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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 361 records · Page 20
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Inferring protein expression changes from mRNA in Alzheimer’s dementia using deep neural networks

Identifying the molecular systems and proteins that modify the progression of Alzheimer’s disease and related dementias (ADRD) is central to drug target selection. However, discordance between mRNA and protein abundance, and the scarcity of proteomic data, has limited our ability to advance candidate targets that are mainly based on gene expression. Therefore, by using a deep neural network that predicts protein abundance from mRNA expression, here we attempt to track the early protein drivers of ADRD. Specifically, by applying the clei2block deep learning model to 1192 brain RNA-seq samples, we identify protein modules and disease-associated expression changes that were not directly observed at the mRNA level. Moreover, pseudo-temporal trajectory inference based on the predicted proteome became more closely correlated with cognitive decline and hippocampal atrophy compared to RNA-based trajectories. This suggests that the predicted changes in protein expression could provide a better molecular representation of ADRD progression. Furthermore, overlaying clinical traits on protein pseudotime trajectory identifies protein modules altered before cognitive impairment. These results demonstrate how our method can be used to identify potential early protein drivers and possible drug targets for treating and/or preventing ADRD.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2024

Learning stochastic dynamics and predicting emergent behavior using transformers

We show that a neural network originally designed for language processing can learn the dynamical rules of a stochastic system by observation of a single dynamical trajectory of the system, and can accurately predict its emergent behavior under conditions not observed during training. We consider a lattice model of active matter undergoing continuous-time Monte Carlo dynamics, simulated at a density at which its steady state comprises small, dispersed clusters. We train a neural network called a transformer on a single trajectory of the model. The transformer, which we show has the capacity to represent dynamical rules that are numerous and nonlocal, learns that the dynamics of this model consists of a small number of processes. Forward-propagated trajectories of the trained transformer, at densities not encountered during training, exhibit motility-induced phase separation and so predict the existence of a nonequilibrium phase transition. Transformers have the flexibility to learn dynamical rules from observation without explicit enumeration of rates or coarse-graining of configuration space, and so the procedure used here can be applied to a wide range of physical systems, including those with large and complex dynamical generators.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Environmental damping and vibrational coupling of confined fluids within isolated carbon nanotubes

Abstract Because of their large surface areas, nanotubes and nanowires demonstrate exquisite mechanical coupling to their surroundings, promising advanced sensors and nanomechanical devices. However, this environmental sensitivity has resulted in several ambiguous observations of vibrational coupling across various experiments. Herein, we demonstrate a temperature-dependent Radial Breathing Mode (RBM) frequency in free-standing, electron-diffraction-assigned Double-Walled Carbon Nanotubes (DWNTs) that shows an unexpected and thermally reversible frequency downshift of 10 to 15%, for systems isolated in vacuum. An analysis based on a harmonic oscillator model assigns the distinctive frequency cusp, produced over 93 scans of 3 distinct DWNTs, along with the hyperbolic trajectory, to a reversible increase in damping from graphitic ribbons on the exterior surface. Strain-dependent coupling from self-tensioned, suspended DWNTs maintains the ratio of spring-to-damping frequencies, producing a stable saturation of RBM in the low-tension limit. In contrast, when the interior of DWNTs is subjected to a water-filling process, the RBM thermal trajectory is altered to that of a Langmuir isobar and elliptical trajectories, allowing measurement of the enthalpy of confined fluid phase change. These mechanisms and quantitative theory provide new insights into the environmental coupling of nanomechanical systems and the implications for devices and nanofluidic conduits.

