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DOE OSTI2021

Simulations of axion minihalos

The axion, motivated as a solution to the strong CP problem, is also a viable dark matter candidate. The axion field takes random values in causally disconnected regions if the symmetry breaking that establishes the particle occurs after inflation, leading to white-noise density fluctuations at low wave numbers and forming dense minihalos with sub-planetary masses subsequently. There have been two recent proposals that appear capable of testing this scenario, namely using pulsar timing arrays and studying cosmological microlensing caustics. Motivated by these proposals, we use N-body simulations to study the formation of substructures from white-noise density fluctuations. The density profiles of our relaxed axion minihalos can be described by the Navarro–Frenk–White profile, and the minihalos’ concentration number agrees well with a simple, physically-motivated model. We develop a semi-analytic formula to fit the mass function from our simulation, which agrees broadly at different redshifts and only differs at factor of two level from classic halo mass functions. This analytic mass function allows us to consider uncertainties in the post-inflation axion scenario, as well as extrapolate our high-redshift simulations results to the present. Our work estimates the present-day abundance of axion substructures, as is necessary for predicting their effect on cosmological microlensing caustics and pulsar timing. Our calculations suggest that if pulsar timing and microlensing probes can reach recent sensitivity forecasts, they may be sensitive to the post-inflation axion dark matter scenario, even when accounting for uncertainties pertaining to axion strings. For pulsar timing, the most significant caveat is whether axion minihalos are disrupted by stars, which our estimates show is mildly important at the most relevant masses. In conclusion, as our gravitational simulations are scale invariant, the results can be extended to models where the dark matter is comprised of other axion-like particles and even clusters of primordial black holes.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2021

Implementation of Disruptive Designs for Gas Turbine Components Utilizing Additive Manufacturing

Electron beam melting (EBM) is an additive manufacturing process used to print metallic components with complex geometries for aerospace applications. A preheating characteristic enables this technology to avoid large accumulation of residual stress during printing. However, cracking mechanisms particularly in Ni-based superalloys are associated with not only residual stress but also with microstructure (i.e., solidification morphology, transient evolution of γ'). Siemens is committed to AM technology for gas turbine applications. The ability to novel predictive designs of turbine blades would reduce process development time and allow acquisition of key microstructure and performance data early in a design campaign. Siemens initiated a project to establish the design rules for the fabrication of non-printable Nibased superalloys. This phase 1 program demonstrates the feasibility for virtual fabrication of the actual blade geometries through EBM process.

42 ENGINEERING↗

DOE OSTI2021

Microscopic ejecta measurements from hypervelocity impacts on aluminum and powdered regolith targets

Meteoroids and space debris pose a two-fold threat to spacecraft due to the risk of both mechanical damage from the impact and electrical damage from the impact-generated plasma, which produces electromagnetic emissions. Analysis of impact products, however, has the potential to provide useful information about planetary rings and small solar system bodies, such as asteroids and comets. Understanding the plasma dynamics and radiation mechanism is essential to addressing the impact threat and extracting science data from impacts. Charge attachment to condensed-phase debris may lead to a dusty plasma under certain conditions, so interpreting hypervelocity impacts requires knowledge of both the nature of the plasma and of the ejecta. We address the latter with measurements of the microscopic ejecta distribution produced by light gas gun impacts on solid aluminum and powdered regolith simulant targets. We examine both the size and shape of the ejecta using thin-film witness plates and find that the size distributions of microscopic ejecta follow power laws. Observations from the powdered regolith simulant match well with disruption experiments of solid basalt, while measurements from the aluminum impacts diverge from extrapolations based on studies of macroscopic debris. Analysis of the ejecta shape shows a transition from smooth to irregularly shaped ejecta at the material grain size, and the shape of debris may provide insight on the phase of the ejected material. Finally, based on our results, we predict a significant number of secondary impacts on plasma sensors due to ejecta, even at considerable distance from the target, supporting the hypothesis that charged dust affects plasma measurements in the ejecta curtain.

