Hydrodynamic problems in blood coagulation
Hydrodynamic model of blood coagulation in stagnation point flow, analyzing platelet diffusion, white cell bonding stress and thrombus formation
Petschek, H. E.↗
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Some analytical results for radiative transfer in thick atmospheres
Singular eigenmode expansions are a convenient analytical tool with which to study problems of monochromatic radiative transfer in thick or semi-infinite atmospheres. Some closed-form solutions are presented for anisotropic scattering, with the neglect of polarization effects. A basic ingredient for applications to the semi-infinite medium is Chandrasekhar's H-function, which is best defined through the Wiener-Hopf factorization. The solutions of the Milne and albedo problems are discussed in order that the method of matched asymptotic approximations may be used to describe the solution for a thick atmosphere adjacent to a diffusely reflecting ground. Expressions for the emerging distributions are quoted. A possible extension of the general scheme to problems involving polarization is indicated.
Kuscer, I.↗
Diffusion in single-phase binary alloys
DBAS 1 computer program provides analyst with simple algorithms for exact rapid solutions of systems with planar, cylindrical, or spherical interfaces. Conventional solutions are complex and present convergence problems. Two algorithm types are figured for each geometry; one converges rapidly for short and the other for long diffusion times. DBAS 1 is written in FORTRAN IV for batch execution.
Tenney, D. R.↗
Load Diffusion in Composite and Smart Structures
The research carried out here builds on our previous NASA supported research on the general topic of edge effects and load diffusion in composite structures. Further fundamental solid mechanics studies were carried out to provide a basis for assessing the complicated modeling necessary for the multi-functional large scale structures used by NASA. An understanding of the fundamental mechanisms of load diffusion in composite subcomponents is essential in developing primary composite structures. Some specific problems recently considered were those of end effects in smart materials and structures, study of the stress response of pressurized linear piezoelectric cylinders for both static and steady rotating configurations, an analysis of the effect of pre-stressing and pre-polarization on the decay of end effects in piezoelectric solids and investigation of constitutive models for hardening rubber-like materials. Our goal in the study of load diffusion is the development of readily applicable results for the decay lengths in terms of non-dimensional material and geometric parameters. Analytical models of load diffusion behavior are extremely valuable in building an intuitive base for developing refined modeling strategies and assessing results from finite element analyses.
Horgan, Cornelius O.↗
Load Diffusion in Composite and Smart Structures
The research carried out here builds on our previous NASA supported research on the general topic of edge effects and load diffusion in composite structures. Further fundamental solid mechanics studies were carried out to provide a basis for assessing the complicated modeling necessary for the multi-functional large scale structures used by NASA. An understanding of the fundamental mechanisms of load diffusion in composite subcomponents is essential in developing primary composite structures. Some specific problems recently considered were those of end effects in smart materials and structures, study of the stress response of pressurized linear piezoelectric cylinders for both static and steady rotating configurations, an analysis of the effect of pre-stressing and pre-polarization on the decay of end effects in piezoelectric solids and investigation of constitutive models for hardening rubber-like materials. Our goal in the study of load diffusion is the development of readily applicable results for the decay lengths in terms of non-dimensional material and geometric parameters. Analytical models of load diffusion behavior are extremely valuable in building an intuitive base for developing refined modeling strategies and assessing results from finite element analyses. The decay behavior of stresses and other field quantities provides a significant aid towards this process. The analysis is also amenable to parameter study with a large parameter space and should be useful in structural tailoring studies. Special purpose analytical models of load diffusion behavior are extremely valuable in building an intuitive base for developing refined modeling strategies and in assessing results from general purpose finite element analyses. For example, a rational basis is needed in choosing where to use three-dimensional to two-dimensional transition finite elements in analyzing stiffened plates and shells. The decay behavior of stresses and other field quantities furnished by this research provides a significant aid towards this element transition issue. A priori knowledge of the extent of boundary-layers induced by edge effects is also useful in determination of the instrumentation location in structural verification tests or in material characterization tests.
