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At least 361 records · Page 20

The use of ERTS-1 to more fully utilize and apply marine station data to the study and productivity along the eastern shelf waters of the United States

The author has identified the following significant results. Sea truth data were obtained during two ERTS overpasses in waters near the entrance of the Chesapeake Bay. Correlations were made between total phytoplankton and chlorophyll values in these waters to radiance detected by ERTS in an effort to map areas of similar productivity levels. Band 4 radiance had the highest correlation to all parameters with bands 5 and 6 showing decreasing correlations in each case. The radiance values were apparently influenced by one or more factors, most likely including the sediment content of the water. Data have shown that ERTS MSS is not suitable for monitoring chlorophyll in near-shore waters where sediment loads are high. It is suggested that in more seaward or pelagic locations, that ERTS MSS would be more efficient in monitoring surface chlorophyll values and establishing direct relationships to phytoplankton concentrations.

Marshall, H. G.↗

Atmospheric correction of AVIRIS data in ocean waters

Hyperspectral data offers unique capabilities for characterizing the ocean environment. The spectral characterization of the composition of ocean waters can be organized into biological and terrigenous components. Biological photosynthetic pigments in ocean waters have unique spectral ocean color signatures which can be associated with different biological species. Additionally, suspended sediment has different scattering coefficients which result in ocean color signatures. Measuring the spatial distributions of these components in the maritime environments provides important tools for understanding and monitoring the ocean environment. These tools have significant applications in pollution, carbon cycle, current and water mass detection, location of fronts and eddies, sewage discharge and fate etc. Ocean color was used from satellite for describing the spatial variability of chlorophyll, water clarity (K(sub 490)), suspended sediment concentration, currents etc. Additionally, with improved atmospheric correction methods, ocean color results produced global products of spectral water leaving radiance (L(sub W)). Ocean color results clearly indicated strong applications for characterizing the spatial and temporal variability of bio-optical oceanography. These studies were largely the results of advanced atmospheric correction techniques applied to multispectral imagery. The atmosphere contributes approximately 80 percent - 90 percent of the satellite received radiance in the blue-green portion of the spectrum. In deep ocean waters, maximum transmission of visible radiance is achieved at 490nm. Conversely, nearly all of the light is absorbed by the water at wavelengths greater than about 650nm and thus appears black. These spectral ocean properties are exploited by algorithms developed for the atmospheric correction used in satellite ocean color processing. The objective was to apply atmospheric correction techniques that were used for procesing satellite Coastal Zone Color Scanner (CZCS) data to AVIRIS data. Quantitative measures of L(sub W) from AVIRIS are compared with ship ground truth data and input into bio-optical models.

Terrie, Gregory↗

An Operational Overview of the EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) Northeast Pacific Field Deployment

The goal of the EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) field campaign is to develop a predictive understanding of the export, fate, and carbon cycle impacts of global ocean net primary production. To accomplish this goal, observations of export flux pathways, plankton community composition, food web processes, and optical, physical, and biogeochemical (BGC) properties are needed over a range of ecosystem states. Here we introduce the first EXPORTS field deployment to Ocean Station Papa in the Northeast Pacific Ocean during summer of 2018, providing context for other papers in this special collection. The experiment was conducted with two ships: a Process Ship, focused on ecological rates, BGC fluxes, temporal changes in food web, and BGC and optical properties, that followed an instrumented Lagrangian float; and a Survey Ship that sampled BGC and optical properties in spatial patterns around the Process Ship. An array of autonomous underwater assets provided measurements over a range of spatial and temporal scales, and partnering programs and remote sensing observations provided additional observational context. The oceanographic setting was typical of late-summer conditions at Ocean Station Papa: a shallow mixed layer, strong vertical and weak horizontal gradients in hydrographic properties, sluggish sub-inertial currents, elevated macronutrient concentrations and low phytoplankton abundances. Although nutrient concentrations were consistent with previous observations, mixed layer chlorophyll was lower than typically observed, resulting in a deeper euphotic zone. Analyses of surface layer temperature and salinity found three distinct surface water types, allowing for diagnosis of whether observed changes were spatial or temporal.The 2018 EXPORTS field deployment is among the most comprehensive biological pump studies ever conducted. A second deployment to the North Atlantic Ocean occurred in spring 2021, which will be followed by focused work on data synthesis and modeling using the entire EXPORTS data set.