42 ENGINEERING↗

DOE OSTI2023

AToM: Advanced Tokamak Modeling Environment

Stability constraints play an important role in integrated modeling. The global plasma stability and macro-instabilities such as internal kink modes, neoclassical tearing modes, and edge localized perturbations limit the plasma performance and can result in large-scale transient events and plasma disruptions. These macro-instabilities can be also beneficial to the plasma performance. For example, the peeling models often lead to the edge localized modes (ELMs). However, the formation of stationary edge harmonic oscillations (EHOs) due to nonlinear interaction of peeling modes can result in a transition to the Quiescent H-mode (QH-mode) without ELMs. The profiles predicted with transport models need to be refined using the MHD stability constraints. This is important especially for transient and nonlinear stages of discharges such as ramp-up access to hybrid and steady state operation, and L- to H-mode transition as well as transition to the QH-mode. Several stability and MHD codes are already included in the OMFIT framework. These codes include BALOO, ELITE, GATO, M3DC1, MARS, and NIMROD. However, the verifications of stability constraints are currently mostly excluded from transport modeling workflows. The only exception is the EPED module which includes the ELITE predictions to limit the pedestal height. Here, we improved the OMFIT workflow to include stability calculations. Including the stability conditions to the integrated modeling workflow improved the robustness of the predictive modeling discharges. Being implemented in the workflow, the stability conditions can be also used for the stability analysis of experimental data. This improved the physics understanding of various discharge scenarios and can be used in experiment planning.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

NASA NTRS2026

LAI Assimilation Schedules to Constrain Uncertain Cultivars and Soils in CERES-Maize

In anticipation of large-domain crop model applications where precise local configuration and calibration is not possible, we describe benefits and potential drawbacks of employing a crop pest module to achieve leaf area index (LAI) assimilation into a high performing CERES-Maize crop model configuration at a field experiment site in Perry, Iowa. Simulation experiments explore the use of MODIS satellite-derived LAI to constrain and adjust LAI to counter imprecise cultivar and soil configurations often occurring in the absence of high-quality local information. Simulations using single-day, window, and continuous LAI replacement across 5 cultivars and 2 soil calibration approaches for nine corn rotation years from 2004 to 2020 led to different yield outcomes and reverberations throughout the field environment. Evaluating variance and mean bias, results indicate minimal interventions in early vegetative and grain-filling stages were more beneficial than use of continuous LAI adjustments, as they minimized disruptions to the internal resource balances governing plant stresses and grain production. LAI adjustment was particularly helpful in constraining growth related to uncertain thermal unit requirements and leaf tip appearance rates (P1 and PHINT cultivar parameters, respectively). Findings underscore the need to assimilate additional state variables to ensure internal biophysical coherence. This approach shows promise for applications spanning wider domains with prediction time pressure where detailed configuration, more complex assimilation methods, or recalibration of crop model parameters may not be practical.

Phenology↗

DOE OSTI2021

The pp → W(→ lν) + γ process at next-to-next-to-leading order

We present details of the calculation of the pp → W(→ lν)γ process at next-to-next-to-leading order in QCD, calculated using the jettiness slicing method. The calculation is based entirely on analytic amplitudes. Because of the radiation zero, the NLO QCD contribution from the gq channel is as important as the contribution from the Born $ q\overline{q} $ process, disrupting the normal counting of leading and sub-leading contributions. We also assess the importance of electroweak (EW) corrections, including the EW corrections to both the six-parton channel 0 →$ \overline{u} d\nu {e}^{+}\gamma g $ and the five-parton channel 0 →$ \overline{u} d\nu {e}^{+}\gamma $. Previous experimental results have been shown to agree with theoretical predictions, taking into account the large experimental errors. With the advent of run II data from the LHC, the statistical errors on the data will decrease, and will be competitive with the error on theoretical predictions for the first time. We present numerical results for $ \sqrt{s} $ = 7 and 13 TeV. Analytic results for the one-loop six-parton QCD amplitude and the tree-level seven-parton QCD amplitude are presented in appendices.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2023