36 MATERIALS SCIENCE↗
DOE OSTI2021

Persistent meanders and eddies lead to quasi-steady Lagrangian transport patterns in a weak western boundary current

The Brazil Current (BC) is a weak western boundary current flowing along the Southwestern Atlantic Ocean. It is frequently described as a flow with intense mesoscale activity and relatively low volume transport between 5.0 and 10.0 Sv. We use a 13-year eddy-resolving primitive-equation simulation to show that the presence of persistent meanders and eddies leads to characteristic quasi-steady Lagrangian transport patterns, aptly extracted through climatological Lagrangian Coherent Structures (cLCS). The cLCS position the surface expression of the BC core along the 2000-m isobath, in excellent visual agreement with high resolution satellite sea-surface temperature and the model Eulerian mean velocity. The cLCS deformation pattern also responds to zonally persistent cross-shelf SSH transition from positive (high) values near coastline to low (negative) values between 200- and 2000-m and back to positive (high) offshore from the 2000-m isobath. Zonally-paired cyclonic and anticyclonic structures are embedded in this transition, also causing the cLCS to deform into chevrons. An efficient transport barrier is identified close to the 200-m isobath confirmed by limited inshore movement of drogued drifters and accurately indicated by an along slope maxima of climatological strength of attraction. We also show that the persistent cyclonic and anticyclonic structures may induce localized cross-shelf transport. Regions of low climatological strength of attraction coincide with large shelves and with stagnant synthetic trajectories. We also show that cLCS accurately depict trajectories initiated at the location of Chevron’s spill (November 2011) as compared to synthetic and satellite-tracked trajectories, and the outline of the oil from that accident. There is also an agreement between the large-scale oil slicks reaching the Brazilian beaches (from August 2019 to February 2020) and the strength of climatological attraction at the coast. Our work also clarifies the influence of persistent mesoscale structures on the regional circulation. The identification and quantitative description of climatological Lagrangian coherent structures is expected to improve the effectiveness of future emergency response to oil spills, contingency planning, rescue operations, larval and fish connectivity assessment, drifter launch strategies, waste pollutant and marine debris dispersion and destination.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Energy landscapes from cryo-EM snapshots: a benchmarking study

Abstract Biomolecules undergo continuous conformational motions, a subset of which are functionally relevant. Understanding, and ultimately controlling biomolecular function are predicated on the ability to map continuous conformational motions, and identify the functionally relevant conformational trajectories. For equilibrium and near-equilibrium processes, function proceeds along minimum-energy pathways on one or more energy landscapes, because higher-energy conformations are only weakly occupied. With the growing interest in identifying functional trajectories, the need for reliable mapping of energy landscapes has become paramount. In response, various data-analytical tools for determining structural variability are emerging. A key question concerns the veracity with which each data-analytical tool can extract functionally relevant conformational trajectories from a collection of single-particle cryo-EM snapshots. Using synthetic data as an independently known ground truth, we benchmark the ability of four leading algorithms to determine biomolecular energy landscapes and identify the functionally relevant conformational paths on these landscapes. Such benchmarking is essential for systematic progress toward atomic-level movies of continuous biomolecular function.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Land-use and atmospheric shifts jointly amplify U.S. drought-driven crop losses

Agricultural drought (AD) poses a major threat to food security, yet its future risk remains uncertain under co-evolving atmospheric conditions and land-use trajectories. Using an integrated, multi-sector modeling framework, we project AD risks for major crops across the contiguous United States (CONUS) through 2055 under a range of plausible futures that capture thermodynamic changes and land-use and land-cover change (LULCC) trajectories. Model projections reveal that drought-driven crop production losses increase sharply by nearly 60% for corn, 250% for wheat, and 135% for soybean relative to historical levels. The primary drivers of these increases, which include atmospheric shifts and LULCC, vary by region and crop type. LULCC acting as an important risk amplifier in regions experiencing cropland expansion into drought-prone regions, such as the Great Plains and northwestern U.S. Wheat exhibits the largest projected loss increases, a result that remains robust across scenarios. These findings highlight that interactions between atmospheric conditions and land-use trajectories shape future agricultural drought risk and should be jointly considered to support effective adaptation and food-system planning.

