, K. V.↗
Developing a Pyrolysis Gas Thermal Blocking Model for Reentry Demise
In NASA’s Object Reentry Survival Analysis Tool (ORSAT), aerodynamic drag and aerothermal heating coefficients are computed for each of the free-molecular, continuum, and transitional flow regimes using analytical and semi-analytical methods. These heating coefficients were derived for typical metallic materials that melt and do not have a strong gas-phase contribution to the flow in the boundary layer. Modern satellites typically feature fiber-reinforced polymer (FRP) components, such as solar array booms, facesheets of sandwich panels, or overwraps for composite-overwrapped pressure vessels (COPV). These FRP materials do not behave the same as metals in the reentry environment, but instead will pyrolyze and develop significant volumes of gas into the boundary layer. Accurately predicting the reentry demise of FRP components is critical to assessing the reentry casualty risk for modern spacecraft. Research in recent years has shown that this demisability can depend heavily on how the expulsion of gaseous pyrolysis products through the outer surface of the material affects the heat flux at the surface. The ODPO has been developing a reduced-order model of the effect of pyrolysis gas blowing on the heat flux based on correlations between a blowing factor and a non-dimensional heat flux to be incorporated in the upcoming version 7.3 of the Object Reentry Survivability Analysis Tool (ORSAT). This presentation discusses the progress of this development project and the challenges remaining for generalizing the model across families of FRP materials.
Benton Greene↗
The co-determination of home and workplace relocation durations using survival copula analysis
Not Available
Bostanara, Maryam↗
An analysis of radio pulsar nulling statistics
Survival analysis methods are used to seek correlations between the fraction of null pulsars and other pulsar characteristics for an ensemble of 72 radio pulsars. The strongest correlation is found between the null fraction and the pulse period, suggesting that nulling is a manifestation of a faltering emission mechanism. Correlations are also found between the fraction of null pulses and other parameters that have a strong dependence on the pulse period. The results presented here suggest that nulling is broad-band and may ultimately be explained in terms of polar cap models of pulsar emission.
Biggs, James D.↗
Validating Drag and Heating Coefficients for Hollow Reentry Objects in Continuum Flow Using a Mach 7 Ludwieg Tube
Drag and heating coefficient databases and models are crucial to destructive reentry simulation. The NASA Orbital Debris Program Office (ODPO) develops, maintains, and performs analysis with the Object Reentry Survival Analysis Tool (ORSAT), which comprises drag and heating models for free molecular, transitional, and continuum flow regimes. These models have, in the past, only included solid, convex, blunt shapes (such as boxes, spheres, and cylinders). Previous work led by ODPO includes the extension of these models to hollow cylinders and square boxes in free molecular and transitional flow using the Direct Simulation Monte Carlo (DSMC) method. Since 2019, the ODPO has continued its program of DSMC simulations and extended the project to include analyses with the NASA Data Parallel Line Relaxation (DPLR) program on hollow cylinders and boxes (with varying wall thickness-diameter ratio). In fall 2022, the ODPO began a collaboration with the University of Texas San Antonio (UTSA) to use the Mach 7 Ludwieg Tube facility to validate the model built using numerical simulations. This facility can replicate (at a scale of approximately 100:1) the conditions seen by reentering objects near typical demise altitudes. We present here the drag and heating coefficients derived from the continued DSMC simulations, the new DPLR simulations, and the 26-test series at UTSA.
Chris Ostrom↗