Drug discovery efforts at George Mason University

With over 39,000 students, and research expenditures in excess of $200 million, George Mason University (GMU) is the largest R1 (Carnegie Classification of very high research activity) university in Virginia. Mason scientists have been involved in the discovery and development of novel diagnostics and therapeutics in areas as diverse as infectious diseases and cancer. Below are highlights of the efforts being led by Mason researchers in the drug discovery arena. To enable targeted cellular delivery, and non-biomedical applications, Veneziano and colleagues have developed a synthesis strategy that enables the design of self-assembling DNA nanoparticles (DNA origami) with prescribed shape and size in the 10 to 100 nm range. The nanoparticles can be loaded with molecules of interest such as drugs, proteins and peptides, and are a promising new addition to the drug delivery platforms currently in use. The investigators also recently used the DNA origami nanoparticles to fine tune the spatial presentation of immunogens to study the impact on B cell activation. These studies are an important step towards the rational design of vaccines for a variety of infectious agents. To elucidate the parameters for optimizing the delivery efficiency of lipid nanoparticles (LNPs), Buschmann, Paige and colleagues have devised methods for predicting and experimentally validating the pKa of LNPs based on the structure of the ionizable lipids used to formulate the LNPs. These studies may pave the way for the development of new LNP delivery vehicles that have reduced systemic distribution and improved endosomal release of their cargo post administration. To better understand protein-protein interactions and identify potential drug targets that disrupt such interactions, Luchini and colleagues have developed a methodology that identifies contact points between proteins using small molecule dyes. The dye molecules noncovalently bind to the accessible surfaces of a protein complex with very high affinity, but are excluded from contact regions. When the complex is denatured and digested with trypsin, the exposed regions covered by the dye do not get cleaved by the enzyme, whereas the contact points are digested. The resulting fragments can then be identified using mass spectrometry. The data generated can serve as the basis for designing small molecules and peptides that can disrupt the formation of protein complexes involved in disease processes. For example, using peptides based on the interleukin 1 receptor accessory protein (IL-1RAcP), Luchini, Liotta, Paige and colleagues disrupted the formation of IL-1/IL-R/IL-1RAcP complex and demonstrated that the inhibition of complex formation reduced the inflammatory response to IL-1B. Working on the discovery of novel antimicrobial agents, Bishop, van Hoek and colleagues have discovered a number of antimicrobial peptides from reptiles and other species. DRGN-1, is a synthetic peptide based on a histone H1-derived peptide that they had identified from Komodo Dragon plasma. DRGN-1 was shown to disrupt bacterial biofilms and promote wound healing in an animal model. The peptide, along with others, is being developed and tested in preclinical studies. Other research by van Hoek and colleagues focuses on in silico antimicrobial peptide discovery, screening of small molecules for antibacterial properties, as well as assessment of diffusible signal factors (DFS) as future therapeutics. The above examples provide insight into the cutting-edge studies undertaken by GMU scientists to develop novel methodologies and platform technologies important to drug discovery.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Transition from ITG to MTM linear instabilities near pedestals of high density plasmas

Here, investigation of linear gyrokinetic ion-scale modes ( k θ ρ s = 0.3) finds that a transition from ion temperature gradient to microtearing mode (MTM) dominance occurs as the density is increased near the pedestal region of a parameterized DIII-D sized tokamak. H-modes profile densities, temperatures, and equilibria are parameterized utilizing the OMFIT PRO_create module. With these profiles, linear gyrokinetic ion-scale instabilities are predicted with CGYRO. This transition (nMTM) has a weak dependence on radial location in the region near the top of the pedestal ( ρ = 0.7 – 0.9), which allows simulating single radii to examine the approximate scaling of nMTM with global parameters. The critical nMTM is found to scale with plasma current. Additionally, increasing the minor radius by decreasing the aspect ratio and increasing the major radius are found to reduce nMTM. However, any relationship between nMTM and density limit physics remains unclear as nMTM increases relative to the Greenwald density with larger minor radius and with larger magnetic field, suggesting that the transport due to MTM may be less important for a reactor. Additionally, nMTM is sensitive to the pedestal temperature, the local electron and ion gradients, the ratio of ion to electron temperature T i / T e, and the current profile. MTMs are predicted to be the dominant instability in the core at similar Greenwald fractions for DIII-D, NSTX, and NSTX-U H-mode experiments, supporting the results of the parameterized study. Additionally, MTMs continue to be the dominant linear instability in a DIII-D L-mode after an H–L transition as the plasma approaches a density limit disruption despite the large change in plasma profiles.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

NASA NTRS1992

Instabilities in astrophysical jets. II - Numerical simulations of slab jets

Numerical simulations of an unstable supersonic slab-symmetric jet are described. The instabilities within the jet are characterized by growing internal body waves and their coupled surface waves that are also predicted in linear perturbation theory. The characteristic theory of fluid dynamics is used to help interpret the wave morphologies. It is demonstrated that these waves can be excited by imposing an arbitrary disturbance. From the numerical simulations, it is found that the sound waves propagating against the flow slow down as they propagate outward, and they grow in amplitude. These waves eventually disrupt the jet at a certain length. This disruption length is related to the jet Mach number and the perturbation intensity. Thus, the Mach number of a jet observed with a radio telescope can be estimated by measuring the disruption length and estimating the perturbation intensity. The jet Mach numbers in radio tailed sources determined in this way agree quite well with estimates from ram pressure bending arguments. The wiggles and flares observed in many extragalactic jets, especially in tailed radio sources, appear to be intimately related to instabilities and the jet disruption process.

