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NASA NTRS1997

Mathematical and Computational Challenges in Population Biology and Ecosystems Science

Mathematical and computational approaches provide powerful tools in the study of problems in population biology and ecosystems science. The subject has a rich history intertwined with the development of statistics and dynamical systems theory, but recent analytical advances, coupled with the enhanced potential of high-speed computation, have opened up new vistas and presented new challenges. Key challenges involve ways to deal with the collective dynamics of heterogeneous ensembles of individuals, and to scale from small spatial regions to large ones. The central issues-understanding how detail at one scale makes its signature felt at other scales, and how to relate phenomena across scales-cut across scientific disciplines and go to the heart of algorithmic development of approaches to high-speed computation. Examples are given from ecology, genetics, epidemiology, and immunology.

Levin, Simon A.↗

NASA NTRS1999

Mapping Northern Ecosystems with POLDER: Applications for Circumpolar Methane Exchange

This Joint Research Interchange was originally Proposed concurrent with the launch in the fall of 1996 of a revolutionary new satellite sensor which offered great promise to significantly advance atmospheric, oceanographic and land surface studies, i.e., ADEOS POLDER (Advanced Earth Observation Satellite / POLarization and Directionality of the Earth's Reflectance). Unfortunately, the ADEOS mission ended on June 30, 1997 due to a loss of power. As a consequence, this NASA-UVM collaboration was redirected to focus on analyses of airborne-POLDER data acquired in support of the joint U.S.-Canada Boreal Ecosystem Atmosphere Study (BOREAS) in the summer of 1994. We present here a brief summary of results of that effort; details are provided in the manuscripts referenced below.

Livingston, Gerald↗

NASA NTRS2000

One-Dimensional Coupled Ecosystem-Carbon Flux Model for the Simulation of Biogeochemical Parameters at Ocean Weather Station P

In this Technical Publication, we describe the model functionality and analyze its application to the seasonal and interannual variations of phytoplankton, nutrients, pCO2 and CO2 concentrations in the eastern subarctic Pacific at Ocean Weather Station P (OWSP, 50 deg. N 145 deg. W). We use a verified one-dimensional ecosystem model, coupled with newly incorporated carbon flux and carbon chemistry components, to simulate 22 years (1958-1980) of pCO2 and CO2 variability at Ocean Weather Station P (OWS P). This relatively long period of simulation verifies and extends the findings of previous studies using an explicit approach for the biological component and realistic coupling with the carbon flux dynamics. The slow currents and the horizontally homogeneous ocean in the subarctic Pacific make OWS P one of the best available candidates for modeling the chemistry of the upper ocean in one dimension. The chlorophyll and ocean currents composite for 1998 illustrates this premise. The chlorophyll concentration map was derived from SeaWiFS data and the currents are from an OGCM simulation (from R. Murtugudde).

Signorini, S.↗

NASA NTRS2000

Mitigating Adverse Effects of a Human Mission On Possible Martian Indigenous Ecosystems

Although human beings are, by most standards, the most capable agents to search for and detect extraterrestrial life, we are also potentially the most harmful. While there has been substantial work regarding forward contamination with respect to robotic missions, the issue of potential adverse effects on possible indigenous Martian ecosystems, such as biological contamination, due to a human mission has remained relatively unexplored and may require our attention now as this presentation will try to demonstrate by exploring some of the relevant scientific questions, mission planning challenges, and policy issues. An informal, high-level mission planning decision tree will be discussed and is included as the next page of this abstract. Some of the questions to be considered are: To what extent could contamination due to a human presence compromise possible indigenous life forms? To what extent can we control contamination? For example, will it be local or global? What are the criteria for assessing the biological status of Mars, both regionally and globally? For example, can we adequately extrapolate from a few strategic missions such as sample return missions? What should our policies be regarding our mission planning and possible interaction with what are likely to be microbial forms of extraterrestrial life? Central to the science and mission planning issues is the role and applicability of terrestrial analogs, such as Lake Vostok for assessing drilling issues, and modeling techniques. Central to many of the policy aspects are scientific value, international law, public concern, and ethics. Exploring this overall issue responsibly requires an examination of all these aspects and how they interrelate.

