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Dataset for 'Ombadi, M. & Varadharajan, C. (2022). Urbanization and aridity mediate distinct salinity response to floods in rivers and streams across the Contiguous United States, Water Research'

This package contains data sets and code used to obtain the results in Ombadi, M., & Varadharajan, C. (2022). Urbanization and aridity mediate distinct salinity response to floods in rivers and streams across the Contiguous United States. Water Research, 118664. The folder "data" contains 259 .csv files, each of which has daily time series of concurrent streamflow (Q) and specific conductance (SC) for each of the sites used in this study originally downloaded from the USGS National Water Information System (NWIS; USGS, 2016). The number of data points in each of the files is at least 3650 (i.e. 10 years of daily measurements). The folder "RF_single_data" contains 259 .csv files, each of which include data used to train and test the Random Forest models at individual sites for predicting SC during days of floods. The folder "RF_regional_data" contains 3 .csv files, each of which include scaled data compiled from all sites within each climate zone (arid, temperate and wet). "metadata.csv" contains the physical properties of the 259 catchments corresponding to the sites used in this study; this data was extracted from GAGES-II dataset (Falcone et al., 2010). "RF_implementation.ipynb" is a Jupyter notebook with the code needed to implement the analysis using Random Forest models either for individual sites or for the regional models (for each climate zone). The code utilizes the data in the two folders: "RF_single_data" and "RF_regional_data" and the metadata.csv file.

54 ENVIRONMENTAL SCIENCES↗

Stream Chemistry, Synoptic Surveys, East Fork Poplar Creek Watershed, TN, USA; April 2023 to February 2025

Impacts of developed land cover on stream chemistry can be difficult to discern from natural variability, particularly in carbonate watersheds where weathering of urban infrastructure and lithology generate similar signatures. We evaluated how spatial patterns of stream chemistry varied across perennial and non-perennial tributaries spanning an urban-to-forested gradient in a mid-order, carbonate-dominated watershed. This data package contains a processed and compiled summary of stream chemistry and properties obtained from 12 synoptic surveys of 54 stream sites across the East Fork Poplar Creek watershed located near Oak Ridge, TN, United States. The sites include non-perennial tributaries, perennial tributaries, and the main stem and span forested to urban (highly developed) land cover gradients. The data package includes the processed and flagged chemical data (WaDE_SynopticSummary_FinalChemistry), metadata describing data flagging and analysis (WaDE_SynopticSummary_Metadata), information about each site and its contributing subcatchment (WaDE_SynopticSummary_SiteInformation), and a comparison of instrument and field detection limits used to determine method detection limits for the study (WaDE_SynopticSummary_DetectionLimitComparison). Stream chemistry includes stream parameters measured in situ using multiparameter probes (dissolved oxygen, pH, specific conductance, temperature) and solutes including nutrients (nitrate, ammonium, soluble reactive phosphorus), dissolved organic carbon, dissolved inorganic carbon, major cations (calcium, magnesium, potassium, sodium), major anions (chloride, sulfate), and a broad suite of minor and trace elements.

EARTH SCIENCE > TERRESTRIAL HYDROSPHERE > SURFACE ↗

Integrating fine root diameter and watershed mapping to characterize rhizosphere hydrology

Root morphology and soil hydraulic characteristics were integrated using watershed distance mapping to show water distribution and uptake across the plant-soil interface. Poplar (Populus deltoides, P. trichocarpa), maize (Zea mays), juniper (Juniperus virginiana), grape (Vitis rotundifolia) and maple (Acer saccharum) seedlings were grown in sand, after which root diameter and soil water dynamics were assessed via sequential neutron radiography. Three local soil regions (root-soil interface or edge, rhizosphere, bulk soil) were classified based on both radial distance from the root surface and diameter of the nearest root, from which changes in water content and distribution were characterized using digital image processing. Water content dynamics across the rhizosphere showed two different species-independent processes: a consistently elevated water content at the root-soil edge interface which increased with root diameter, and hysteresis as the rhizosphere transitioned to bulk soil (~0.5 cm from the root), independent of root diameter. Water uptake per unit root surface area declined exponentially with root diameter, independent of species. Results highlight the species-independent hydrologic characteristics of the rhizosphere and the potential for evaluating them in a local spatially connected soil context. Avenues for improved integration of soil and root characteristics are discussed.