Zhao, Jun-Hui↗

NASA NTRS2010

Optical Structural Health Monitoring Device

This non-destructive, optical fatigue detection and monitoring system relies on a small and unobtrusive light-scattering sensor that is installed on a component at the beginning of its life in order to periodically scan the component in situ. The method involves using a laser beam to scan the surface of the monitored component. The device scans a laser spot over a metal surface to which it is attached. As the laser beam scans the surface, disruptions in the surface cause increases in scattered light intensity. As the disruptions in the surface grow, they will cause the light to scatter more. Over time, the scattering intensities over the scanned line can be compared to detect changes in the metal surface to find cracks, crack precursors, or corrosion. This periodic monitoring of the surface can be used to indicate the degree of fatigue damage on a component and allow one to predict the remaining life and/or incipient mechanical failure of the monitored component. This wireless, compact device can operate for long periods under its own battery power and could one day use harvested power. The prototype device uses the popular open-source TinyOS operating system on an off-the-shelf Mica2 sensor mote, which allows wireless command and control through dynamically reconfigurable multi-node sensor networks. The small size and long life of this device could make it possible for the nodes to be installed and left in place over the course of years, and with wireless communication, data can be extracted from the nodes by operators without physical access to the devices. While a prototype has been demonstrated at the time of this reporting, further work is required in the system s development to take this technology into the field, especially to improve its power management and ruggedness. It should be possible to reduce the size and sensitivity as well. Establishment of better prognostic methods based on these data is also needed. The increase of surface roughness with fatigue is closely connected to the microstructure of the metal, and ongoing research is seeking to connect this observed evidence of the fatigue state with microstructural theories of fatigue evolution to allow more accurate prognosis of remaining component life. Plans are also being discussed for flight testing, perhaps on NASA s SOFIA platform.

Buckner, Benjamin D.↗

DOE OSTI2023

MHD modeling of shattered pellet injection in JET

Abstract Nonlinear 3D MHD simulations of shattered-pellet injection (SPI) in JET show prototypical SPI-driven disruptions using the M3D-C1 and NIMROD extended-MHD codes. Initially, radiation-driven thermal quenches are accelerated by MHD activity as the pellet crosses rational surfaces, leading to a radiation spike, global stochasticization of the magnetic field, and a complete thermal quench. Eventually, current quenches, preceded by a current spike are seen as the Ohmic heating becomes equal to the radiative cooling. The results are qualitatively similar for both a single monolithic pellet, pencil-beam model, and a realistic shatter to represent the SPI plume. A scan in viscosity from 500 to 2000 m 2 s −1 for MHD simulations finds that reducing viscosity increases MHD activity and decreases thermal quench time slightly. A realistic cloud of fragments modeling shows that mixed-D–Ne pellet travels deeper into the plasma core before the thermal quench. At the slow pellet speeds, the pellet is found to be moving slowly enough inward that even the 5% neon in the mixed pellet is enough to effectively radiate the thermal energy available. Radiation toroidal peaking is predicted to be at levels consistent with experimental observations and reduced as the pellet travels deeper into the plasma. These simulations lay the ground work for more-sophisticated validative and predictive modeling of SPI in JET using both M3D-C1 and NIMROD.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2025

Secure State Estimation with Asynchronous Measurements for Coordinated Cyber Attack Detection in Active Distribution Systems

Coordinated cyber attacks tamper with measurement data to disrupt the situational awareness of active distribution systems. Various sensors report measurements asynchronously at different rates, which introduces challenges during state estimation. In addition, this forces cyber intruders to exert greater effort to compromise multiple communication channels and launch coordinated attacks. Therefore, multi-channel and asynchronous measurements could be harnessed to develop more secure cyber defense strategies. In this paper, a prediction-correction-based multi-rate observer is designed to exploit the value of asynchronous measurements for the detection of coordinated false data injection (FDI) attacks. First, a time-function-dependent prediction-correction strategy is proposed to adjust the sampling interval for each sensor’s measurement. Then, an observer is designed based on the trade-off between estimation error and the optimal period of the most recent sampling instant, with the convergence of estimation error with the maximum permitted sampling interval. Moreover, the conditions for exponential stability are developed using the Lyapunov–Krasovskii functional technique. Next, a coordinated FDI attack detection strategy is developed based on the dual nonlinear minimization problem. The proposed attack detection and secure state estimation strategies are tested on the IEEE 13-node system. Simulation results show that these schemes are effective in enhancing attack detection based on asynchronous measurements or compromised data.

