Effect of gravity wave induced small-scale perturbations in the atmosphere on infrasound arrival times at a high-altitude floating sensor system
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Silber, Elizabeth Allaryce↗
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Near-regional to local event location using infrasound arrival times from single sensors
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Koch, Clinton↗
Dynamic three-dimensional maps of solute concentration and solute arrival times in synthetic and geologic porous media
Experimental and training data associated with the publication entitled ‘Three-Dimensional Permeability Inversion Using Convolutional Neural Networks and Positron Emission Tomography’ (published in WRR, DOI: 10.1029/2021WR031554). The dataset contain three-dimensional maps of various properties on four geologic rock cores obtained from X-ray Computed Tomography and Positron Emission Tomography imaging measurements. The synthetic training dataset used in the publication is also attached.
58 GEOSCIENCES↗
PeakQC: A Software Tool for Omics-Agnostic Automated Quality Control of Mass Spectrometry Data
Mass spectrometry is broadly employed to study complex molecular mechanisms in various biological and environmental fields, enabling 'omics' research such as proteomics, metabolomics, and lipidomics. As study cohorts grow larger and more complex with dozens to hundreds of samples, the need for robust quality control (QC) measures through automated software tools becomes paramount to ensure the integrity, high quality, and validity of scientific conclusions from downstream analyses and minimize the waste of resources. Since existing QC tools are mostly dedicated to proteomics, automated solutions supporting metabolomics are needed. To address this need, we developed the software PeakQC, a tool for automated QC of MS data that is independent of omics molecular types (i.e., omics-agnostic). It allows automated extraction and inspection of peak metrics of precursor ions (e.g., errors in mass, retention time, arrival time) and supports various instrumentations and acquisition types, from infusion experiments or using liquid chromatography and/or ion mobility spectrometry front-end separations and with/without fragmentation spectra from data-dependent or independent acquisition analyses. Diagnostic plots for fragmentation spectra are also generated. Here, in this paper, we describe and illustrate PeakQC’s functionalities using different representative data sets, demonstrating its utility as a valuable tool for enhancing the quality and reliability of omics mass spectrometry analyses.
47 OTHER INSTRUMENTATION↗
Generating Uncertainty Distributions for Seismic Signal Onset Times
Signal arrival-time estimation plays a critical role in a variety of downstream seismic analyses, including location estimation and source characterization. Any arrival-time errors propagate through subsequent data-processing results. In this article, we detail a general framework for refining estimated seismic signal arrival times along with full estimation of their associated uncertainty. Using the standard short-term average/long-term average threshold algorithm to identify a search window, we demonstrate how to refine the pick estimate through two different approaches. In both cases, new waveform realizations are generated through bootstrap algorithms to produce full a posteriori estimates of uncertainty of onset arrival time of the seismic signal. The onset arrival uncertainty estimates provide additional data-derived information from the signal and have the potential to influence seismic analysis along several fronts.
58 GEOSCIENCES↗
Genetic variation associated with adult migration timing in lineages of Steelhead and Chinook Salmon in the Columbia River
Abstract With the discovery of a major effect region (GREB1L, ROCK1) for adult migration timing in genomes of both Chinook Salmon and Steelhead, several subsequent studies have investigated the effect size and distribution of early and late migration alleles among populations in the Columbia River. Here, we synthesize the results of these studies for the major lineages of Chinook Salmon and Steelhead that include highly distinct groups in the interior Columbia River that exhibit atypical life histories from most coastal lineage populations of these two species. Whole‐genome studies with high marker density have provided extensive insight into SNPs most associated with adult migration timing, and suites of markers for each species have been genotyped in large numbers of individuals to further validate phenotypic effects. For Steelhead, the largest phenotypic effect sizes have been observed in the coastal lineage (36% of variation for passage timing at Bonneville Dam; 43% of variation for tributary arrival timing) compared to the inland lineage (7.5% of variation for passage timing at Bonneville Dam; 8.4% of variation for tributary arrival timing) that overwinter in freshwater prior to spawning. For Chinook Salmon, large effect sizes have been observed in all three lineages for multiple adult migration phenotypes (Coastal lineage: percentage of variation of 27.9% for passage timing at Bonneville Dam, 28.7% for arrival timing for spawning; Interior ocean type: percentage of variation of 47.6% for passage timing at Bonneville Dam, 39.6% for tributary arrival timing, 77.9% for arrival timing for spawning; Interior stream type: percentage of variation of 35.3% for passage at Bonneville Dam, 9.8% for tributary arrival timing, 4.7% for arrival timing for spawning). Together, these results have extended our understanding of genetic variation associated with life history diversity in distinct populations of the Columbia River, however, much research remains necessary to determine the causal mechanism for this major effect region on migration timing in these species.