59 BASIC BIOLOGICAL SCIENCES↗

Elastic deformation as a tool to investigate watershed storage connectivity

Storage-discharge relationships and dynamic changes in storage connectivity remain key unknowns in understanding and predicting watershed behavior. In this study, we use Global Positioning System measurements of load-induced Earth surface displacement as a proxy for total water storage change in four climatologically diverse mountain watersheds in the western United States. Comparing total water storage estimates with stream-connected storage derived from hydrograph analysis, we find that each of the investigated watersheds exhibits a characteristic seasonal pattern of connection and disconnection between total and stream-connected storage. We investigate how the degree and timing of watershed-scale connectivity is related to the timing of precipitation and seasonal changes in dominant hydrologic processes. Our results show that elastic deformation of the Earth due to water loading is a powerful new tool for elucidating dynamic storage connectivity and watershed discharge response across scales in space and time.

Environmental Sciences & Ecology↗

Data-model files associated with the manuscript "Modeling the Effects of Wetland Restoration on Coastal Hydrology: A Case Study of Elkhorn Slough Watershed, California"

This package contains the data, simulation setups, notebooks and figures used in “Modeling the Effects of Wetland Restoration on Coastal Hydrology: A Case Study of Elkhorn Slough Watershed, California” (Xu et al., 2025). In this study, we selected Elkhorn Slough, a tidal estuary, in California, to investigate the impact of wetland restoration and sea level rise on coastal hydrology using the process-based coastal hydrologic model, Advanced Terrestrial Simulator (ATS), informed by site-specific data. We designed a novel modeling workflow for incorporating wetland restoration features into land cover and soil properties for the model parameterization. The validation results demonstrate a strong agreement between modeled and observed data. We studied the characteristics of coastal watershed hydrology, then focused on the surface water dynamics at two wetland sites within Elkhorn Slough, a reference site and a restored site. Our simulation results indicate that the restored site successfully maintains surface elevation, resulting in reduced surface inundation. We also examined the impact of wetland restoration under expected sea level rise over the next few decades. The low-lying Yampah Marsh, the reference site, is likely to be inundated due to future sea level rise when highest tides arrive; while a higher percentage of Hester Marsh, the restored site, would retain marsh vegetation in coming decades, regardless of tidal conditions. Our study provides important information for examining the outcome of restoration practices that include surface elevation in tidal wetlands under climate changes.Several files can be found from this data package.1. README.md: This file describes the title, journal, co-authors, abstract, repository structure and model version.2. Simulation_Setups.zip: The file contains the model configuration files (XML format) for ATS. 3. Notebooks.zip: The file contains the Jupyter notebooks for generating the pre- and post-restoration meshes and the meshes of future scenarios. 4. Figures.zip: The file contains the figures used in the manuscript.5. Data.zip: The file contains the data used to drive the model simulations, including watershed and wetlands boundaries, mesh files and references to additional datasets (e.g., meteorological forcing, tidal dataset, DEMs, land cover, soil properties). Also, it contains water level observations at the restored wetland.

54 ENVIRONMENTAL SCIENCES↗

Modelling the Effects of Wetland Restoration on Coastal Hydrology: A Case Study of Elkhorn Slough Watershed, California

ABSTRACT Coastal wetlands, some of the most productive ecosystems on Earth, provide critical ecosystem services, including support of biodiversity, carbon sequestration and flood protection. In recent decades, these ecosystems have experienced extensive coastal wetland loss. Coastal wetland restoration provides a beacon of hope, offering a chance to reclaim these important habitats. However, even with billions of dollars invested worldwide in restoring coastal wetlands, we still lack comprehensive knowledge about the effectiveness of these restoration efforts in recovering wetland ecosystem functions and how future climate change may affect these efforts. The ability to evaluate how these ecosystems will function in the future is vital for examining current investments and developing future protection and management plans. We selected Elkhorn Slough, a tidal estuary, in California, to investigate the impact of wetland restoration and sea level rise (SLR) on coastal hydrology using the process‐based coastal hydrologic model, Advanced Terrestrial Simulator (ATS), informed by site‐specific data. We designed a novel modelling workflow for incorporating wetland restoration features into land cover and soil properties for the model parameterization. The validation results demonstrate a strong agreement between modelled and observed data. We studied the characteristics of coastal watershed hydrology, then focused on the surface water dynamics at two wetland sites within Elkhorn Slough, a reference site and a restored site. Our simulation results indicate that the restored site successfully maintains surface elevation, resulting in reduced surface inundation. We also examined the impact of wetland restoration under expected SLR over the next few decades. The low‐lying Yampah Marsh, the reference site, is likely to be inundated due to future SLR when highest tides arrive, while a higher percentage of Hester Marsh, the restored site, would retain marsh vegetation in coming decades, regardless of tidal conditions. Our study provides important information for examining the outcome of restoration practices that include surface elevation in tidal wetlands under climate changes.