Biological pump↗

Determination of the major groups of phytoplankton pigments from the absorption spectra of total particulate matter

The contributions of detrital particles and phytoplankton to total light absorption are retrieved by nonlinear regression on the absorption spectra of total particles from various oceanic regions. The model used explains more than 96% of the variance in the observed particle absorption spectra. The resulting absorption spectra of phytoplankton are then decomposed into several Gaussian bands reflecting absorption by phytoplankton pigments. Such a decomposition, combined with high-performance liquid chromatography data on phytoplankton pigment concentrations, allows the computation of specific absorption coefficients for chlorophylls a, b, and c and carotenoids. The spectral values of these in vivo absorption coefficients are then discussed, considering the effects of secondary pigments which were not measured quantitatively. We show that these coefficients can be used to reconstruct the absorption spectra of phytoplankton at various locations and depths. Discrepancies that do occur at some stations are explained in terms of particle size effect. These coefficients can be used to determine the concentrations of phytoplankton pigments in the water, given the absorption spectrum of total particles.

Hoepffner, Nicolas↗

Reflectance spectroscopy of fresh whole leaves for the estimation of chemical concentration

Remotely sensed plant-canopy data in the visible and near-IR ranges are used to establish relations between the canopy reflectance and the chemical content of the leaves. The mathematical relation is generated by means of stepwise regression based on the derivative reflectance at certain wavelengths. Fourier filtering and sample control are used to minimize instrument noise and spectral overlap respectively, and absorption features are noted that correspond to sugar and protein. The coefficients of determination between estimated and measured concentrations are at least 0.82 for such substances as starch and chlorophyll. It is recommended in the analysis of remotly sensed canopy data that the chemicals with strong spectral overlaps with the chemical of interest be accounted for in order to estimate foliar chemical concentrations accurately.

Curran, Paul J.↗

Dynamics of the transition zone in coastal zone color scanner-sensed ocean color in the North Pacific during oceanographic spring

A transition zone in phytoplankton concentration running across the North Pacific basin at 30 deg to 40 deg north latitude corresponds to a basin-wide front in surface chlorophyll observed in a composite of coastal zone color scanner (CZCS) images for May, June, and July 1979-1986. This transition zone with low chlorophyll to the south and higher chlorophyll to the north can be simulated by a simple model of the concentration of phytoplankton, zooplankton, and dissolved nutrient (nitrate) in the surface mixed layer of the ocean applied to the North Pacific basin for the climatological conditions during oceanographic springtime (May, June, and July). The model is initialized with a 1 deg x 1 deg gridded estimate of wintertime (February, March, and April) mixed layer nitrate concentrations calculated from an extensive nutrient database and a similarly gridded mixed layer depth data set. Comparison of model predictions with CZCS data provides a means of evaluating the dynamics of the transition zone. We conclude that in the North Pacific, away from major boundary currents and coastal upwelling zones, wintertime vertical mixing determines the total nutrient available to the plankton ecosystem in the spring. The transition zone seen in basin-scale CZCS images is a reflection of the geographic variation in the wintertime mixed layer depth and the nitracline, leading to a latitudinal gradient in phytoplankton chlorophyll.

Glover, David M.↗

Phytoplankton pigment concentrations in the Middle Atlantic Bight - Comparison of ship determinations and CZCS estimates

The processing algorithms used for relating the apparent color of the ocean observed with the Coastal-Zone Color Scanner on Nimbus-7 to the concentration of phytoplankton pigments (principally the pigment responsible for photosynthesis, chlorophyll-a) are developed and discussed in detail. These algorithms are applied to the shelf and slope waters of the Middle Atlantic Bight and also to Sargasso Sea waters. In all, four images are examined, and the resulting pigment concentrations are compared to continuous measurements made along ship tracks. The results suggest that over the 0.08-1.5 mg/cu m range, the error in the retrieved pigment concentration is of the order of 30-40% for a variety of atmospheric turbidities. In three direct comparisons between ship-measured and satellite-retrieved values of the water-leaving radiance, the atmospheric correction algorithm retrieved the water-leaving radiance with an average error of about 10%. This atmospheric correction algorithm does not require any surface measurements for its application.