Yao, Lili↗
DOE OSTI2022

The role of breakup and coalescence in fine-scale bubble-induced turbulence. I. Dynamics

We study the effect of bubble breakup and coalescence on fine-scale dynamics of bubbly turbulent flows using direct numerical simulations. We perform two different simulations of dilute bubbly flows of void fraction 0.5%: one with bubbles breaking up and coalescing and the other without these physical processes. The volume of the fluid method is used for simulating bubbles undergoing breakup and coalescence while the bubbles are treated as rigid spheres in the immersed boundary method simulation. The energy spectrum in both types of simulation, consistent with previous studies, exhibits a -3 slope. We follow a single infinitesimal fluid element as it evolves to understand velocity gradient dynamics using conditional mean trajectories. We note finite-time divergence when the fluid element evolves under the action of inertial and pressure dynamics. The inertial, pressure, and viscous velocity gradient dynamics, when considered individually, produce the same results for bubble-induced turbulence (BIT) as with the classical homogeneous isotropic turbulence (HIT). Yet when the overall velocity gradient dynamics is considered, BIT results in non-cyclic trajectories moving toward stable node and unstable saddle while classical HIT shows cyclic behavior in their trajectories that move toward the origin. Interestingly, both the volume of fluid and immersed boundary simulations produce similar results. Therefore, there are two main takeaways from this research. First, new velocity gradient models are needed for BIT as their velocity gradients behavior is entirely different from the HIT. Second, we can neglect the bubble topology, breakup, and coalescence while studying or modeling the fine-scale dynamics of BIT.

42 ENGINEERING↗
DOE OSTI2024

Simulated signatures of ignition

Ignition on the National Ignition Facility (NIF) provides a novel opportunity to evaluate past data to identify signatures of capsule failure mechanisms. We have used new simulations of high-yield implosions as well as some from past studies in order to identify unique signatures of different ignition failure mechanisms: jetting due to the presence of voids or defects, jetting due to the capsule fill tube, interfacial mixing due to instabilities or due to plasma transport, radiative cooling due to the presence of contaminant in the hot spot, long-wavelength drive asymmetry, and preheat. Many of these failure mechanisms exhibit unique trajectories that can be distinguished through variations in experimental observables such as neutron yield, down-scattered ratio (DSR), and burn width. Our simulations include capsules using both plastic and high-density carbon ablators and span all high-yield designs considered since the beginning of the National Ignition Campaign in 2011. We observe that the variability in trajectories through the space of neutron yield, DSR, and burn width varies little across capsule design yet are unique to the failure mechanism. The experimental trajectories are most consistent with simulated preheat and jetting due to voids and defects, which are the only failure mechanisms that are indistinguishable in our analysis. This suggests that improvements to capsule compression due to improved capsule quality or reduced preheat have played a primary role in enabling high yields on NIF. Furthermore, our analysis suggests that further improvements have the potential to increase yields further.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2026

Data-driven Mori–Zwanzig modeling of Lagrangian particle dynamics in turbulent flows

The dynamics of Lagrangian particles in turbulence play a crucial role in mixing, transport, and dispersion in complex flows. Their trajectories exhibit highly nontrivial statistical behavior, motivating the development of surrogate models that can reproduce these trajectories without incurring the high computational cost of direct numerical simulations of the full Eulerian field. This task is particularly challenging because reduced-order models typically lack access to the full set of interactions with the underlying turbulent field. Novel data-driven machine learning techniques can be powerful in capturing and reproducing complex statistics of the reduced-order/surrogate dynamics. In this work, we show how one can learn a surrogate dynamical system that is able to evolve a turbulent Lagrangian trajectory in a way that is point-wise accurate for short-time predictions (with respect to Kolmogorov time) and stable and statistically accurate at long times. This approach is based on the Mori–Zwanzig formalism, which prescribes a mathematical decomposition of the full dynamical system into resolved dynamics that depend on the current state and the past history of a reduced set of observables, and the unresolved orthogonal dynamics due to unresolved degrees of freedom of the initial state. We show how by training this reduced order model on a point-wise error metric on short time-prediction, we are able to correctly learn the dynamics of Lagrangian turbulence, such that also the long-time statistical behavior is stably recovered at test time. This opens up a range of applications, for example, for the control of active Lagrangian agents in turbulence.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2020