Horgan, C. O.↗
A Scalable Reduced‐Order Model for the Steady Navier–Stokes Equations
Scaling up new scientific technologies from laboratory to industry often involves demonstrating performance on a larger scale. Computer simulations can accelerate design and predictions in the deployment process, though traditional numerical methods are computationally intractable even for intermediate pilot plant scales. Recently, the component reduced order modeling method has been developed to tackle this challenge by combining projection reduced order modeling and discontinuous Galerkin domain decomposition. However, while many scientific or engineering applications involve nonlinear physics, this method has only been demonstrated for various linear systems. In this work, the component reduced order modeling method is extended to steady Navier–Stokes flow, with application to general nonlinear physics in view. The large‐scale, global domain is decomposed into a combination of small‐scale unit component. Linear subspaces for flow velocity and pressure are identified via proper orthogonal decomposition over sample snapshots collected from each small‐scale unit component. Velocity bases are augmented with a pressure supremizer to satisfy the inf–sup condition for stable pressure prediction. Two different nonlinear reduced order modeling methods are employed and compared for efficient evaluation of nonlinear advection: A third‐order tensor projection operator and the empirical quadrature procedure. The proposed method is demonstrated on the flow over arrays of five different unit objects, achieving a 23‐fold speedup with less than 4% relative error in domains up to 256 times larger than the unit components. Furthermore, a numerical experiment with the pressure supremizer strongly indicates the need for a supremizer for stable pressure prediction. A comparison between the tensorial approach and the empirical quadrature procedure revealed a slight advantage of the empirical quadrature procedure. The framework is compared with an alternating Schwarz‐based reduced‐order approach, demonstrating improved efficiency and robustness for the DG‐based global solver while retaining flexibility for sub‐scale iterative solvers. The method is further extended to a coupled advection–diffusion and Navier–Stokes system, illustrating its applicability to multi‐physics problems and its potential for more general, inter‐coupled nonlinear systems.
42 ENGINEERING↗
Tackling the curse of dimensionality in fractional and tempered fractional PDEs with physics-informed neural networks
Fractional and tempered fractional partial differential equations (PDEs) are effective models of long-range interactions, anomalous diffusion, and non-local effects. Traditional numerical methods for these problems are mesh-based, thus struggling with the curse of dimensionality (CoD). Physics-informed neural networks (PINNs) offer a promising solution due to their universal approximation, generalization ability, and mesh-free training. In principle, Monte Carlo fractional PINN (MC-fPINN) estimates fractional derivatives using Monte Carlo methods and thus could lift CoD. However, this may cause significant variance and errors, hence affecting convergence; in addition, MC-fPINN is sensitive to hyperparameters. In general, numerical methods and specifically PINNs for tempered fractional PDEs are under-developed. Herein, we extend MC-fPINN to tempered fractional PDEs to address these issues, resulting in the Monte Carlo tempered fractional PINN (MC-tfPINN). To reduce possible high variance and errors from Monte Carlo sampling, we replace the one-dimensional (1D) Monte Carlo with 1D Gaussian quadrature, applicable to both MC-fPINN and MC-tfPINN. We validate our methods on various forward and inverse problems of fractional and tempered fractional PDEs, scaling up to 100,000 dimensions. Our improved MC-fPINN/MC-tfPINN using quadrature consistently outperforms the original versions in accuracy and convergence speed in very high dimensions.
42 ENGINEERING↗
Flow matching meets biology and life science: a survey
Over the past decade, advances in generative modeling, such as generative adversarial networks, masked autoencoders, and diffusion models, have significantly transformed biological research and discovery, enabling breakthroughs in molecule design, protein generation, catalysis discovery, drug discovery, and beyond. At the same time, biological applications have served as valuable testbeds for evaluating the capabilities of generative models. Recently, flow matching has emerged as a powerful and efficient alternative to diffusion-based generative modeling, with growing interest in its application to problems in biology and life sciences. This paper presents the first comprehensive survey of recent developments in flow matching and its applications in biological domains. We begin by systematically reviewing the foundations and variants of flow matching, and then categorize its applications into three major areas: biological sequence modeling, molecule generation and design, and peptide and protein generation. For each, we provide an in-depth review of recent progress. We also summarize commonly used datasets and software tools, and conclude with a discussion of potential future directions.