Lupisella, Mark L.↗

NASA NTRS2000

Technical Report Series on the Boreal Ecosystem-Atmosphere Study (BOREAS) RSS-19 1994 CASI At-Sensor Radiance and Reflectance Images

The Remote Sensing Science (RSS)-19 team collected Compact Airborne Spectrographic Imager (CASI) images from the Chieftain Navaho aircraft in order to observe the seasonal change in the radiometric reflectance properties of the boreal forest landscape. CASI was deployed as a site-specific optical sensor during Boreal Ecosystem-Atmosphere Study (BOREAS) field campaigns. Image data were collected with CASI on 36 days during five field campaigns between February and September 1994, primarily at flux tower sites located at study sites near Thompson, Manitoba, and Prince Albert, Saskatchewan. A variety of CASI data collection strategies were used to meet the following scientific objectives: 1) canopy bidirectional reflectance, 2) canopy biochemistry, 3) spatial variability, and 4) estimates of up and downwelling Photosynthetically Active Radiation (PAR) and spectral albedo, as well as changes along transects across lakes and transects the Northern Study Area (NSA) and Southern Study Area (SSA). The images are stored as binary image files. A subset of the 1994 CASI acquisitions have been compressed and included on the BOREAS CD-ROM set. This subset includes three images for the NSA-OBS (Old Black Spruce) site on 06 Jun 94, 08 Aug 94, and 06 Sep 94, one image for the SSA-OBS site on 24 Jul 94; and one image for the NSA-Fen site on 08 Aug 94. The CASI imagery on the BOREAS CD-ROMs have been compressed using the Gzip program. The rest of the 1994 BOREAS CASI archive are not contained on the BOREAS CD-ROM set. Inventory listing files are supplied on the CD-ROM to inform users of the data that were collected. The RSS-19 1994 CASI images are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). The data files are available on a CD-ROM (see document number 20010000884).

Miller, John↗

NASA NTRS2000

Hydrogen Biogeochemistry in Anaerobic and Photosynthetic Ecosystems

The simple biochemistry of molecular hydrogen is central to a large number of microbial processes, affecting the interaction of organisms with each other and with the environment. In anoxic sediments, a great majority of microbial redox processes involve hydrogen as a reactant, product or potential by-product. Accordingly, the energetics (thermodynamics) of each of these processes is affected by variations in local H2 concentrations. It has long been established that this effect is important in governing microbe-microbe interactions and there are multiple demonstrations that "interspecies hydrogen transfer" can alter the products of, inhibit/stimulate, or even reverse microbial metabolic reactions. In anoxic sediments, H2 concentrations themselves are thought to be controlled by the thermodynamics of the predominant H2-consuming microbial process. In sediments from Cape Lookout Bight, this relationship quantitatively describes the co-variation of H2 concentrations with temperature (for methanogens and sulfate reducers) and with sulfate concentration (for sulfate reducers). The quantitative aspect is import= for two reasons: 1) it permits the modeling of H2-sensitive biogeochemistry, such as anaerobic methane oxidation or pathways of organic matter remineralization, as a function of environmental controls; 2) for such a relationship to be observed requires that intracellular biochemistry and bioenergetics are being directly expressed in a component of the extracellular medium. H2 could therefore be utilized a non-invasive probe of cellular energetic function in intact microbial ecosystems. Based on the latter principle we have measured down-core profiles of H2 and other relevant physico-chemical parameters in order to calculate the metabolic energy yields (DG) that support microbial metabolism in Cape Lookout Bight sediments. Methanogens in this system apparently function with energy yields significantly smaller than the minimum requirements suggested by pure culture studies. Our recent work has extended the study of hydrogen to cyanobacterial mat communities. The large amounts of reducing power generated during photosynthetic activity carry the potential to contribute a swamping term to the H2 economy of the anaerobic microbial populations within the mat - and thereby to alter the population structure and biogeochemical function of the mat as a whole. In hypersaline microbial mats, we observe a distinct diel cycle in H2 production and a substantial corresponding flux. On an early Earth dominated by microbial mats, this transmission of photosynthetic reducing power may have carried important implications for both biospheric and atmospheric evolution.

Hoehler, Tori M.↗

NASA NTRS1994

Subsurface Intertidal Microbes: A Cryptic Source Of Organic Carbon For Beach Ecosystems

Some freshwater, marine or hotspring beaches have no visible source of primary production, yet beneath the surface is an interstitial photosynthetic microbial community. To assess the significance of this source of organic carbon, we measured in situ carbon fixation rates in an intertidal marine beach through a diurnal cycle. Gross fixation for a transect (99 x 1 m) perpendicular to the shore was approx. 4041 mg C fixed/ day, or approx. 41 mg C fixed/ sq m day. In contrast, an adjacent well-established cyanobacterial (Lyngbya) mat was approx. 12 x as productive (approx. 490 mg C fixed/sq m day). Thus, subsurface sand mats may be an overlooked, yet important, endogenous source of organic carbon for intertidal ecosystems, as well as a sink in the global carbon cycle.