Gordon, H. R.↗

A Blind Convolutional Deep Autoencoder for Spectral Unmixing of Hyperspectral Images Over Waterbodies

Harmful algal blooms have dangerous repercussions for biodiversity, the ecosystem, and public health. Automatic identification based on remote sensing hyperspectral image analysis provides a valuable mechanism for extracting the spectral signatures of harmful algal blooms and their respective percentage in a region of interest. This paper proposes a new model called a non-symmetrical autoencoder for spectral unmixing to perform endmember extraction and fractional abundance estimation. The model is assessed in benchmark datasets, such as Jasper Ridge and Samson. Additionally, a case study of the HSI2 image acquired by NASA over Lake Erie in 2017 is conducted for extracting optical water types. The results using the proposed model for the benchmark datasets improve unmixing performance, as indicated by the spectral angle distance compared to five baseline algorithms. Improved results were obtained for various metrics. In the Samson dataset, the proposed model outperformed other methods for water (0.060) and soil (0.025) endmember extraction. Moreover, the proposed method exhibited superior performance in terms of mean spectral angle distance compared to the other five baseline algorithms. The non-symmetrical autoencoder for the spectral unmixing approach achieved better results for abundance map estimation, with a root mean square error of 0.091 for water and 0.187 for soil, compared to the ground truth. For the Jasper Ridge dataset, the non-symmetrical autoencoder for the spectral unmixing model excelled in the tree (0.039) and road (0.068) endmember extraction and also demonstrated improved results for water abundance maps (0.1121). The proposed model can identify the presence of chlorophyll-a in waterbodies. Chlorophyll-a is an essential indicator of the presence of the different concentrations of macrophytes and cyanobacteria. The non-symmetrical autoencoder for spectral unmixing achieves a value of 0.307 for the spectral angle distance metric compared to a reference ground truth spectral signature of chlorophyll-a. The source code for the proposed model, as implemented in this manuscript, can be found at https://github.com/EstefaniaAlfaro/autoencoder_owt_spectral.git.

hyperspectral imaging↗

Remote sensing for water quality and biological measurements in coastal waters

Recent remote sensing experiments in the United States' coastal waters indicate that certain biological and water quality parameters have distinctive spectral characteristics. Data outputs from remote sensors, to date, include: (1) high resolution measurements to determine concentrations and distributions of total suspended particulates, temperature, salinity, chlorophyll a, and phytoplankton color group associations from airborne and/or satellite platforms, and (2) low resolution measurements of total suspended solids, temperature, ocean color, and possibly chlorophyll from satellite platforms. A summary of platforms, sensors and parameters measured is given. Remote sensing, especially when combined with conventional oceanographic research methods, can be useful in such high priority research areas as estuarine and continental shelf sediment transport dynamics, transport and fate of marine pollutants, marine phytoplankton dynamics, and ocean fronts.