Narum, Shawn R.↗
Jet timing
The measurement of the arrival time of a particle, such as a lepton, a photon, or a pion, reaching the detector provides valuable information. A similar measurement for a hadronic final state, however, is much more challenging as one has to extract the relevant information from a collection of particles. In this paper, we explore various possibilities in defining the time of a jet through the measurable arrival times of the jet constituents. We find that a definition of jet time based on a transverse momentum weighted sum of the times of the constituents has the best performance. For prompt jets, the performance depends on the jet trajectory. For delayed jets, the performance depends on the trajectory of the jet, the trajectory of the mother particle, and the location of the displaced vertex. Compared to the next-best-performing jet time definition, the transverse momentum weighted sum has roughly a factor of ten times better jet time resolution. We give a detailed discussion of the relevant effects and characterize the full geometrical dependence of the performance. These results highlight the critical importance of using a proper definition of jet time with its corresponding detector-dependent calibration and the exciting possibility of deepening our understanding of jets in the time domain.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Dynamic time-warping correction for shifts in ultrahigh resolving power ion mobility spectrometry and structures for lossless ion manipulations
Detection of arrival time shifts between ion mobility spectrometry (IMS) separations can limit achievable resolving power (Rp), particularly when multiple separations are summed or averaged, as commonly practiced. Such variations are more apparent in higher Rp measurements, and are particularly evident in long path length traveling wave structures for lossless ion manipulations (SLIM) IMS due to their typically much longer separation times. Here we explore the utility of a data processing approaches employing linear alignment (LA) and nonlinear dynamic time warping (DTW) of IMS separations to correct for variations between separations, such as due to pressure fluctuations. For multipass SLIM IMS separations, where narrow mobility range measurements have arrival times that can extend to several seconds, the LA approach effectively corrected for such variations, and significantly improvement Rp for summed separations. However, LA was much less effective for high Rp broad mobility range separations, such as obtained with multilevel SLIM IMS. Changes in IMS arrival times ions were observed to be correlated with small pressure changes, with approximately 0.6% relative arrival time shifts being common, sufficient to result in a loss of Rp for summed separations. Comparison of the approaches showed DTW alignment performed similarly to LA when used over a narrow mobility range, but was significantly better (providing narrower peaks and higher signal intensities) for wide mobility range data. We found the DTW approach increased Rp by as much as 115% for measurements in which 50 IMS separations over 2 seconds were summed, and leading to a large improvement in effective Rp. We conclude that DTW is superior to LA for ultrahigh resolution broad mobility range SLIM IMS separations, correcting for ion arrival time shifts regardless of the cause. Our tool is publicly available for use with universal ion mobility format (.UIMF) and text (.txt) files.
Data alignment, dynamic time warping, ion mobility↗
Shock and contact interaction with a simple cubic array of particles
Shock-particle interaction is a fundamental pillar of multiphase compressible flows that has been studied at length for many decades. However, little attention has been paid to the interaction of particles with a contact interface that follows a shock in shock tube experiments and applications relating to blast waves. Presently, the phenomenon is studied at the microscale via particle resolved simulations of shock contact systems interacting with a structured array of particles as well as isolated particles. Simulations are conducted at particle volume fractions of 0%, 5%, 10%, 20%, and 40% at three contact Mach numbers. Additionally, the diaphragm position is varied, which controls the timing of the shock arrival time in relation to the contact arrival time. The modification to the drag on these stationary particles by the contact is analyzed and compared to the compressible Maxey–Riley–Gatignol model, which is adequate for the single particle cases but does not account for fluid mediated particle–particle interactions.