Analytical formula for pellet fuel source density in toroidal plasma configurations based on an areal deposition model

An analytical formula for the fuel source density η F (Ψ) over a magnetic flux surface Ψ following pellet injection is derived. During pellet motion the ablated and ionized fuel will be initially deposited nearby the pellet, prior to subsequent homogenization within the magnetic flux surfaces. Here in our research, it is assumed that the deposition area projected normal to the magnetic field is on the order of the cross-sectional area of the ionized ablation column whose axis is aligned with the magnetic field. Previous pellet deposition codes [1] employed a point source deposition approximation, which overpredicts the surface-averaged density, particularly when the obliquity between the pellet trajectory and the flux surface normal approaches 90 degrees. A key finding of this study is that as the obliquity approaches 90 degrees, grazing trajectory, the areal model predicts a well behaved η F and removes the unphysical divergence stemming from the point model. To illustrate the difference exhibited between areal and point models for near grazing trajectories, we considered vertical pellet injection into a CFETR-like tokamak with a negative triangularity plasma cross section using a pellet ablation/deposition module.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2022

3D ion gyro-orbit heat load predictions for NSTX-U

Abstract High power tokamaks operate with divertor heat loads capable of destroying the plasma facing components (PFCs). High fidelity heat load predictions are necessary to ascertain the PFC state for design and during operation. Typical heat flux calculations are 2D, time invariant, and assume that power flows directly along the magnetic field lines (the optical approximation). These assumptions neglect the complex 3D geometries employed to protect the PFCs, the time varying nature of the plasma and PFC thermal state, and the helical trajectories of ions with finite Larmor radii (the gyro-orbit approximation). An integrated software framework, the heat flux engineering analysis toolkit (HEAT), was developed to generate time varying optical heat loads applied to real engineering computer aided design (CAD) (Looby et al 2022 Fusion Sci. Technol. 78 10–27). Recently, an ion-gyro orbit module has been added to HEAT. This module calculates the helical trajectories of ions as they gyrate about the magnetic field lines using kinetic theory macro-particles to accelerate the calculation. First, the new gyro-orbit module will be presented. Next, a comparison to existing research is performed. Finally, an analysis of the gyro-orbit heat loads for NSTX-U is presented for diverted discharges using the engineering CAD models utilized for PFC fabrication. Including these gyro-orbit effects can enhance the PFC performance by ‘smearing’ out the magnetic shadows associated with the castellated fish-scaled geometry. Simultaneously, the helical trajectories can degrade performance when they load narrow regions on edges and corners with high heat fluxes. Analysis of the trade-offs between these competing effects is included, and regions for further investigation are identified.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2025

Towards modelling AR Sco: calibration – reproducing high-energy pulsar emission and testing convergence to Aristotelian electrodynamics

In recent years, kinetic simulations have been crucial to further our understanding of pulsar electrodynamics. Yet, due to the large-scale separation between the gyro-period and the stellar rotation period, resolving the particle gyration has been computationally unfeasible for realistic pulsar parameters. The main aim of this work is comparing our gyro-phase-resolved model with a gyro-centric pulsar model, where our model solves the general equations of motion with included radiation reaction using a higher order numerical solver with adaptive time-steps. Specifically, we aim to (i) reproduce a pulsar’s high-energy emission maps, namely one with 10 per cent of the surface B-field strength of Vela, and the spectra produced by an independent gyro-centric pulsar emission model; and (ii) test convergence of these results to the radiation-reaction limit of Aristotelian electrodynamics. (iii) Additionally, we identify the effect that a large $E_{\parallel }$-field has on the trajectories and radiation calculations. We find that we can reproduce the curvature radiation emission maps and spectra well, using 10 per cent field strengths of the Vela pulsar and injecting our particles at a higher altitude in the magnetosphere. Using sufficiently large $E_{\parallel }$-fields, our numeric results converge to the analytic radiation-reaction limit trajectories. Additionally, we illustrate the importance of accounting for the $\mathbf {E}\times \mathbf {B}$-drift in the particle trajectories and radiation calculations, validating the Harding and collaborators’ model approach. Lastly, we found that our model deals very well with the high-radiation-reaction and high-field regimes present in pulsars.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Probing two-path electron quantum interference in strong-field ionization with time-correlation filtering