59 BASIC BIOLOGICAL SCIENCES↗
Latent diffusion can map beam loss to two-dimensional phase-space projections
Beam loss monitors (BLMs) and beam current monitors (BCMs) are ubiquitous at particle accelerators around the world. These simple devices provide noninvasive high-level beam measurements but give no insight into the detailed 6D (𝑥,𝑦,𝑧,𝑝 𝑥 ,𝑝 𝑦 ,𝑝 𝑧 ) beam phase-space distributions or dynamics. We show that generative conditional latent diffusion models can learn intricate patterns to solve the extreme inverse problem of mapping waveforms of tens of BLMs or BCMs along an accelerator to detailed 2D projections of a charged particle beam’s 6D phase-space density. This transformational method can be used at any particle accelerator to transform simple noninvasive devices into detailed beam phase-space diagnostics. We demonstrate this concept via multiparticle simulations of the high-intensity beam in the kilometer-long Los Alamos Neutron Science Center linear proton accelerator.
43 PARTICLE ACCELERATORS↗
A geometric perspective on kinetic matter–radiation interaction and moment systems
Here, in this paper, we provide a geometric perspective on the kinetic interaction of matter and radiation, based on a pair bracket approach. We discuss the interaction of kinetic theories via dissipative brackets, with our fundamental example being the coupling of matter, described by the Boltzmann equation, and radiation, described by the radiation transport equation. We explore the transition from kinetic systems to their corresponding moment systems, provide a Hamiltonian description of such moment systems, and give a geometric interpretation of the moment closure problem for kinetic theories. As an application, we discuss in detail diffusion radiation hydrodynamics as an example of a pair bracket formulation on a space of moments corresponding to kinetic matter–radiation interaction. Additionally, using the variable moment closure framework of Burby [J. W. Burby, Variable-moment fluid closures with Hamiltonian structure, Sci. Rep. 13 (2023) 18286, doi:10.1038/s41598-023-45416-5], we show how to construct Hamiltonian moment closures for kinetic transport equations with arbitrary Hamiltonian. Using this general construction, we derive novel Hamiltonian moment closures for pure radiation transport.
97 MATHEMATICS AND COMPUTING↗
The Galactic Annihilation Line Explorer (GALE): Balloon-borne Mission to study Galactic 511-keV annihilation emission
The Galactic Annihilation Line Explorer (GALE) mission will address the long-standing question of the sources of Galactic positrons: whether they are produced by unresolved astrophysical sources or created via diffuse processes, possibly due to dark matter decay and/or annihilation. The problem of Galactic positrons that produce 511-keV gamma-ray emission from the Galactic plane and Galactic Center has existed for years and is well-defined by the measurements of INTEGRAL/SPI. GALE is designed to achieve the needed angular resolution (fraction of a degree) and point source sensitivity (< 10−4 ph/cm2/s) required to understand the 511-keV emission structure in the Galactic Center. The GALE instrument combines a coded-aperture mask (CAM) with a cadmium-zinc-telluride imaging calorimeter (ImCal) to form a combined CAM/Compton telescope. This is mated with the Wallops Arc-Second Pointer (WASP) support system to achieve the precise telescope pointing control required for imaging the Galactic Center. In this paper, the science goals, GALE instrument concept, anticipated performance and mission results will be discussed.
Moiseev, Alex A [University of Maryland, College P↗
Time coded distribution via broadcasting stations
The distribution of standard time signals via AM and FM broadcasting stations presents the distinct advantages to offer a wide area coverage and to allow the use of inexpensive receivers, but the signals are radiated a limited number of times per day, are not usually available during the night, and no full and automatic synchronization of a remote clock is possible. As an attempt to overcome some of these problems, a time coded signal with a complete date information is diffused by the IEN via the national broadcasting networks in Italy. These signals are radiated by some 120 AM and about 3000 FM and TV transmitters around the country. In such a way, a time ordered system with an accuracy of a couple of milliseconds is easily achieved.