Mechanics↗
A Catalog of Temporally Localized Systematic Deviations in Global Body Wave Travel-Time Measurements
Accurate measurements of the arrival times of seismic waves are crucial for seismological analyses such as robust locations of earthquakes, characterization of seismic sources, and high-fidelity imaging of the Earth’s interior. However, these travel-time measurements can sometimes be contaminated by timing errors at the stations which record this data. In this study, we apply a classical approach, based on identifying time-dependence in measured body wave arrival times, to identify these timing errors in a dataset on the order of 107 individual measurements. We find timing deviations at a subset of the stations in our dataset and document the temporal location, extent, and severity of these errors, finding errors at 83 stations, and impacting ~100,000 measurements. This catalog of deviations may enable future investigators to obtain a more accurate dataset through the implementation of quality control measures to eliminate the contaminated data we have identified.
58 GEOSCIENCES↗
Forward modeling of Doppler velocity interferometer system for improved shockwave measurements
We report that when near-instantaneous shocks are recorded by using a Doppler velocity interferometer velocity interferometer system for any reflector (VISAR), they typically exceed the detector’s ability to react and “skipped fringes” result, where its visibility briefly reduces. Traditionally, replacing skipped fringes required guesswork in analysis, which increased arrival time errors. Second, the use of long but velocity-sensitive interferometer delays with fast detectors which can resolve the delay has traditionally been avoided because of the fear of confusing the arrival time signal. However, shorter delays produce smaller fringe phase shifts per velocity and, thus, can decrease velocity precision. We realize that while some loss of fringe information occurs at shock events, this is often just a partial loss and the residual fringe information can still hold valuable information. We describe a forward model (FM) of the interferometer action and detector blurring that assists with VISAR fringe analysis at skipping events: (1) more precise shock arrival times, (2) arrival time precision not limited by long delays, and (3) improved ghost subtraction, which improves accuracy over a broad time region. Lastly, we demonstrate the utility of a FM on National Ignition Facility and Laboratory for Laser Energetics Omega shots and discuss data process methods to increase the high time resolution of VISAR systems despite their limitations and complexities.
47 OTHER INSTRUMENTATION↗
Self-Supervised T-GCN for Detection of Disturbance and Propagation in Power Grid
Urban power systems increasingly rely on dense sensing to monitor grid reliability, yet disturbance labels are scarce and events are rare. We present a self-supervised spatio-temporal method that detects, localizes, and characterizes grid frequency disturbances across urban areas using only unlabeled data. Our approach trains a tiny Temporal Graph Convolutional Network (T-GCN) to forecast per-site frequency residuals (deviation from 60 Hz). The sensor graph is constructed directly from signals using pre-event Pearson correlation with a cross-correlation lag penalty without geocoding. At inference, node-level anomalies are the model's forecast errors; region-level alarms arise from connected components of high-score nodes. We estimate disturbance propagation by computing per-node arrival times (first persistent exceedance), then fit a planar or time-of-arrival model to obtain direction, speed, and an epicenter proxy. With only three real events collected at decisecond resolution across U.S. cities, we evaluate the T-GCN and report time-to-detect, footprint size, and propagation consistency. We further show that short-window embeddings from the T-GCN's hidden states enable few-shot event-vs-background recognition via a simple prototypical classifier. Despite minimal data and no labels, our system yields fast, spatially coherent detection and interpretable propagation maps, offering a practical, lightweight pathway to city-scale grid resilience analytics.
