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DOE OSTI2025

AI-powered exploration of molecular vibrations, phonons, and spectroscopy

The vibrational dynamics of molecules and solids play a critical role in defining material properties, particularly their thermal behaviors. However, theoretical calculations of these dynamics are often computationally intensive, while experimental approaches can be technically complex and resource-demanding. Recent advancements in data-driven artificial intelligence (AI) methodologies have substantially enhanced the efficiency of these studies. This review explores the latest progress in AI-driven methods for investigating atomic vibrations, emphasizing their role in accelerating computations and enabling rapid predictions of lattice dynamics, phonon behaviors, molecular dynamics, and vibrational spectra. Key developments are discussed, including advancements in databases, structural representations, machine-learning interatomic potentials, graph neural networks, and other emerging approaches. Compared to traditional techniques, AI methods exhibit transformative potential, dramatically improving the efficiency and scope of research in materials science. The review concludes by highlighting the promising future of AI-driven innovations in the study of atomic vibrations.

Han, Bowen [Oak Ridge National Laboratory (ORNL), ↗

DOE OSTI2019

Nuclear Physics Network Requirements Review Report

The Energy Sciences Network (ESnet) is the Office of Science’s high-performance network user facility, delivering highly reliable data transport capabilities optimized for the requirements of data-intensive science. In essence, ESnet is the circulatory system that enables the U.S. Department of Energy (DOE) science mission by connecting each and every DOE lab and its user facilities. ESnet is funded and stewarded by the Advanced Scientific Computing Research (ASCR) Program, and managed and operated by the Scientific Networking Division at Lawrence Berkeley National Laboratory (LBNL). ESnet is widely regarded as a global leader in the research and education networking community. ESnet connects DOE national laboratories, user facilities, and major experiments so scientists can use remote instruments and computing resources as well as share data with collaborators, transfer large data sets, and access distributed data repositories. While ESnet provides network connectivity, it cannot be characterized as an internet service provider as it is specifically built to provide a range of network services that are tailored to meet the unique requirements of DOE’s data-intensive science. In short, ESnet’s mission is to enable and accelerate scientific discovery by delivering unparalleled network infrastructure, capabilities, and tools. ESnet’s vision is summarized by these three points. 1. Scientific progress will be completely unconstrained by the physical location of instruments, people, computational resources, or data. 2. Collaborations at every scale, in every domain, will have the information and tools they need to achieve maximum benefit from scientific facilities, global networks, and emerging network capabilities. 3. ESnet will foster the partnerships and pioneer the technologies necessary to ensure that these transformations occur. In May 2019, ESnet and the Office of Nuclear Physics (NP) of the DOE Office of Science organized an ESnet requirements review of NP-supported activities. Preparation for this event included identification of key stakeholders to the process: program and facility management, research groups, technology providers, and a number of external observers. These individuals were asked to prepare formal case study documents about their relationship to the NP program to build a complete understanding of the current, near-term, and long-term status, expectations, and processes that will support the science going forward. A series of pre-planning meetings better prepared case study authors for this task and facilitated a smooth transition to the in-person review.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2020

Nuclear Physics Network Requirements Review Report

97 MATHEMATICS AND COMPUTING↗

NASA NTRS1979

Kinetic energy budgets in areas of convection

Synoptic scale budgets of kinetic energy are computed using 3 and 6 h data from three of NASA's Atmospheric Variability Experiments (AVE's). Numerous areas of intense convection occurred during the three experiments. Large kinetic energy variability, with periods as short as 6 h, is observed in budgets computed over each entire experiment area and over limited volumes that barely enclose the convection and move with it. Kinetic energy generation and transport processes in the smaller volumes are often a maximum when the enclosed storms are near peak intensity, but the nature of the various energy processes differs between storm cases and seems closely related to the synoptic conditions. A commonly observed energy budget for peak storm intensity indicates that generation of kinetic energy by cross-contour flow is the major energy source while dissipation to subgrid scales is the major sink. Synoptic scale vertical motion transports kinetic energy from lower to upper levels of the atmosphere while low-level horizontal flux convergence and upper-level horizontal divergence also occur. Spatial fields of the energy budget terms show that the storm environment is a major center of energy activity for the entire area.