advanced terrestrial simulator↗

Scripts and data associated with a manuscript linking soil and sediment elemental composition with dissolved organic matter chemistry across CONUS

This data package provides scripts and geochemical data for a manuscript titled “Linkages between mineral element composition of soils and sediments with hyporheic zone dissolved organic matter chemistry across the contiguous United States” (preprint: doi: 10.22541/essoar.169447343.31694990/v1). This data is associated with the Worldwide Hydrobiogeochemistry Observation Network for Dynamic River Systems (WHONDRS, https://whondrs.pnnl.gov) and is an extension of the Summer 2019 Sampling campaign which crowdsourced samples from rivers and sediment across the continental United States. Data from this study can be found at https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1603775 and https://data.ess-dive.lbl.gov/datasets/doi:10.15485/1729719. The main objective of this manuscript was to couple sediment water extractable dissolved organic matter chemistry, defined by ultra-high resolution mass spectrometry, with localized sediment elemental composition and watershed scale soil elemental characteristics. This data package contains one main folder with four subfolders. The main data folder contains (1) readme; (2) data dictionary (dd); (3) file-level metadata (flmd); (4) an R markdown to reproduce manuscript figures and analyses; (5) a pdf of instructions to reproduce NGS interpolations with ArcGIS software; and (6) a python script to reproduce NGS extrapolations with python. The four subfolders contain files required to reproduce NGS extrapolations include (1) ‘CONUS_boundaries’ containing boundary layers (.shp) for the Continental United States; (2) ‘ngs_project’ containing files (.shp) with point level NGS soil elemental data (Grossman et al., 2004); (3) ‘raster_outputs’ containing the interpolated raster output files for various soil elements; and (4) ‘NGS_Chemistry_Final’ contain final extracted soil elemental data.

54 ENVIRONMENTAL SCIENCES↗

Data-model files associated with the manuscript titled "The Importance of Explicitly Representing the Streambed in Watershed Models" (Shuai et al., 2023 HP)

This data package contains the model inputs and outputs used in the manuscript titled "The Importance of Explicitly Representing the Streambed in Watershed Models" (Shuai et al., 2023 HP). The data.zip file contains the data used to drive the Advanced Terrestrial Simulator (ATS) model simulations. The model.zip file contains the XML input file for ATS. The notebook.zip file contains the Jupyter notebooks for pre- and post- processing model results. The figures.zip file contains the raw figures associated with the manuscript. We generated this data package in support of the manuscript and research reproducibility. The background of this study is that the streambed itself has not been explicitly represented in watershed models, although the streambed characteristics are significantly different from those of its surrounding soil. We aim to answer the following questions: 1) How do streambed properties including hydraulic conductivity, thickness and resolution impact the groundwater-surface water exchange fluxes across the streambed? 2) Is an explicit representation of streambed important in watershed modeling?; 3) Is a high-resolution streambed needed for watershed simulations?

54 ENVIRONMENTAL SCIENCES↗

Interacting Effects of Watershed and Coastal Processes on the Evolution of Compound Flooding During Hurricane Irene