Niu, Haoran [ORNL] (ORCID:0000000155228297)↗
Inferring the Focal Depths of Small Earthquakes in Southern California Using Physics-Based Waveform Features
Determining the depths of small crustal earthquakes is challenging in many regions of the world, because most seismic networks are too sparse to resolve trade-offs between depth and origin time with conventional arrival-time methods. Precise and accurate depth estimation is important, because it can help seismologists discriminate between earthquakes and explosions, which is relevant to monitoring nuclear test ban treaties and producing earthquake catalogs that are uncontaminated by mining blasts. Here, we examine the depth sensitivity of several physics-based waveform features for ~8000 earthquakes in southern California that have well-resolved depths from arrival-time inversion. We focus on small earthquakes (2 < M L < 4) recorded at local distances (<150 km), for which depth estimation is especially challenging. We find that differential magnitudes (M w /M L –M c ) are positively correlated with focal depth, implying that coda wave excitation decreases with focal depth. We analyze a simple proxy for relative frequency content, Φ≡log 10 (M 0 )+3log 10 (f c ), and find that source spectra are preferentially enriched in high frequencies, or “blue-shifted,” as focal depth increases. Here, we also find that two spectral amplitude ratios Rg 0.5–2 Hz/Sg 0.5–8 Hz and Pg/Sg at 3–8 Hz decrease as focal depth increases. Using multilinear regression with these features as predictor variables, we develop models that can explain 11%–59% of the variance in depths within 10 subregions and 25% of the depth variance across southern California as a whole. We suggest that incorporating these features into a machine learning workflow could help resolve focal depths in regions that are poorly instrumented and lack large databases of well-located events. Some of the waveform features we evaluate in this study have previously been used as source discriminants, and our results imply that their effectiveness in discrimination is partially because explosions generally occur at shallower depths than earthquakes.
58 GEOSCIENCES↗
Investigation of a digitizer for the plastic scintillation detectors of time-of-flight mass measurements
A CAEN DT5742 digitizer has been investigated to process the fast signals from the photomultiplier tubes of the time-of-flight detectors for fast ion beams. A test setup consisting of two plastic scintillation detectors and a pulsed laser source provided signals which were recorded by the digitizer and systematically analyzed with different algorithms to derive the amplitude, rise time and arrival time of the detection signal. To obtain the best amplitude and time resolutions, various optimization techniques including peak fitting and signal smoothing, interpolation improvement, and time-walk correction by amplitude and rise time have been performed and compared in detail. Here we compared the time resolutions obtained by three digital algorithms of leading-edge, zero-crossing constant-fraction (ZC-CFD) and direct constant-fraction discriminations. Finally, we found that the best time-of-flight resolution between two PMTs can be achieved as 12 ps by the method using sample minimum for peak location and using the time-walk-resistant ZC-CFD with 4-point interpolation for timing.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Overview of the front-end electronics of CMS HGCal - including readout and powering
The end-cap calorimeters of CMS will be upgraded to a single High Granularity Calorimeter (HG-Cal) for the HL-LHC, including both silicon sensors and scintillator tiles with on-tile SiPMs as active elements. The readout of the active elements is performed by an ASIC (HGCROC in 130 nm CMOS technology) that measures the amplitude and arrival time of the signals. The amplitude is measured over a large dynamic range to allow calibration with single particles and the measurement of TeV showers. The time of arrival of high-energy showers will be measured with a precision of around 30 ps. A second pair of “concentrator” ASICs - ECON-T and ECON-D - takes the data from the HGCROC channels and packages them for transmission via optical links to the off-detector electronics. The ECON-T transmits trigger data at 40 MHz, to form part of the level-1 trigger. The ECON-D transmits concentrated data packets at up to 1 MHz, upon reception of a level-1 trigger signal. In addition to these ASICs, HGCal will use modified versions of common HL-LHC electronics developments, for the power chain and the optical control and readout. The dense nature of the HGCal provides additional challenges for the electronic boards and cabling. In this proceedings the overall HGCal front electronics scheme, including the latest performance of the HGCROC and ECON ASICs is presented.