Rothschild, Lynn J.↗

NASA NTRS2001

Biogeochemical Processes in Microbial Ecosystems

The hierarchical organization of microbial ecosystems determines process rates that shape Earth's environment, create the biomarker sedimentary and atmospheric signatures of life, and define the stage upon which major evolutionary events occurred. In order to understand how microorganisms have shaped the global environment of Earth and, potentially, other worlds, we must develop an experimental paradigm that links biogeochemical processes with ever-changing temporal and spatial distributions of microbial populations and their metabolic properties. Additional information is contained in the original extended abstract.

DesMarais, David J.↗

NASA NTRS2001

AVIRIS Land-Surface Mapping in Support of the Boreal Ecosystem-Atmosphere Study (BOREAS)

A key scientific objective of the original Boreal Ecosystem-Atmospheric Study (BOREAS) field campaign (1993-1996) was to obtain the baseline data required for modeling and predicting fluxes of energy, mass, and trace gases in the boreal forest biome. These data sets are necessary to determine the sensitivity of the boreal forest biome to potential climatic changes and potential biophysical feedbacks on climate. A considerable volume of remotely-sensed and supporting field data were acquired by numerous researchers to meet this objective. By design, remote sensing and modeling were considered critical components for scaling efforts, extending point measurements from flux towers and field sites over larger spatial and longer temporal scales. A major focus of the BOREAS follow-on program is concerned with integrating the diverse remotely sensed and ground-based data sets to address specific questions such as carbon dynamics at local to regional scales. The Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) has the potential of contributing to BOREAS through: (1) accurate retrieved apparent surface reflectance; (2) improved landcover classification; and (3) direct assessment of biochemical/biophysical information such as canopy liquid water and chlorophyll concentration through pigment fits. In this paper, we present initial products for major flux tower sites including: (1) surface reflectance of dominant cover types; (2) a land-cover classification developed using spectral mixture analysis (SMA) and Multiple Endmember Spectral Mixture Analysis (MESMA); and (3) liquid water maps. Our goal is to compare these land-cover maps to existing maps and to incorporate AVIRIS image products into models of photosynthetic flux.

Roberts, Dar A.↗

NASA NTRS2001

Airborne spectral Measurements of Surface-Atmosphere Anisotropy for Several Surfaces and Ecosystem over Southern Africa

The Cloud Absorption Radiometer (CAR) was flown aboard the University of Washington Convair CV-580 research aircraft and took measurements on 23 flights between August 15 and September 16. On 12 of those flights, BRF measurements were obtained over different natural surfaces and ecosystem in southern Africa. The BRF measurements were done to characterize surface anisotropy in support of SAFARI 2000 science objectives principally to validate products from NASA's EOS satellites, and to parameterize and validate BRF models. In this paper we present results of BRFs taken over two EOS validation sites: Skukuza tower, South Africa (25.0 deg S, 31.5 deg E) and Mongu tower, Zambia (15.4 deg S, 23.3 deg E). Additional sites are also considered and include, Maun tower, Botswana (20.0 deg S, 23.5 deg E), Sowa Pan, Botswana (20.6 deg S, 26.2 deg E) and Etosha Pan, Namibia (19.0 deg S, 16.0 deg E). The CAR is capable of measuring scattered light in fourteen spectral bands. The scan mirror, rotating at 100 rpm, directs the light into a Dall-Kirkham telescope where the beam is split into nine paths. Eight light beams pass through beam splitters, dichroics, and lenses to individual detectors (0.34-1.27 micrometers), and finally are registered by eight data channels. They are sampled simultaneously and continuously. The ninth beam passes through a spinning filter wheel to an InSb detector cooled by a Stirling cycle cooler. Signals registered by the ninth data channel are selected from among six spectral channels (1.55-2.30 micrometers). The filter wheel can either cycle through all six spectral bands at a prescribed interval (usually changing filter every fifth scan line), or lock onto any one of the six spectral bands and sample it continuously. To measure the BRF of the surface-atmosphere system, the University of Washington CV-580 had to bank at a comfortable roll angle of approximately 20 degrees and fly in a circle about 3 km in diameter above the surface for roughly two minutes. Replicated observations (multiple circular orbits) were acquired over selected surfaces so that average BRF smooth out small-scale surface and atmospheric inhomogeneities. At an altitude of 600 m above the targeted surface area and with a 1 deg IFOV, the pixel resolution is about 10 m at nadir and about 270 m at an 80 deg viewing angle from the CAR.