Johnson, R. W.↗

Methyl bromide: ocean sources, ocean sinks, and climate sensitivity

The oceans play an important role in the geochemical cycle of methyl bromide (CH3Br), the major carrier of O3-destroying bromine to the stratosphere. The quantity of CH3Br produced annually in seawater is comparable to the amount entering the atmosphere each year from natural and anthropogenic sources. The production mechanism is unknown but may be biological. Most of this CH3Br is consumed in situ by hydrolysis or reaction with chloride. The size of the fraction which escapes to the atmosphere is poorly constrained; measurements in seawater and the atmosphere have been used to justify both a large oceanic CH3Br flux to the atmosphere and a small net ocean sink. Since the consumption reactions are extremely temperature-sensitive, small temperature variations have large effects on the CH3Br concentration in seawater, and therefore on the exchange between the atmosphere and the ocean. The net CH3Br flux is also sensitive to variations in the rate of CH3Br production. We have quantified these effects using a simple steady state mass balance model. When CH3Br production rates are linearly scaled with seawater chlorophyll content, this model reproduces the latitudinal variations in marine CH3Br concentrations observed in the east Pacific Ocean by Singh et al. [1983] and by Lobert et al. [1995]. The apparent correlation of CH3Br production with primary production explains the discrepancies between the two observational studies, strengthening recent suggestions that the open ocean is a small net sink for atmospheric CH3Br, rather than a large net source. The Southern Ocean is implicated as a possible large net source of CH3Br to the atmosphere. Since our model indicates that both the direction and magnitude of CH3Br exchange between the atmosphere and ocean are extremely sensitive to temperature and marine productivity, and since the rate of CH3Br production in the oceans is comparable to the rate at which this compound is introduced to the atmosphere, even small perturbations to temperature or productivity can modify atmospheric CH3Br. Therefore atmospheric CH3Br should be sensitive to climate conditions. Our modeling indicates that climate-induced CH3Br variations can be larger than those resulting from small (+/- 25%) changes in the anthropogenic source, assuming that this source comprises less than half of all inputs. Future measurements of marine CH3Br, temperature, and primary production should be combined with such models to determine the relationship between marine biological activity and CH3Br production. Better understanding of the biological term is especially important to assess the importance of non-anthropogenic sources to stratospheric ozone loss and the sensitivity of these sources to global climate change.

NASA Discipline Exobiology↗

Phytochrome-mediated germination and early development in spores of Dryopteris filix-mas L.: phase-specific and non phase-specific inhibition by staurosporine

The alkaloid staurosporine, currently known as the most potent inhibitor of protein kinase C, PKC, was tested for its ability to inhibit phytochrome-mediated spore germination in Dryopteris filix-mas L., evaluated by the induction of chlorophyll synthesis. Approximately half-maximal inhibition was obtained at a concentration of 10(-5) M. This effect of staurosporine was phase-specific and was found during the same period in which the presence of extracellular calcium is necessary for realization of the light signal. Furthermore, the ability of staurosporine to prevent progression of a germinated spore into early gametophyte development, evaluated by the accumulation of chlorophyll, was examined. Again, staurosporine (10(-5) M) significantly diminished chlorophyll accumulation, determined quantitatively in vivo by single-cell measurements, in a non-phase specific way. The fact that the phase-specific inhibitory effect of staurosporine in preventing germination was coincident with the phase-specific requirement of Ca2+ suggests that both Ca2+ and staurosporine affect the same step in the signal-transduction chain. A phosphorylation event catalysed by PKC or any Ca2+ -dependent protein kinase is proposed as the target of staurosporine and Ca2+.

Non-NASA Center↗

Ocean Primary Production Estimates from Terra MODIS and Their Dependency on Satellite Chlorophyll Alpha Algorithms

Simplistic models relating global satellite ocean color, temperature, and light to ocean net primary production (ONPP) are sensitive to the accuracy and limitations of the satellite estimate of chlorophyll and other input fields, as well as the primary productivity model. The standard MODIS ONPP product uses the new semi-analytic chlorophyll algorithm as its input for two ONPP indexes. The three primary MODIS chlorophyll Q estimates from MODIS, as well as the SeaWiFS 4 chlorophyll product, were used to assess global and regional performance in estimating ONPP for the full mission, but concentrating on 2001. The two standard ONPP algorithms were examined with 8-day and 39 kilometer resolution to quantify chlorophyll algorithm dependency of ONPP. Ancillary data (MLD from FNMOC, MODIS SSTD1, and PAR from the GSFC DAO) were identical. The standard MODIS ONPP estimates for annual production in 2001 was 59 and 58 GT C for the two ONPP algorithms. Differences in ONPP using alternate chlorophylls were on the order of 10% for global annual ONPP, but ranged to 100% regionally. On all scales the differences in ONPP were smaller between MODIS and SeaWiFS than between ONPP models, or among chlorophyll algorithms within MODIS. Largest regional ONPP differences were found in the Southern Ocean (SO). In the SO, application of the semi-analytic chlorophyll resulted in not only a magnitude difference in ONPP (2x), but also a temporal shift in the time of maximum production compared to empirical algorithms when summed over standard oceanic areas. The resulting increase in global ONPP (6-7 GT) is supported by better performance of the semi-analytic chlorophyll in the SO and other high chlorophyll regions. The differences are significant in terms of understanding regional differences and dynamics of ocean carbon transformations.