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
Utah FORGE - Development of a Reservoir Seismic Velocity Model and Seismic Resolution Study
This is data from and a final report on the development of a 3D velocity model for the larger FORGE area and on the seismic resolution in the stimulated fracture volume at the bottom of well 16A-32. The velocity model was developed using RMS velocities of the seismic reflection survey and seismic velocity logs from borehole measurements as an input model. To improve the accuracy of the model in the shallow subsurface, travel times phase arrivals of the direct propagating P-waves were determined from the seismic reflection data, using PhaseNet, a deep-neural-network-based seismic arrival time picking method. The travel times were subsequently inverted using the input velocity model. The seismic resolution study used borehole and surface seismic sensors as well as the seismicity observed during the April 2022 stimulation experiment to estimate the seismic resolution in the activated fracture reservoir. The data contain a 3D P- and S-wave velocity model for the larger FORGE area.
15 GEOTHERMAL ENERGY↗
Quantum Random Walk Simulator Using Ultrafast Optical Switches
Quantum random walk processes have many intriguing applications in high energy physics including the simulation of parton shower evolution. We will present the design and initial results of a fiber loop time-bin quantum walk architecture using the hardware platform already in operation at the Fermilab Quantum Network in which the state of the photon is defined by its time-of-arrival. The fiber loop consists of an unbalanced Mach-Zehnder interferometer implemented using an ultrafast electro-optical switch. The input switch controls the photon path within the interferometer, while the output switch will direct the photon back into the interferometer or to single photon detectors to measure the probability distribution of arrival times. Depending on which path the photon takes each pass through the loop, its wave function will interfere on these optical switches similar to quantum interference on a beam splitter. This work is an important step towards utilizing real-world advantages of quantum information protocols to solve problems in high energy physics.
Cameron, Andrew [Fermilab]↗
Characterization of Gas-Phase Native(-like) Proteins Using Structures for Lossless Ion Manipulations
High-resolution mobility-based ion separations in Structures for Lossless Ion Manipulations (SLIM) have been useful for ion mobility separations for a variety of molecular classes in the gas phase. Here, in this study, we present multipass SLIM separations for gas-phase proteins in their near-native state exhibiting charge-state-dependent arrival time distributions using carbonic anhydrase (29 kDa), alcohol dehydrogenase (148 kDa), and apo-transferrin (79 kDa). The experimental CCS values were obtained from calibration curves for the arrival times of Agilent Tune Mix ions. For multipass separations, the ATDs were converted to CCS values by deconvoluting the multipass arrival times into accurate single-pass values amenable to the single-pass calibration curves. Mass spectra of carbonic anhydrase (CA) showed three different charge states (z = 9+ to 11+). Their corresponding mobility peaks were baseline-separated by using 8-m single-pass separations. When compared to the corresponding drift tube ion mobility (DTIMS) measurements, the CCS values obtained from DTIMS and SLIM were in agreement within experimental error. Single-pass analysis of alcohol dehydrogenase (ADH) exhibits three predominant charge states (z = 23+ to 25+) with mobility overlap between adjacent charge states. The mobility peak resolution for ADH improved with multipass separations (up to 24-m path length). In addition, CCS distributions obtained for charge states z = 16+ to 18+ of apo-transferrin reveal a transition from a compact unimodal form (z = 18+ and 19+) to broader multimodal CCS distributions for z = 16+. For apo-transferrin, 40-m multipass separations were performed allowing for complete isolation of the selected mobility range corresponding to z = 17+, leading to selective isolation of a narrow arrival time window. The extended mobility separations provided minimal alterations to the structure of the proteins, and the experimentally derived CCS values showed minimal change as a function of the separation time or number of passes. Mobility-based ion separations for native-like proteins, using SLIM, open opportunities for native-IMS applications as well as other manipulations enabled by SLIM-like mobility-selective isolation and collection.
charge state distribution↗