Fuelberg, H. E.↗

NASA NTRS1987

Image analysis of particle field by means of computed tomography

In order to visualize and investigate spray structures, computed tomography technique is applied to analyze droplet information. From the transmitted light intensity through the spray and/or the data of particle size distribution obtained from a Fraunhofer diffraction principle, the quantitative volume of spray droplet or local particle size was calculated and the reconstruction of spray structures was made. The background of computed tomography is described along with some experimental results of the structure of intermittent spray such as diesel spray.

Nakayama, Mitsushige↗

DOE OSTI2014

Multivariate analysis of factors predicting prostate dose in intensity-modulated radiotherapy

We conducted a multivariate analysis to determine relationships between prostate radiation dose and the state of surrounding organs, including organ volumes and the internal angle of the levator ani muscle (LAM), based on cone-beam computed tomography (CBCT) images after bone matching. We analyzed 270 CBCT data sets from 30 consecutive patients receiving intensity-modulated radiation therapy for prostate cancer. With patients in the supine position on a couch with the HipFix system, data for center of mass (COM) displacement of the prostate and the state of individual organs were acquired and compared between planning CT and CBCT scans. Dose distributions were then recalculated based on CBCT images. The relative effects of factors on the variance in COM, dose covering 95% of the prostate volume (D{sub 95%}), and percentage of prostate volume covered by the 100% isodose line (V{sub 100%}) were evaluated by a backward stepwise multiple regression analysis. COM displacement in the anterior-posterior direction (COM{sub AP}) correlated significantly with the rectum volume (δVr) and the internal LAM angle (δθ; R = 0.63). Weak correlations were seen for COM in the left-right (R = 0.18) and superior-inferior directions (R = 0.31). Strong correlations between COM{sub AP} and prostate D{sub 95%} and V{sub 100%} were observed (R ≥ 0.69). Additionally, the change ratios in δVr and δθ remained as predictors of prostate D{sub 95%} and V{sub 100%}. This study shows statistically that maintaining the same rectum volume and LAM state for both the planning CT simulation and treatment is important to ensure the correct prostate dose in the supine position with bone matching.

61 RADIATION PROTECTION AND DOSIMETRY↗

DOE OSTI2015

TU-AB-303-08: GPU-Based Software Platform for Efficient Image-Guided Adaptive Radiation Therapy

Purpose: In this study, we develop an integrated software platform for adaptive radiation therapy (ART) that combines fast and accurate image registration, segmentation, and dose computation/accumulation methods. Methods: The proposed system consists of three key components; 1) deformable image registration (DIR), 2) automatic segmentation, and 3) dose computation/accumulation. The computationally intensive modules including DIR and dose computation have been implemented on a graphics processing unit (GPU). All required patient-specific data including the planning CT (pCT) with contours, daily cone-beam CTs, and treatment plan are automatically queried and retrieved from their own databases. To improve the accuracy of DIR between pCT and CBCTs, we use the double force demons DIR algorithm in combination with iterative CBCT intensity correction by local intensity histogram matching. Segmentation of daily CBCT is then obtained by propagating contours from the pCT. Daily dose delivered to the patient is computed on the registered pCT by a GPU-accelerated superposition/convolution algorithm. Finally, computed daily doses are accumulated to show the total delivered dose to date. Results: Since the accuracy of DIR critically affects the quality of the other processes, we first evaluated our DIR method on eight head-and-neck cancer cases and compared its performance. Normalized mutual-information (NMI) and normalized cross-correlation (NCC) computed as similarity measures, and our method produced overall NMI of 0.663 and NCC of 0.987, outperforming conventional methods by 3.8% and 1.9%, respectively. Experimental results show that our registration method is more consistent and roust than existing algorithms, and also computationally efficient. Computation time at each fraction took around one minute (30–50 seconds for registration and 15–25 seconds for dose computation). Conclusion: We developed an integrated GPU-accelerated software platform that enables accurate and efficient DIR, auto-segmentation, and dose computation, thus supporting an efficient ART workflow. This work was supported by NIH/NCI under grant R42CA137886.