Gatebe, Charles K.↗

NASA NTRS1997

Will Global Change Effect Primary Productivity in Coastal Ecosystems?

Algae are the base of coastal food webs because they provide the source of organic carbon for the remaining members of the community. Thus, the rate that they produce organic carbon to a large extent controls the productivity of the entire ecosystem. Factors that control algal productivity range from the physical (e.g., temperature, light), chemical (e.g., nutrient levels) to the biological (e.g., grazing). Currently, levels of atmospheric carbon dioxide surficial fluxes of ultraviolet radiation are rising. Both of these environmental variables can have a profound effect on algal productivity. Atmospheric carbon dioxide may increase surficial levels of dissolved inorganic carbon. Our laboratory and field studies of algal mats and phytoplankton cultures under ambient and elevated levels of pCO2 show that elevated levels of inorganic carbon can cause an increase in photosynthetic rates. In some cases, this increase will cause an increase in phytoplankton numbers. There may be an increase in the excretion of fixed carbon, which in turn may enhance bacterial productivity. Alternatively, in analogy with studies on the effect of elevated pCO2 on plants, the phytoplankton could change their carbon to nitrogen ratios, which will effect the feeding of the planktonic grazers. The seasonal depletion of stratospheric ozone has resulted in elevated fluxes of UVB radiation superimposed on the normal seasonal variation. Present surface UV fluxes have a significant impact on phytoplankton physiology, including the inhibition of the light and dark reactions of photosynthesis, inhibition of nitrogenase activity, inhibition of heterocyst formation, reduction in motility, increased synthesis of the UV-screening pigment scytonemin, and mutation. After reviewing these issues, recent work in our lab on measuring the effect of UV radiation on phytoplankton in the San Francisco Bay Estuary will be presented.

Rothschild, Lynn J.↗

NASA NTRS1997

Monitoring Earth's Ecosystems

Partnered with Goddard Space Flight Center, Sensit Technologies Inc. developed a third-generation Portable Apparatus for Rapid Acquisitions of Bidirectional Observations of Land and Atmosphere, or PARABOLA III for short. Now commercially available, PARABOLA III is designed to measure the reflected signature of a variety of Earth surface types, from rangeland vegetation to ice and snow. It can rapidly acquire data for almost the complete sky and ground-looking hemispheres, with no missing data and sufficient dynamic range to measure direct solar radiance. The instrument was actively used in the Boreal Ecosystem- Atmosphere Study which provided useful information in designing a Multi-angle Imaging SpectroRadiometer, a small satellite being built by the Jet Propulsion Laboratory that will measure sunlight reflected by the Earth into space.

Source record↗

NASA NTRS1985

Self Contained Ecosystems

A self contained ecosystem developed at Jet Propulsion Laboratory is manufactured by Engineering and Research Associates. It is essentially a no-care aquarium which requires only natural or fluorescent light.

Source record↗

NASA NTRS1999

Insects at low pressure: applications to artificial ecosystems and implications for global windborne distribution

Insects have a number of potential roles in closed-loop life support systems. In this study we examined the tolerance of a range of insect orders and life stages to drops in atmospheric pressure using a terrestrial atmosphere. We found that all insects studied could tolerate pressures down to 100 mb. No effects on insect respiration were noted down to 500 mb. Pressure toleration was not dependent on body volume. Our studies demonstrate that insects are compatible with plants in low-pressure artificial and closed-loop ecosystems. The results also have implications for arthropod colonization and global distribution on Earth.

Atmospheric Pressure↗

NASA NTRS1996

Considerations in miniaturizing simplified agro-ecosystems for advanced life support

Miniaturizing the Earth's biogeochemical cycles to support human life during future space missions is the goal of the NASA research and engineering program in advanced life support. Mission requirements to reduce mass, volume, and power have focused efforts on (1) a maximally simplified agro-ecosystem of humans, food crops, and microbes; and, (2) a design for optimized productivity of food crops with high light levels over long days, with hydroponics, with elevated carbon dioxide and other controlled environmental factors, as well as with genetic selection for desirable crop properties. Mathematical modeling contributes to the goals by establishing trade-offs, by analyzing the growth and development of experimental crops, and by pointing to the possibilities of directed phasic control using modified field crop models to increase the harvest index.