Abstract In low‐lying estuarine regions, compound flooding (CF) is caused by the co‐occurrence of extreme precipitation, river flooding and storm surge. In recent decades, there has been a rise in the frequency and intensity of pluvial‐coastal CF events in different parts of the U.S. due to the increased frequency of intense precipitation and storm surge events. However, in estuarine and deltaic regions, the CF characteristics depend mainly on the storm tide and river flow interaction. Understanding how the fluvial‐coastal CF may respond to changes to watershed and estuarine characteristics is essential for future CF hazard prediction. This study examined two critical processes: (a) the interplay between antecedent soil moisture conditions and peak river flow, and (b) how the impact of sea level rise (SLR) on storm surge and river flood distribution alters the CF in complex estuaries. As the study area, we selected the Delaware Bay and River, a shallow and convergent estuary in the US Mid‐Atlantic region—where flood hazards during a CF can become more significant than the surge and river flood processes occurring in isolation. For the focal event for the study, we selected Hurricane Irene (2011) because it reportedly produced the most extreme CF over the past two decades in the same region. Ultimately, our results illustrated that the potential changes to the catchment and bay characteristics from the global temperature increase and SLR could significantly modulate the fluvial‐coastal CF variability. The potential increase in global temperature and rainfall intensity might not always exacerbate the CF.

54 ENVIRONMENTAL SCIENCES↗

Foliar element determination from field survey in association with the National Ecological Observatory Network Airborne Observation Platform survey, East River, Colorado 2018

The purpose of this dataset is to support research aimed at understanding the coupling between hydrologic and biogeochemical processes at watershed scale, particularly the relationship between aboveground vegetation characteristics and subsurface soil properties. These data are intended to inform and calibrate models of catchment-scale biogeochemical fluxes, including rock-derived nutrient cycling, and they were procured to address the following questions: (1) What is the distribution of vegetation characteristics across the study catchments? (2) Are foliar concentrations of rock-derived nutrients related to underlying lithology and soil availability, or are these signals masked by biotic nutrient cycling and retention processes?This data package contains foliar elemental data collected during the 2018 National Ecological Observatory Networks (NEON) Airborne Observation Platform (AOP) imaging spectroscopy and lidar surveys in Gunnison County, Colorado. Folair samples were collected across the East River, Washington Gulch, Slate River, and Coal Creek watersheds and contain a mixture of vegetation including meadow, shrub, and tree foliar samples. The samples were processed using aqua regia digestion and analyzed for elemental determination on inductively coupled plasma optical emission spectrometry (ICP-OES).The data package includes: (1) raw foliar elemental data files in CSV and PDF formats, (2) quality control certificates in PDF format, and (3) an aggregated CSV file containing all elemental measurements compiled across samples. No specialized software is required to access or use these files.

2018 National Ecological Observatory Network Campa↗

The importance of explicitly representing the streambed in watershed models

Abstract The streambed is the critical interface between the aquatic and terrestrial systems and hosts important biogeochemical hot spots within river corridors. Although the streambed characteristics are significantly different from those of its surrounding soil, the streambed itself has not been explicitly represented in watershed models. Here, we explicitly incorporated a streambed layer into an integrated hydrologic model through model parameterization and discretization. We examined the hydrological effects of streambed characteristics, including hydraulic conductivity ( K ), layer thickness, and resolution, on the exchange fluxes across the streambed as well as the streamflow at the watershed outlet. The numerical experiments were performed in the American River Watershed, a headwater, mountainous watershed within the Yakima River Basin in central Washington. Despite having a negligible effect on the watershed streamflow, an explicit representation of the streambed with distinctive properties dramatically changed the magnitude and variability of the exchange flux. In general, a larger streambed K along with a thicker streambed layer induced larger exchange fluxes. The exchange flux was most sensitive to the streambed resolution. A finer streambed resolution increased exchange fluxes per unit area while reducing the overall exchange volumes across the entire streambed. The amount of baseflow decreased by 6% as the streambed resolution increased from 250 to 50 m. This finding is important because these hydrological changes may, in turn, affect the exchange of nutrients and contaminants between surface water and groundwater and the associated biogeochemical processes. Our work demonstrated the importance of representing streambeds in fully distributed, process‐based watershed models to better capture the exchange flow dynamics in river corridors.