Essias, Wayne E.↗

The remote sensing of ocean primary productivity - Use of a new data compilation to test satellite algorithms

Global pigment and primary productivity algorithms based on a new data compilation of over 12,000 stations occupied mostly in the Northern Hemisphere, from the late 1950s to 1988, were tested. The results showed high variability of the fraction of total pigment contributed by chlorophyll, which is required for subsequent predictions of primary productivity. Two models, which predict pigment concentration normalized to an attenuation length of euphotic depth, were checked against 2,800 vertical profiles of pigments. Phaeopigments consistently showed maxima at about one optical depth below the chlorophyll maxima. CZCS data coincident with the sea truth data were also checked. A regression of satellite-derived pigment vs ship-derived pigment had a coefficient of determination. The satellite underestimated the true pigment concentration in mesotrophic and oligotrophic waters and overestimated the pigment concentration in eutrophic waters. The error in the satellite estimate showed no trends with time between 1978 and 1986.

Balch, William↗

The effects of the pollutant, sodium cyanide, on the morphology and physiology of oedogonium cardiacum

OEDOGONIUM cardiacum exposed to varying concentrations of sodium cyanide for 15 day periods exhibited both morphological and physiological alterations. Organisms were exposed to the pollutant in concentrations of 1, 10, 25, 50, and 100 parts per million. Exposure period for organisms in each concentration was 15 days. As the concentration of the pollutant increased fragmentation also increased. Exposure also caused organisms to lose chlorophyll. The third morphological alteration was the incidence of rupture. Physiological effects altered by exposure included: reduced oxygen evolution, retardation of starch production and death. Death occurs when organisms are exposed to high concentrations over the total 15 day period.

Sparks, E.↗

Quantitative analysis of aircraft multispectral-scanner data and mapping of water-quality parameters in the James River in Virginia

Statistical analysis techniques were applied to develop quantitative relationships between in situ river measurements and the remotely sensed data that were obtained over the James River in Virginia on 28 May 1974. The remotely sensed data were collected with a multispectral scanner and with photographs taken from an aircraft platform. Concentration differences among water quality parameters such as suspended sediment, chlorophyll a, and nutrients indicated significant spectral variations. Calibrated equations from the multiple regression analysis were used to develop maps that indicated the quantitative distributions of water quality parameters and the dispersion characteristics of a pollutant plume entering the turbid river system. Results from further analyses that use only three preselected multispectral scanner bands of data indicated that regression coefficients and standard errors of estimate were not appreciably degraded compared with results from the 10-band analysis.

Johnson, R. W.↗

Biological and physical oceanographic observations pertaining to the trawl fishery in a region of persistent coastal upwelling

An upwelling episode in the Point Sal region of the central California coast is examined by using data obtained by a data buoy. The episodes was interrupted by the abrupt abatement of the strong wind which promotes coastal upwelling. The mean hourly upwelling index is calculated to be higher than the 20 year mean monthly value. During 3 days of light wind commercial bottom trawl operations were possible. Shipboard estimates of chlorophyll content in surface waters during trawling show the high concentrations that are indicative of a rich biomass of phytoplankton, a result of the upwelling episode. Satellite imagery shows the extent of the upwelling water to be of the order of 100 km offshore; the result of many upwelling episodes. Shipboard echo sounder data show the presence of various delmersal species and of zooplakton; the latter graze on the phytoplankton in the upper euphotic layers. The fish catch data are recorded according to species for 2 days of trawling, and the catch per trawl hour is recorded.