60 APPLIED LIFE SCIENCES↗

NASA NTRS2018

Modeling the Proton Radiation Belt With Van Allen Probes Relativistic Electron-Proton Telescope Data

An empirical model of the proton radiation belt is constructed from data taken during 2013-2017 by the Relativistic Electron-Proton Telescopes on the Van Allen Probes satellites. The model intensity is a function of time, kinetic energy in the range 18-600 megaelectronvolts, equatorial pitch angle, and L shell of proton guiding centers. Data are selected, on the basis of energy deposits in each of the nine silicon detectors, to reduce background caused by hard proton energy spectra at low L. Instrument response functions are computed by Monte Carlo integration, using simulated proton paths through a simplified structural model, to account for energy loss in shielding material for protons outside the nominal field of view. Overlap of energy channels, their wide angular response, and changing satellite orientation require the model dependencies on all three independent variables be determined simultaneously. This is done by least squares minimization with a customized steepest descent algorithm. Model uncertainty accounts for statistical data error and systematic error in the simulated instrument response. A proton energy spectrum is also computed from data taken during the 8 January 2014 solar event, to illustrate methods for the simpler case of an isotropic and homogeneous model distribution. Radiation belt and solar proton results are compared to intensities computed with a simplified, on-axis response that can provide a good approximation under limited circumstances.

Selesnick, R. S.↗

NASA NTRS2012

CFD Simulations for the Effect of Unsteady Wakes on the Boundary Layer of a Highly Loaded Low-Pressure Turbine Airfoil (L1A)

This report is the third part of a three-part final report of research performed under an NRA cooperative Agreement contract. The first part was published as NASA/CR-2012-217415. The second part was published as NASA/CR-2012-217416. The study of the very high lift low-pressure turbine airfoil L1A in the presence of unsteady wakes was performed computationally and compared against experimental results. The experiments were conducted in a low speed wind tunnel under high (4.9%) and then low (0.6%) freestream turbulence intensity for Reynolds number equal to 25,000 and 50,000. The experimental and computational data have shown that in cases without wakes, the boundary layer separated without reattachment. The CFD was done with LES and URANS utilizing the finite-volume code ANSYS Fluent (ANSYS, Inc.) under the same freestream turbulence and Reynolds number conditions as the experiment but only at a rod to blade spacing of 1. With wakes, separation was largely suppressed, particularly if the wake passing frequency was sufficiently high. This was validated in the 3D CFD efforts by comparing the experimental results for the pressure coefficients and velocity profiles, which were reasonable for all cases examined. The 2D CFD efforts failed to capture the three dimensionality effects of the wake and thus were less consistent with the experimental data. The effect of the freestream turbulence intensity levels also showed a little more consistency with the experimental data at higher intensities when compared with the low intensity cases. Additional cases with higher wake passing frequencies which were not run experimentally were simulated. The results showed that an initial 25% increase from the experimental wake passing greatly reduced the size of the separation bubble, nearly completely suppressing it.

Vinci, Samuel, J.↗

DOE OSTI2018

A simple model for estimating changes in rainfall erosivity caused by variations in rainfall patterns

Highlights: • A simple relationship was developed for predicting daily erosivity in changing climates. • The relationship depends on precipitation amount and maximum 0.5-h intensity I{sub 0.5} . • The relationship was calibrated using measured climate data and had a R{sup 2} of 0.99. • Simulated daily and annual erosivities were predicted with a R{sup 2} of 0.99 using the relationship. • The relationship was tested using I{sub 24}, showing a R{sup 2} of 0.78 for the simulated data. A major challenge when coupling soil loss models with precipitation forecasts from Global Circulation Models (GCMs) is that their time resolutions do not generally agree. Precipitation forecasts from GCM must be scaled down; however, the distribution of the rainfall intensity, which can affect soil loss as much as precipitation amounts, is usually not considered in this process. Therefore, the objective of this study was to develop a statistical equation for computing event-based rainfall erosivity under changing precipitation patterns using the least amount of information possible. For this purpose, an empirical equation for predicting event-based rainfall erosivity was developed using the product of the total precipitation P and the maximum 0.5-h rainfall intensity, I{sub 0.5}. This equation was calibrated using measured precipitation data from 28 sites in Central Chile and then tested with simulated data with different rainfall patterns from the CLIGEN (CLImate GENerator) weather generator. More than 53,000 rainfall events were analyzed, where the equation consistently provided R{sup 2} values of 0.99 for every dataset used, revealing its robustness when used in potential climate change scenarios in the study site. However, because computing I{sub 0.5} requires estimating precipitation at a high time resolution, the relationship was recalibrated and tested using 1 through 24-h maximum rainfall intensities. Using these intensities, the equation provided erosivity estimates with R{sup 2} ranging from 0.78 to 0.99, where better results were obtained as the resolution of the data increased. This study provides the methodology for building and testing the proposed equation and discusses its advantages and limitations.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2019