We report attosecond dynamics in strong-field tunnel ionization are encoded in intricate holographic patterns in the photoelectron momentum distributions. These patterns show the interference between two or more superposed quantum electron trajectories, which are defined by their ionization times and subsequent evolution in the laser field. We determine the ionization time separation between interfering pairs of electron orbits by performing a differential Fourier analysis on the measured momentum spectrum. We identify electron holograms formed by trajectory pairs whose ionization times are separated by less than a single quarter cycle, between a quarter cycle and half cycle, between a half cycle and three fourths of a cycle, and a full cycle apart. We compare our experimental results to the predictions of the Coulomb quantum orbit strong-field approximation (CQSFA) with significant success. We also time-filter the CQSFA trajectory calculations to demonstrate the validity of the technique on spectra with known time correlations. As a general analysis technique, the filter can be applied to all energy- and angularly resolved data sets to recover time correlations between interfering electron pathways, providing an important tool to analyze any strong-field ionization spectra. Moreover, it is independent of theory and can be applied directly to experiments, without the need of a direct comparison with orbit-based theoretical methods.

74 ATOMIC AND MOLECULAR PHYSICS↗
DOE OSTI2024

Shearless effective barriers to chaotic transport induced by even twin islands in nontwist systems

For several decades now it has been known that systems with shearless invariant tori, nontwist Hamiltonian systems, possess barriers to chaotic transport. These barriers are resilient to breakage under perturbation and therefore regions where they occur are natural places to look for barriers to transport. Here we describe a kind of effective barrier that persists after the shearless torus is broken. Because phenomena are generic, for convenience we study the standard nontwist map (SNM), an area-preserving map that violates the twist condition locally in the phase space. The barrier occurs in nontwist systems when twin even period islands are present, which happens for a broad range of parameter values in the SNM. With a phase space composed of regular and irregular orbits, the movement of chaotic trajectories is hampered by the existence of shearless curves, total barriers, and a network of partial barriers formed by the stable and unstable manifolds of the hyperbolic points. Being a degenerate system, the SNM has twin islands and, consequently, twin hyperbolic points. We show that the structures formed by the manifolds intrinsically depend on period parity of the twin islands. For this even scenario the structure that we call a torus free barrier occurs because the manifolds of different hyperbolic points form an intricate chain atop a dipole configuration and the transport of chaotic trajectories through the chain becomes a rare event. This structure impacts the emergence of transport, the escape basin for chaotic trajectories, the transport mechanism, and the chaotic saddle. The case of odd periodic orbits is different: we find for this case the emergence of transport immediately after the breakup of the last invariant curve, and this leads to a scenario of higher transport, with intricate escape basin boundary and a chaotic saddle with nonuniformly distributed points.

classical mechanics↗
DOE OSTI2020

Modal analysis of the behavior of inertial particles in turbulence subjected to Stokes drag