Howe, J. T.↗

Assessment of Oceanographic Conditions during the North Atlantic EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) Field Campaign

This manuscript presents an overview of NASA’s EXport Processes in the Ocean from Remote Sensing 2021 Field Campaign in the North Atlantic (EXPORTS NA) and provides quantitative and dynamical descriptions of the physical processes modulating water transformations during the study. A major programmatic goal was to conduct the sampling in a Lagrangian mode so that ocean ecological and biogeochemical changes can be observed independent from physical advective processes. To accomplish this goal, EXPORTS NA conducted a multi-ship, multi-asset field sampling program within a retentive, anticyclonic mode water eddy. Beneath depths of ∼100 m, Lagrangian sampling assets remained within the eddy core waters (ECWs) throughout the experiment, demonstrating that the ECWs within the mode water eddy were retentive. However, strong westerly winds from four storm events deepened the mixed layer (ML) of the surface core waters (SCWs) above the eddy’s mode water core by 25-40 m and exchanged some of the SCWs with surface waters outside of the eddy via Ekman transport. Estimates of flushing times ranged from 5-8 days, with surface exchange fractions ranging from 20-75% and were consistent with particle tracking advected by combined geostrophic and Ekman velocities. The relative contributions of horizontal and vertical advection on changes in ECW tracers depended on the horizontal and vertical gradients of that tracer. For example, horizontal advection played a large role in ECW salinity fluxes, while vertical entrainment played a larger role in the fluxes of nutrients into SCW ML. Each storm injected nutrients and low oxygen waters into the ML, after which the surface ocean ecosystem responded by reducing nutrient concentrations and increasing %O2 saturation levels. Overall, ECW values of chlorophyll and POC were the largest at the onset of the field program and decreased throughout the campaign. The analysis presented provides a physical oceanographic context for the many measurements made during the EXPORTS NA field campaign while illustrating the many challenges of conducting a production-flux experiment, even in a Lagrangian frame, and the inherent uncertainties of interpreting biological carbon pump observations that were collected in a Eulerian frame of reference.

oceanography↗

Plumes and Blooms: Observations, Analysis and Modeling for SIMBIOS

The goal of the Plumes and Blooms (PnB) project is to develop, validate and apply to imagery state-of-theart ocean color algorithms for quantifying sediment plumes and phytoplankton blooms for the Case I1 environment of the Santa Barbara Channel. We conduct monthly to twice-monthly transect observations across the Santa Barbara Channel to develop an algorithm development and product validation data set. The PnB field program started in the summer of 1996. At each of the 7 PnB stations, a complete verification bio-geo-optical data set is collected. Included are redundant measures of apparent optical properties (remote sensing reflectance and diffuse attenuation spectra), as well as in situ profiles of spectral absorption, beam attenuation and backscattering coefficients. Water samples are analyzed for component in vivo absorption spectra, fluorometric chlorophyll, phytoplankton pigment (by the SDSU CHORS laboratory), and inorganic nutrient concentrations (Table 1). A primary goal is to use the PnB field data set to objectively tune semi-analytical models of ocean color for this site and apply them using available satellite imagery (SeaWiFS and MODIS). In support of this goal, we have also been addressing SeaWiFS ocean color and AVHRR SST imagery (Otero and Siegel, 2003). We also are using the PnB data set to address time/space variability of water masses in the Santa Barbara Channel and its relationship to the 1997/1998 El Niiio. However, the comparison between PnB field observations and satellite estimates of primary products has been disappointing. We find that field estimates of water-leaving radiance, LwN(h), correspond poorly to satellite estimates for both SeaWiFS and MODIS local area coverage imagery. We believe this is due to poor atmospheric correction due to complex mixtures of aerosol types found in these near-coastal regions. Last, we remain active in outreach activities.

Siegel, D. A.↗