asynchronous measurements↗

NASA NTRS2003

Modeling the Extended Neutral Atmosphere and Plasma Environment near Saturn

In the three years of this study we have published five papers in refereed journals. We have first examined satellite sources and their contribution to the observed neutral cloud. Based on the total calculated satellite sources and the spatial distribution of sputtered H20, we concluded that they cannot produce observed OH cloud. The E-ring contribution has been also studied in detail.In order to produce observed OH cloud we suggested that the E-ring might be the dominant source in inner Saturnian magnetosphere. We proposed a possible resupply mechanism which is needed to keep both E-ring and OH cloud in the present state: collisions between E-ring grains and remains of a disrupted satellite near Enceladus Lagrangian points. In this scenario a large amount of material, ranging from a few micrometers to hundred of meters, which is optically invisible at present, is likely to exist there. The fourth paper compares the magnetosheaths of the outer planets. A surprising result is that the hot proton component comprises about 40% of the total density, much larger than predicted by shock theory. Gas dynamic models of the boundaries show that the magnetospheres of Jupiter and Saturn are flattened at the poles. The last paper was published in GRL and is the first based of the model of neutrals developed as a main goal of this grant and which is now operational.This Monte Carlo collision code self- consistently determines the neutral distribution. from the rings and satellites until they are lost by ionization, by collisions with rings, moons, or Saturn, or by escape from Saturn. Our model is unique in that it includes the effects of plasma chemistry and both plasma-neutral and neutral neutral collisions to determine the dynamical evolution of the water group neutrals in Saturn's magnetosphere. The lifetimes of the neutrals against loss to photoionization, charge exchange, electron dissociation and electron impact dissociation are based on the model given by (Richardson et al. 1998) and vary with position in the magnetosphere. The dominant neutral dissociation channels H20->OH+H, H20-> O+H2, and OH->O+H2 are considered.

Richardson, John D.↗

DOE OSTI2023

Decrease in multiple complement proteins associated with development of islet autoimmunity and type 1 diabetes

Type 1 diabetes (T1D) is a chronic condition caused by autoimmune destruction of the insulin-producing pancreatic ß-cells. While it is known that gene-environment interactions play a key role in triggering the autoimmune process leading to T1D, the pathogenic mechanism leading to the appearance of islet autoantibodies - biomarkers of autoimmunity – is poorly understood. Here we show that disruption of the complement system precedes the detection of islet autoantibodies and persists through diagnosis. Our results suggest that children who exhibit islet autoimmunity and progress to clinical T1D are complement deficient relative to those who do not progress within a similar timeframe. Thus, the complement pathway, an understudied mechanistic and therapeutic target in T1D, merits increased attention for use as protein biomarkers of prediction and potentially prevention of T1D.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

Molecular Mechanisms of Sorbed Ion Effects during Boehmite Particle Aggregation

Classical theories of particle aggregation, such as Derjaguin–Landau–Verwey–Overbeek (DLVO), do not explain recent observations of ion-specific effects or the complex concentration dependence for aggregation. Thus, here, we probe the molecular mechanisms by which selected alkali nitrate ions (Na + , K + , and NO 3 –) influence aggregation of the mineral boehmite (γ-AlOOH) nanoparticles. Nanoparticle aggregation was analyzed using classical molecular dynamics (CMD) simulations coupled with the metadynamics rare event approach for stoichiometric surface terminations of two boehmite crystal faces. Calculated free energy landscapes reveal how electrolyte ions alter aggregation on different crystal faces relative to pure water. Consistent with experimental observations, we find that adding an electrolyte significantly reduces the energy barrier for particle aggregation (~3–4×). However, in this work, we show this is due to the ions disrupting interstitial water networks, and that aggregation between stoichiometric (010) basal–basal surfaces is more favorable than between (001) edge–edge surfaces (~5–6×) due to the higher interfacial water densities on edge surfaces. The interfacial distances in the interlayer between aggregated particles with electrolytes (~5–10 Å) are larger than those in pure water (a few Ångströms). Together, aggregation/disaggregation in salt solutions is predicted to be more reversible due to these lower energy barriers, but there is uncertainty on the magnitudes of the energies that lead to aggregation at the molecular scale. By analyzing the peak water densities of the first monolayer of interstitial water as a proxy for solvent ordering, we find that the extent of solvent ordering likely determines the structures of aggregated states as well as the energy barriers to move between them. Further, the results suggest a path for developing a molecular-level basis to predict the synergies between ions and crystal faces that facilitate aggregation under given solution conditions. Such fundamental understanding could be applied extensively to the aggregation and precipitation utilization in the biological, pharmaceutical, materials design, environmental remediation, and geological regimes.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2025