54 ENVIRONMENTAL SCIENCES↗

On the similarity of hillslope hydrologic function: a clustering approach based on groundwater changes

Abstract. Hillslope similarity is an active topic in hydrology because of its importance in improving our understanding of hydrologic processes and enabling comparisons and paired studies. In this study, we propose a holistic bottom-up hillslope clustering based on a region's integrative hydrodynamic response quantified by the seasonal changes in groundwater levels ΔP. The main advantage of the ΔP clustering is its ability to capture recharge and discharge processes. We test the performance of the ΔP clustering by comparing it to seven other common hillslope clustering approaches. These include clustering approaches based on the aridity index, topographic wetness index, elevation, land cover, and machine-learning that jointly integrate multiple data. We assess the ability of these clustering approaches to identify and categorize hillslopes with similar static characteristics, hydroclimate, land surface processes, and subsurface dynamics in a mountainous watershed – the East River – located in the headwaters of the Upper Colorado River Basin. The ΔP clustering performs very well in identifying hillslopes with six out of the nine characteristics studied. The variability among clusters as quantified by the coefficient of variation (0.2) is less in the ΔP and the machine learning approaches than in the others (> 0.3 for TWI, elevation, and land cover). We further demonstrate the robustness of the ΔP clustering by testing its ability to predict hillslope responses to wet and dry hydrologic conditions, of which it performs well when based on average conditions.

54 ENVIRONMENTAL SCIENCES↗

Surface parameters and bedrock properties covary across a mountainous watershed: Insights from machine learning and geophysics

Bedrock property quantification is critical for predicting the hydrological response of watersheds to climate disturbances. Estimating bedrock hydraulic properties over watershed scales is inherently difficult, particularly in fracture-dominated regions. Our analysis tests the covariability of above- and belowground features on a watershed scale, by linking borehole geophysical data, near-surface geophysics, and remote sensing data. We use machine learning to quantify the relationships between bedrock geophysical/hydrological properties and geomorphological/vegetation indices and show that machine learning relationships can estimate most of their covariability. Although we can predict the electrical resistivity variation across the watershed, regions of lower variability in the input parameters are shown to provide better estimates, indicating a limitation of commonly applied geomorphological models. Our results emphasize that such an integrated approach can be used to derive detailed bedrock characteristics, allowing for identification of small-scale variations across an entire watershed that may be critical to assess the impact of disturbances on hydrological systems.

58 GEOSCIENCES↗

ParFlow-CLM model simulation files for Maina et al., Journal of Hydrology, 2022

This dataset contains the files to run a ParFlow-CLM integrated hydrologic model simulation for Maina et al., HESS, 2022. It also contains the associated daily pressure output of those simulations. Simulations are for a hillslope-similarity approach based on seasonal groundwater changes in the East River, Colorado. Comparisons are made to different clustering, or functional zonation approaches. We assess the ability of these clustering approaches to identify and categorize hillslopes with similar static characteristics, hydroclimate, land surface processes, and subsurface dynamics in a mountainous watershed. ParFlow binary files (.pfb) are model specific, and can be modified/viewed with conversion to .sa, .silo, or .vtk file formats. ParFlow input scripts are in the .tcl file format. Associated post-processing scripts are included as .f90 files.

54 ENVIRONMENTAL SCIENCES↗

Role of underlying surface, rainstorm and antecedent wetness condition on flood responses in small and medium sized watersheds in the Yangtze River Delta region, China

Floods are becoming more frequent and are hard to control due to the shortage of water conservancy projects in small and medium sized basins, especially in developing regions. Understanding the hydrologic responses and estimated flood characteristics to storm events can help to predict flood disasters and form better effective mitigation and adaptation strategies. Here, using observations of several representative watersheds and Artificial Neural Networks (ANN) and Principal Component Regression (PCR) models, we conducted data-driven analyses to examine the flood responding characteristics. We quantified the relative contributions of the influencing factors to the variation of each flood characteristic. Statistical analysis of the observations shows that the drainage area plays a key role in determining the distribution of lag time and peak discharge. Rainstorm variability has direct influence on floods, and typhoon-induced rainstorms with high total rainfall and rainfall intensity generate higher lag time, flood peak, unit discharge and runoff depth, but lower runoff coefficient. The ANN and PCR models accurately predicted the variations of flood features using the driving factors including physical geographical characteristics, rainstorm features, and antecedent condition. Physical geographic characteristics are key influential factors of lag time, flood peak and runoff coefficient, while the rainstorm features control the magnitude of unit discharge and runoff depth. These results indicate that floods are mainly affected by rainstorm features and physical geographic characteristics in the Yangtze River delta, and it might become more damaging with the increasing rainfall extremes and sprawling impervious surfaces in a changing environment.