Forecasting district-scale energy dynamics through integrating building network and long short-term memory learning algorithm

With the development of data-driven techniques, building energy prediction on a district level has attracted increasing attention in recent years for revealing energy use patterns and reduction potentials. However, data acquisition in large building groups is difficult and adjacent buildings also interact with each other. To reduce data cost and incorporate the inter-building impact with the data-driven building energy model, this study proposes a deep learning predictive approach that fuses the building network model with a long short-term memory learning model for district-scale building energy modeling. The building network was constructed based on correlations between the energy use intensity of buildings, which can significantly reduce the computational complexity of the deep learning models for energy dynamic prediction. Five typical building groups with energy use data from 2015 to 2018 on two institutional campuses were selected to perform the validation experiment with TensorFlow. Based on the prediction error assessments, the results suggest that for total building energy use intensity prediction, the proposed model can achieve a mean absolute percentage error of 6.66% and a root mean square error of 0.36 kWh/m 2 , compared to 12.05% and 0.63 kWh/m 2 of the conventional artificial neural network model and to 11.06% and 0.89 kWh/m 2 for the support vector regression model.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

DOE OSTI2019

pnnl/metagenomic_analysis

Metagenomic analysis is a computationally intensive task, this problem is compounded when many hundreds of samples need to be analyzed. We needed a program that would process the metagenomic sequencing data, manage computing resources, and combine the results into a unified output. We developed a script that prepares raw metagenomic sequencing data for analysis, configures analysis parameters, launches analysis jobs, keeps track of analysis progress, and combines analysis output. The analysis itself itself is done by the functionality provided by mothur (https://www.mothur.org/).

Avila, Andrew↗

NASA NTRS1970

Elimination of redundancy in telemetered data

Procedure for estimating the intensity of a Poisson process can be readily programmed for a digital computer, and does not require an a priori probability space. Reduction of the sampling rate is possible without sacrificing significant information.

Vu-Son, C.↗

DOE OSTI2014

A Study of Successive Over-relaxation Method Parallelization over Modern HPC Languages

Successive over-relaxation (SOR) is a computationally intensive, yet extremely important iterative solver for solving linear systems. Due to recent trends of exponential growth in amount of data generated and increasing problem sizes, serial platforms have proved to be insucient in providing the required computational power. In this paper, we present parallel implementations of red-black SOR method using three modern programming languages namely Chapel, D and Go. We employ SOR method for solving 2D steady-state heat conduction problem. We discuss the optimizations incorporated and the features of these languages which are crucial for improving the program performance. Experiments have been performed using 2, 4, and 8 threads and performance results are compared with serial execution. The analysis of results provides important insights into working of SOR method.

Mittal, Sparsh↗

DOE OSTI2017

High-Performance Key-Value Store on OpenSHMEM

Recently, there has been a growing interest in enabling fast data analytics by leveraging system capabilities from large-scale high-performance computing (HPC) systems. OpenSHMEM is a popular run-time system on HPC systems that has been used for large-scale compute-intensive scientific applications. In this paper, we propose to leverage OpenSHMEM to design a distributed in-memory key-value store for fast data analytics. Accordingly, we have developed SHMEMCache on top of OpenSHMEM to leverage its symmetric global memory, efficient one-sided communication operations and general portability. We have also evaluated SHMEMCache through extensive experimental studies. Our results show that SHMEMCache has accomplished significant performance improvements over hte original Memcached in terms of latency and throughput. Our evaluation on the Titan supercomputer has also demonstrated that SHMEMCache can scale to 1024 nodes.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Locally adaptive artificial viscosity strategies for Lagrangian hydrodynamics