Quenching of the octupole rotational band in 71 Ge

The main goal of this study was to enhance the knowledge of the properties of the known octupole rotational band in 71 Ge, including transition rates, and to investigate whether the band persists to higher spin. An experiment at Florida State University using the 62 Ni ( 14 C, 𝛼⁢𝑛) reaction at 50 MeV was used to produce 71 Ge at high spin. An array of ten Compton-suppressed Ge detectors, consisting of three Clover detectors and seven single-crystal detectors, was used to measure the 𝛾 decays in coincidence. An analysis of the resulting coincidence spectra resulted in the placement of 13 additional transitions in the 71 Ge level scheme, one of which (1092 keV) extends the octupole band to a (35/2 − ) state at 8206 keV. However, calculations of the kinematic moment of inertia show that the 1092-keV transition disrupts the rigid rotational pattern and is likely associated with a band crossing, potentially quenching the octupole deformation. Transition strengths inferred from lifetime measurements in the octupole band are not well reproduced by either shell-model calculations using the JUN45 interaction or a semimicroscopic cluster model, while those for the 𝜈⁢𝑔 9/2 band are in good agreement with the corresponding shell-model predictions. Comparisons between the octupole band in 71 Ge and negative-parity bands based on 3 − octupole states in some neighboring even-even nuclei show both similarities and differences. Systematic trends within the 𝜈⁢𝑔 9/2 bands among odd-𝐴 Ge isotopes point to increased collectivity near 𝑁 = 40.

59 ≤ A ≤ 89↗

DOE OSTI2024

A physics-constrained deep learning surrogate model of the runaway electron avalanche growth rate

A surrogate model of the runaway electron avalanche growth rate in a magnetic fusion plasma is developed. This is accomplished by employing a physics-informed neural network (PINN) to learn the parametric solution of the adjoint to the relativistic Fokker–Planck equation. The resulting PINN is able to evaluate the runaway probability function across a broad range of parameters in the absence of any synthetic or experimental data. This surrogate of the adjoint relativistic Fokker–Planck equation is then used to infer the avalanche growth rate as a function of the electric field, synchrotron radiation and effective charge. Predictions of the avalanche PINN are compared against first principle calculations of the avalanche growth rate with excellent agreement observed across a broad range of parameters.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2025

Woody Plant Transformation: Current Status, Challenges, and Future Perspectives

Woody plants, comprising forest and fruit tree species, provide essential ecological and economic benefits to society. Their genetic improvement is challenging due to long generation intervals and high heterozygosity. Genetic transformation, which combines targeted DNA delivery with plant regeneration from transformed cells, offers a powerful alternative to accelerating their domestication and improvement. Agrobacterium tumefaciens, Rhizobium rhizogenes, and particle bombardment have been widely used for DNA delivery into a wide variety of explants, including leaves, stems, hypocotyls, roots, and embryos, with regeneration occurring via direct organogenesis, callus-mediated organogenesis, somatic embryogenesis, or hairy root formation. Despite successes, conventional approaches are hampered by low efficiency, genotype dependency, and a reliance on challenging tissue culture. This review provides a critical analysis of the current landscape in woody plant transformation, moving beyond a simple summary of techniques to evaluate the co-evolution of established platforms with disruptive technologies. Key advances among these include the use of developmental regulators to engineer regeneration, the rise in in planta systems to bypass tissue culture, and the imperative for DNA-free genome editing to meet regulatory and public expectations. By examining species-specific breakthroughs in key genera, including Populus, Malus, Citrus, and Pinus, this review highlights a paradigm shift from empirical optimization towards rational, predictable engineering of woody plants for a sustainable future.

Agrobacterium tumefaciens↗