54 ENVIRONMENTAL SCIENCES↗

Ecohydrology of urban environments

Urban watersheds include a gradient of highly managed to unmanaged ecosystems that vary in vegetation cover, built and natural drainage systems, and impervious cover. A distinct difference to undeveloped ecosystems is the dominance of material and energy import and export, the disruption of natural catenae, the covariation of soils, terrain and canopy conditions. In this chapter, we discuss the distinct characteristics of urban ecohydrology compared to non-urban systems. We also investigate emergent principles of unmanaged watersheds that underscore the promotion of ecohydrological resilience, and the need to abstract and adapt these principles to support the goal-oriented restoration of impaired urban ecosystems.

42 ENGINEERING↗

Advanced monitoring of soil-vegetation co-dynamics reveals the successive controls of snowmelt on soil moisture and on plant seasonal dynamics in a mountainous watershed

Evaluating the interactions between above- and below-ground processes is important to understand and quantify how ecosystems respond differently to atmospheric forcings and/or perturbations and how this depends on their intrinsic characteristics and heterogeneity. Improving such understanding is particularly needed in snow-impacted mountainous systems where the complexity in water and carbon storage and release arises from strong heterogeneity in meteorological forcing and terrain, vegetation and soil characteristics. This study investigates spatial and temporal interactions between terrain, soil moisture, and plant seasonal dynamics at the intra- and inter-annual scale along a 160 m long mountainous, non-forested hillslope-to-floodplain system in the upper East River Watershed in the upper Colorado River Basin. To this end, repeated UAV-based multi-spectral aerial imaging, ground-based soil electrical resistivity imaging, and soil moisture sensors were used to quantify the interactions between above and below-ground compartments. Results reveal significant soil-plant co-dynamics. The spatial variation and dynamics of soil water content and electrical conductivity, driven by topographic and soil intrinsic characteristics, correspond to distinct plant types, with highest plant productivity in convergent areas. Plant productivity in heavy snow years benefited from more water infiltration as well as a shallow groundwater table depth. In comparison, low snowpack years with an early first bare-ground date, which are linked to an early increase in plant greenness, imply a short period of saturated conditions that leads to lower average and maximum greenness values during the growing season. Overall, these results emphasize the strong impact of snowpack dynamics, and terrain and subsurface characteristics on the heterogeneity in plant type and seasonal dynamics.

54 ENVIRONMENTAL SCIENCES↗

The impact of forest-controlled snow variability on late-season streamflow varies by climatic region and forest structure

Previous studies have documented how forests influence snow at fine spatial scales, but none have documented the influence that existing forest-snow variability has on streamflow. Here to test how much forest-controlled snow variability influences streamflow, a tiling parameterization based on classifications from high-resolution (1–3 m) vegetation maps was incorporated into the Distributed Hydrology and Soil Vegetation Model (DHSVM). Within each grid cell (90–150 m), the tiling parameterization simulated forest-snow variability with four independently evolving snowpacks. Each tile had unique radiation conditions to represent conditions underneath the canopy, in exposed areas, and along north- and south-facing forest edges. This tiled parameterization was used to test where and when detailed forest-snow modelling should be considered further and where and when the impacts are too small to be worth the effort. To test this, tiled model simulations of streamflow were compared to non-tiled model simulations in the Sierra Nevada, CA, the Jemez Mountains, NM, and the Eastern Cascades, WA. In Tuolumne, CA, the tiled model simulated little difference in grid cell average SWE, and late-season streamflow decreased by only 3%–4% compared to the non-tiled model. In Jemez, NM, the tiled model decreased late-season streamflow by 18% due to increased sublimation. In Chiwawa, WA, the tiled model increased late-season streamflow by 15% due to high shortwave radiation attenuation and less longwave radiation enhancement from the forest. Furthermore, within the Chiwawa, a substantial silvicultural practice was synthetically implemented to increase the north-facing edge's fractional area. This silvicultural experiment, which used the same fractional forest area in all simulations increased late-season streamflow by 35% compared to tiled model simulations that did not represent forest edges. In conclusion, representing forest-SWE variability had an effect on late-season streamflow in some watersheds but not in others based on the fractional area of the forest edges, forest characteristics, and climate conditions.

54 ENVIRONMENTAL SCIENCES↗