Non-NASA Center↗

NASA NTRS2006

Landsat Ecosystem Disturbance Adaptive Processing System (LEDAPS)

The Landsat Ecosystem Disturbance Adaptive Processing System (LEDAPS) project is creating a record of forest disturbance and regrowth for North America from the Landsat satellite record, in support of the carbon modeling activities. LEDAPS relies on the decadal Landsat GeoCover data set supplemented by dense image time series for selected locations. Imagery is first atmospherically corrected to surface reflectance, and then change detection algorithms are used to extract disturbance area, type, and frequency. Reuse of the MODIS Land processing system (MODAPS) architecture allows rapid throughput of over 2200 MSS, TM, and ETM+ scenes. Initial ("Beta") surface reflectance products are currently available for testing, and initial continental disturbance products will be available by the middle of 2006.

Masek, Jeffrey G.↗

NASA NTRS2007

Use of AIRS, OMI, MLS, and TES Data in Assessing Forest Ecosystem Exposure to Ozone

Ground-level ozone at high levels poses health threats to exposed flora and fauna, including negative impacts to human health. While concern is common regarding depletion of ozone in the stratosphere, portions of the urban and rural United States periodically have high ambient levels of tropospheric ozone on the ground. Ozone pollution can cause a variety of impacts to susceptible vegetation (e.g., Ponderosa and Jeffrey pine species in the southwestern United States), such as stunted growth, alteration of growth form, needle or leaf chlorosis, and impaired ability to withstand drought-induced water stress. In addition, Southern Californian forests with high ozone exposures have been recently subject to multiyear droughts that have led to extensive forest overstory mortality from insect outbreaks and increased incidence of wildfires. Residual forests in these impacted areas may be more vulnerable to high ozone exposures and to other forest threats than ever before. NASA sensors collect a wealth of atmospheric data that have been used recently for mapping and monitoring regional tropospheric ozone levels. AIRS (Atmospheric Infrared Sounder), OMI (Ozone Monitoring Instrument), MLS (Microwave Limb Sounder), and TES (Tropospheric Emission Spectrometer) data could be used to assess forest ecosystem exposure to ozone. Such NASA data hold promise for providing better or at least complementary synoptic information on ground-level ozone levels that Federal agency partners can use to assess forest health trends and to mitigate the threats as needed in compliance with Federal laws and mandates. NASA data products on ozone concentrations may be able to aid applications of DSTs (decision support tools) adopted by the USDA FS (U.S. Department of Agriculture Forest Service) and by the NPS (National Park Service), such as the Ozone Calculator, in which ground ozone estimates are employed to assess ozone impacts to forested vegetation.

Spruce, Joseph P.↗

NASA NTRS2007

Partitioning Evapotranspiration in Semiarid Grassland and Shrubland Ecosystems Using Diurnal Surface Temperature Variation

The encroachment of woody plants in grasslands across the Western U.S. will affect soil water availability by altering the contributions of evaporation (E) and transpiration (T) to total evapotranspiration (ET). To study this phenomenon, a network of flux stations is in place to measure ET in grass- and shrub-dominated ecosystems throughout the Western U.S. A method is described and tested here to partition the daily measurements of ET into E and T based on diurnal surface temperature variations of the soil and standard energy balance theory. The difference between the mid-afternoon and pre-dawn soil surface temperature, termed Apparent Thermal Inertia (I(sub A)), was used to identify days when E was negligible, and thus, ET=T. For other days, a three-step procedure based on energy balance equations was used to estimate Qe contributions of daily E and T to total daily ET. The method was tested at Walnut Gulch Experimental Watershed in southeast Arizona based on Bowen ratio estimates of ET and continuous measurements of surface temperature with an infrared thermometer (IRT) from 2004- 2005, and a second dataset of Bowen ratio, IRT and stem-flow gage measurements in 2003. Results showed that reasonable estimates of daily T were obtained for a multi-year period with ease of operation and minimal cost. With known season-long daily T, E and ET, it is possible to determine the soil water availability associated with grass- and shrub-dominated sites and better understand the hydrologic impact of regional woody plant encroachment.

Moran, M. Susan↗