To accurately model inviscid flow with shock waves using staggered-grid Lagrangian hydrodynamics, artificial viscosity is introduced to convert kinetic energy into internal energy, thereby providing a mechanism to generate the required entropy increase across shocks. In this paper, we propose a new method for constructing an adaptive, artificial viscosity in the context of one-dimensional, staggered-grid Lagrangian hydrodynamics. Our adaptive, artificial viscosity is defined in terms of two parameters that depend on density locally in a neighborhood around a shock, and hence, vary cell-by-cell. Our methodology is based on building a reference set of pre-computed optimal, globally constant artificial viscosity coefficients for a family of isolated shock test problems. For arbitrary flows, the evaluation of the unknown coefficients is automated by first estimating shock intensity locally, and second computing the corresponding adaptive parameter value via interpolation over the data from the pre-computed reference set of optimal, globally constant coefficient values. To illustrate the performance of our new approach, we compare our results against two existing methods. The first method is a limiter-based approach, which relies on estimating velocity gradients of the flow, and the second method is utilized in several commercial codes. Finally, we demonstrate that our new adaptive methodology produces more accurate results for a variety of tests with propagating shock waves, as well as for the aforementioned family of isolated shock problems.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2021

MAPA: Multi-Accelerator Pattern Allocation Policy for Multi-Tenant GPU Servers

Multi-accelerator servers are increasingly being deployed in shared multi-tenant environments (such as in cloud data centers) in order to meet the demands of large-scale compute-intensive workloads. In addition, these accelerators are increasingly being inter-connected in complex topologies and workloads are exhibiting a wider variety of inter-accelerator communication patterns. However, existing al-location policies are ill-suited for these emerging use-cases. Specifically, this work identifies that multi-accelerator workloads are commonly fragmented leading to reduced bandwidth and increased latency for inter-accelerator communication. We propose Multi-Accelerator Pattern Allocation (MAPA), a graph pattern mining approach towards providing generalized allocation support for allocating multi-accelerator workloads on multi-accelerator servers. We demonstrate that MAPA is able to improve the execution time of multi-accelerator workloads and that MAPA is able to provide generalized benefits across various accelerator topologies. Finally, we demonstrate a speedup of 12.4% for75th percentile of jobs with the worst case execution time reduced by up to 35% against baseline policy using MAPA.

Ranganath, Kiran↗

DOE OSTI2020

Toward fusion plasma scenario planning for NSTX-U using machine-learning-accelerated models

One of the most promising devices for realizing power production through nuclear fusion is the tokamak. To maximize performance, it is preferable that tokamak reactors achieve advanced operating scenarios characterized by good plasma confinement, improved magnetohydrodynamic (MHD) stability, and a largely non-inductively driven plasma current. Such scenarios could enable steady-state reactor operation with high \emph{fusion gain} --- the ratio of produced fusion power to the external power provided through the plasma boundary. Precise and robust control of the evolution of the plasma boundary shape as well as the spatial distribution of the plasma current, density, temperature, and rotation will be essential to achieving and maintaining such scenarios. The complexity of the evolution of tokamak plasmas, arising due to nonlinearities and coupling between various parameters, motivates the use of model-based control algorithms that can account for the system dynamics. In this work, a learning-based accelerated model trained on data from the National Spherical Torus Experiment Upgrade (NSTX-U) is employed to develop planning and control strategies for regulating the density and temperature profile evolution around desired trajectories. The proposed model combines empirical scaling laws developed across multiple devices with neural networks trained on empirical data from NSTX-U and a database of first-principles-based computationally intensive simulations. The reduced execution time of the accelerated model will enable practical application of optimization algorithms and reinforcement learning approaches for scenario planning and control development. An initial demonstration of applying optimization approaches to the learning-based model is presented, including a strategy for mitigating the effect of leaving the finite validity range of the accelerated model. The approach shows promise for actuator planning between experiments and in real-time.

machine learning↗