Leschiutta, S.↗
Atmospheric and Science Complexity Effects on Surface Bidirectional Reflectance
Among the tools used in passive remote sensing of Earth resources in the visible and near-infrared spectral regions are measurements of spectral signature and bidirectional reflectance functions (BDRFs). Determination of surface properties using these observables is complicated by a number of factors, including: (1) mixing of surface components, such as soil and vegetation, (2) multiple reflections of radiation due to complex geometry, such as in crop canopies, and (3) atmospheric effects. In order to bridge the diversity in these different approaches, there is a need for a fundamental physical understanding of the influence of the various effects and a quantiative measure of their relative importance. In particular, we consider scene complexity effects using the example of reflection by vegetative surfaces. The interaction of sunlight with a crop canopy and interpretation of the spectral and angular dependence of the emergent radiation is basically a multidimensional radiative transfer problem. The complex canopy geometry, underlying soil cover, and presence of diffuse as well as collimated illumination will modify the reflectance characteristics of the canopy relative to those of the individual elements.
Diner, D. J.↗
Space plasma turbulent dissipation - Reality or myth?
A prevalent approach to understanding magnetospheric dynamics is to combine a hydromagnetic description of the large scale magnetic structure and convection flows with a locally determined anomalous dissipation which develops in boundary layers. Three problems (nose and tail reconnection, auroral field-aligned currents, and diffuse auroral precipitation) are critically examined to test the validity of this theoretical philosophy. Although the expected plasma wave turbulence is observed for each case, the concept of local anomalous dissipation fails to provide an adequate or complete description of the phenomenae.
Coroniti, F. V.↗
Radiation transport in dust in disk geometry
The main objective of the research program is twofold: (1) to develop a computer code to solve the problem of scattering, absorption and emission of photons by dust grains in a dusty medium with 2 dimensional disk geometry, and (2) to study the various physical and geometrical effects of 2 dimensional radiation transport on the thermal structure and radiation field. These tasks were accomplished and are briefly summarized. The method for solving the radiation transport problem in disk geometry is a generalization of the quasi-diffusion method (QDM) previously developed by the author.
Chun, Ming Leung↗
Diffuse reflection from a stochastically bounded, semi-infinite medium
In order to determine the diffuse reflection from a medium bounded by a rough surface, the problem of radiative transfer in a boundary layer characterized by a statistical distribution of heights is considered. For the case that the surface is defined by a multivariate normal probability density, the propagation probability for rays traversing the boundary layer is derived and, from that probability, a corresponding radiative transfer equation. A solution of the Eddington (two stream) type is found explicitly, and examples are given. The results should be applicable to reflection from the regoliths of solar system bodies, as well as from a rough ocean surface.
Lumme, K.↗
The application of preconditioning in viscous flows
The present time-derivative preconditioning algorithm is effective in flow conditions ranging from inviscid to very diffusive flows, as well as low subsonic to supersonic flow velocities. By means of a preconditioning matrix that (1) introduces well-conditioned eigenvalues and (2) avoids nonphysical time reversals for viscous flows, a mechanism is obtained which controls the inviscid and viscous time-step parameters at very diffusive flows. These capabilities are demonstrated for a variety of sample problems; convergence rates of solutions that are indistinguishable from those obtained without preconditioning are shown to be accelerated by as much as two orders of magnitude.
Choi, Y.-H.↗
A class of the van Leer-type transport schemes and its application to the moisture transport in a general circulation model
A generalized form of the second-order van Leer transport scheme is derived. Several constraints to the implied subgrid linear distribution are discussed. A very simple positive-definite scheme can be derived directly from the generalized form. A monotonic version of the scheme is applied to the Goddard Laboratory for Atmospheres (GLA) general circulation model (GCM) for the moisture transport calculations, replacing the original fourth-order center-differencing scheme. Comparisons with the original scheme are made in idealized tests as well as in a summer climate simulation using the full GLA GCM. A distinct advantage of the monotonic transport scheme is its ability to transport sharp gradients without producing spurious oscillations and unphysical negative mixing ratio. Within the context of low-resolution climate simulations, the aforementioned characteristics are demonstrated to be very beneficial in regions where cumulus convection is active. The model-produced precipitation pattern using the new transport scheme is more coherently organized both in time and in space, and correlates better with observations. The side effect of the filling algorithm used in conjunction with the original scheme is also discussed, in the context of idealized tests. The major weakness of the proposed transport scheme with a local monotonic constraint is its substantial implicit diffusion at low resolution. Alternative constraints are discussed to counter this problem.
Lin, Shian-Jiann↗