The clustering of small heavy inertial particles subjected to Stokes drag in turbulence, which is the concern of present study, is known to be minimal at small and large Stokes number and substantial at St = $\textit{O}$(1). This nonmonotonic trend, which has been shown computationally and experimentally, is yet to be explained analytically. In this study, we obtain an analytical expression for the Lyapunov exponents that quantitatively predicts this trend. The sum of the exponents, which is the normalized rate of change of the signed volume of a small cloud of particles, is correctly predicted to be negative and positive at small and large Stokes numbers, respectively, asymptoting to $\textit{τQ}$ as $\textit{τ}$ → 0 and $τ^{–1/2}|Q|^{1/4}$ as $\textit{τ} → ∞$, where $\textit{τ}$ is the particle relaxation time and $\textit{Q(τ)}$ is the difference between the norm of the rotation- and strain-rate tensors computed along the particle trajectory, which remains negative at all $\textit{τ}$ in turbulent flows. Additionally, the trajectory crossing is predicted only in hyperbolic flows where Q < 0 for sufficiently inertial particles with a $\textit{τ}$ that scales with $|Q|^{–1/2}$. Following the onset of crossovers, a transition from clustering to dispersion is predicted correctly. We show these behaviors are not unique to three-dimensional isotropic turbulence and can be reproduced closely by a one-dimensional mono-harmonic flow, which appears as a fundamental canonical problem in the study of particle clustering. Analysis of this one-dimensional canonical flow shows that the rate of clustering, quantified as the product of the Lyapunov exponent and particle relaxation time, is bounded by –1/2, behaving with extreme nonlinearity in the hyperbolic flows and always remaining positive in the elliptic flows. Finally, this model problem also confirms that dispersion in a hyperbolic flow will occur only if particles' trajectory cross. These findings, which stem from our analysis, are corroborated by the direct numerical simulations.

42 ENGINEERING↗
DOE OSTI2022

Advances in Secure 5G Network for a Nationwide Drone Corridor

Recent research has validated the proposal to add a separate set of antennas for 5G coverage in the air, while the conventional set of antennas continues to provide coverage on the ground, for a nationwide drone corridor for 5G cellular drones. More importantly, this drone corridor can be made secure and reliable by adapting the drone trajectories to avoid interference and security attacks, and with advanced precoding and physical layer security. Energy efficiency can also be improved with low-resolution massive multiple-input multiple-output (MIMO) systems that utilize low resolution digital to analog converters. This paper describes additional research findings to further support the creation of this nationwide drone corridor. We design optimal drone trajectory within the drone corridor to improve safety for pedestrians and vehicles on the ground. We derive the optimum antenna uptilt angle to minimize outage probability for a given drone corridor. We also study the placement of intelligent reflector surfaces in an urban drone corridor in order to improve the multi-path scattering and hence the spatial multiplexing gains for serving drones. We calculate trajectories to maximize data rate in the presence of smart interference when drones are used as relays and each drone may be deployed in the paths of data flows from multiple BSs to multiple UEs. Next we demonstrate how the use of the additional set of antennas along with the 3GPP standard based subframe blanking method can minimize the interference from ground reflection of the radio frequency (RF) radiation from the downtilted antennas. The paper concludes with plans to continue with experimental studies to advance this work further.

99 GENERAL AND MISCELLANEOUS↗
DOE OSTI2026

“One Table to Rule Them All”: How a Single Table can Enable Extensive Insights, Analytics and Assessment on Human Mobility Data

While much research has been conducted in Human Mobility Science, most studies on the analytics/insights part generally focus on one of the following: processing and analytics on human stop-trip behavior, design of individual mobility metrics (often in silos), calculation and characterization of only a handful (typically 5-6) of human mobility metrics on geospatial-temporal human mobility data of interest. Although human mobility research offers a vast and diverse array of available metrics, most individual studies typically compute only a small subset of five or six metrics at a time when analyzing trajectory datasets of human mobility across different areas of interest. This paper is motivated by the critical need to repeatedly compute an extensive array of human mobility metrics across several trajectory datasets and perform individual metric-level benchmarking to establish a new, standardized Test and Evaluation (T&E) suite for the field of Human Mobility Science. We first present our findings on the minimal yet sufficient pre-processing required to reliably and efficiently compute a wide range of human mobility metrics. The key findings are specifically related to the proposed Composite Stop Locations table, which serves as a core pre-processing data layer. Subsequently, we present a case study demonstrating how the Composite Stop Locations table facilitates computation of at least 14 distinct human mobility metrics (unlike 5-6 different set of metrics used for studies in the literature) using the popular and open-source OpenPFLOW dataset. Finally, we have also presented an example of our benchmarking methodology to evaluate the quality and performance of the trajectory dataset of interest, assessed across multiple human mobility metrics.

De, Debraj [ORNL] (ORCID:0000000233630020)↗